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Report for Sequence Feature Glyma15g06366

Feature Type:gene_model
Chromosome:Gm15
Start:4505510
stop:4508164
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G38040AT Annotation by Michelle Graham. TAIR10: Exostosin family protein | chr4:17867501-17869131 FORWARD LENGTH=425 SoyBaseE_val: 2.00E-48ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005768GO-cc Annotation by Michelle Graham. GO Cellular Compartment: endosome SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0005802GO-cc Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
PTHR11062Panther EXOSTOSIN (HEPARAN SULFATE GLYCOSYLTRANSFERASE)-RELATED JGI ISS
PTHR11062:SF31Panther JGI ISS
PF03016PFAM Exostosin family JGI ISS
UniRef100_B9SA61UniRef Annotation by Michelle Graham. Most informative UniRef hit: Catalytic, putative n=1 Tax=Ricinus communis RepID=B9SA61_RICCO SoyBaseE_val: 7.00E-50ISS
UniRef100_UPI000233B5FCUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233B5FC related cluster n=1 Tax=unknown RepID=UPI000233B5FC SoyBaseE_val: 8.00E-90ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g06366 not represented in the dataset

Glyma15g06366 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma13g32950 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma15g06366.1   sequence type=CDS   gene model=Glyma15g06366   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATATGCAGGGGTTGACTATCGAGCGTATGATTGATGAAGTAGAGAAGTATGTGGAGCACCTAAAGTTGAAGTACCCTTATTGGAACAGAACCTTGGGTGCTGATCACTTTTTTGTTACTTGTCACGATATCGGTGTCAAGGCTACTAAAGGAGTTCCACATCTGACGAAAAATTCAATTCGAGTGGCTTGTTCATCAAGTTATGACGACGATGATTATGTTCCACATAAGGATGTTACCCTCCCACAAGTTCAACTGCCATTTTTTCACCCTCCAGGAGAAAATGACATCAAGAATAGGAACACATTTGCTTTCTGGGCTGGTCGTTCTGATTCAAGATTGAAAGATGATCTAATGGCTATGTGGGACAATGATACTGAACTTGACATACAGAACAAGAGTTGA

>Glyma15g06366.1   sequence type=predicted peptide   gene model=Glyma15g06366   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNMQGLTIERMIDEVEKYVEHLKLKYPYWNRTLGADHFFVTCHDIGVKATKGVPHLTKNSIRVACSSSYDDDDYVPHKDVTLPQVQLPFFHPPGENDIKNRNTFAFWAGRSDSRLKDDLMAMWDNDTELDIQNKS*







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