Glyma15g06360 - SoyBase

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Report for Sequence Feature Glyma15g06360

Feature Type:	gene_model
Chromosome:	Gm15
Start:	4498710
stop:	4505114
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g06360

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G64390	AT	Annotation by Michelle Graham. TAIR10: RNA-binding KH domain-containing protein \| chr5:25743442-25747380 FORWARD LENGTH=857	SoyBase	E_val: 7.00E-108	ISS
GO:0006397	GO-bp	Annotation by Michelle Graham. GO Biological Process: mRNA processing	SoyBase	N/A	ISS
GO:0010093	GO-bp	Annotation by Michelle Graham. GO Biological Process: specification of floral organ identity	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0003723	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA binding	SoyBase	N/A	ISS
KOG2190	KOG	PolyC-binding proteins alphaCP-1 and related KH domain proteins	JGI		ISS
PTHR10288	Panther	RNA-BINDING PROTEIN RELATED	JGI		ISS
PTHR10288:SF53	Panther	KH DOMAIN-CONTAINING PROTEIN	JGI		ISS
PF00013	PFAM	KH domain	JGI		ISS
UniRef100_G7IS62	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Heterogeneous nuclear ribonucleoprotein K n=1 Tax=Medicago truncatula RepID=G7IS62_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233B5FB	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233B5FB related cluster n=1 Tax=unknown RepID=UPI000233B5FB	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g06360

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g06360

Paralog	Evidence	Comments
Glyma13g32960	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g06360 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g058400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g06360

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma15g06360

Limit To All Plant Sequences

>Glyma15g06360.3   sequence type=transcript   gene model=Glyma15g06360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGGTTGGTTAACCCTAGGTGCAGTACGCGCACGATGCCCTTCTCCTCGGCGCATTTTAGCATAAGAATTCAGAACACTGTTTTTTGACTTTCTTCAACCCTTGTTGCCTGTTGGATAGCTTTACACAATTTCGAATTCCCACAGAGATAGAGAGAGAGAGAAGATATTATGGGAAGCAACTTTCTCTCTCCACCAGCTAAGCGCTCCGCACCCGACCCGTATCCGTTTCATCCAAACGGACCTTCAAAGCGCTCCAGGCAATCCAAGCCTCCGCCTCCGCTGTCCGTGCCGCCCGGCCACGTGGCCTTCCGCCTCCTCTGCAACGCCTCCCGAATCGGCGGCGTAATCGGCAAGTCCGGCTCCGTCATCAAAACTCTCCAGCAATCCACGGGCGCCAAGATCCGAATCGAGGATGCGCCACAGGAGTTGCCGGACCGCATCATCCTGGTAATTGCTGACGCCGCACTCAGCGGCAAGATTCTGCTGAGAAACGAAGAGGTCATTGAGGTGTCGAAGGCGCAGGAAGCGCTGCTGAAGGTGTTCGATAGGATCCTTCGAAGTGGCGGCGGAGACCGAAGCGTCGACGTTGGGGACAGGGTGATGTCTTGCCGGCTCGTGGCGGACGCGGCGCAGGCCGGCTCTGTCATCGGCAAGGGAGGGAAGGTGGTGGAGAGGATCAAGAAGGAAACCGGGTGTAAAATTAGGGTATTAACTGATGATTTGCCACTTTGTGCCTCCGCTTCCGATGAAATCATTGAGATAGAAGGCAGAGTGTCATCCGTAAAGAAGGCACTTGTTGCGGTCTCCCAACGTCTTCAAGATTGTCATCCTGTTGATAGAACAAAGATGATGGGGAGCAAACCTTATGAAATAGTTCAGTATGAAGCTTTAGATGCACTTCCTCGTGCAACTTCAACTGCAGCTCCACGTGTGACTTTAACTGCAGCTCCGCGTGGGACTTTAACTGCTGTACAACATGAGACTGTAGATCATCTTTTGCTGAGGAGCTCTGCACTGTCTACTTTATCCAGTTCCTCTAACAGCTATGCCACCAGAATTCATTCACTGCCAACAGAAGTTAATAGAGTCTCATCCTTGGAACCAAAAGCACTTAAGCAGGAAGTCACCTTCAGAATACTTTGTTCAAATGATAGAGTTGGAGGAGTTATTGGAAAGGGAGGCAATATTGTTAGAGCTCTTCAGAGTGAGACAGGGGCTACAATAAGTATTGGTCCTGCAGTAGCTGAGTGCGAGGATCGATTAATTACTATTGCTGCTTCAGAGAATCCTGAGTCAAGATATTCCCCTGCACAAAAGGCTGCTGTGCTTGTTTTCTCCAGGTCCATTGAGGTTGGTTTTGAGAAGGGGCTAGACTCTGGATTAAATAAGGGGTCAATTGTTACTGTACGTCTTGTAGTCCCATCAAGCCAAGTTGGTTGTTTGATAGGAAAAGGTGGAGTAATAGTTTCAGAAATGCGAAAGGCAACTGGGGCTAACATAAGAATAATTGGGACTGATCAGGTGCCAAAATGTGCATCAGATAATGATCAAGTCGTACAGATATCAGGAGAGTTTTCAAGTGTGCAAGATGCATTATATAATGCAATGGGTAGACTGCGAGATAATCTTTTTGTCAGCACACAGAATAGTGCTGGAACAAGGAGCCTTTCTTCTCTACGAGTTGATACCAGTCCCTATGGGAGACAGCAGGATGTTGTTCCTCTTGGAAGTCAACTGCCCCCAGCCACTTCTCATAGTCTGAGTAGACATACTTTTGCTCAAGGCATTGATCATCTTGGTCTTTCTAGAAATTTAGATCATCCTTCTTCACCAGGGTTATGGACTAGAAATTTAGACCGTCCTTCTTCACCAGGGTTATGGACTAGAAATTTAGATCGTCCTTCTTCACCGGGGTTATGGACTAGAAATTTAGATCGTCCTTCTTCACCGGGGTTATGGACTAGAAATTTAGATCGTCCTTCTTCACCAGGGTTATGGGCGCCACCAACAGTGGCTGGGATAAATTCCAGAGGCATTAATGATTTTAGTTTGGGATTGACATCTCGAAAAGGCGGCTTAGAACTTGTGAGTGGAAGTAAATCTGCTATCGTGACTAATACGATTGTAGAAATTGTGGTTCCTGATGATACTATTGACTGTGTATACGGGGAAAATGGTAGCAATTTGGCTCGTCTAAGACAGGTACACAAACTTGGATAAGTTTATATATGTATATTTTTTGTTTTCTTGTTCACCAGCTTACCATGTTATTCTTATGAAGTTGCATTTGTGATCACGAATTTGATTTGATTTCAATTATCTGTTTCAAGTTATCTATCTTTTAAGGAAAATTATTCTGTTTCAGCCTGTGTCATTTTTGAAAACCAAGAAAATGTGACTTTTTTTTTTATCGTTATCAACTTTATCTCTTGATATTTTGACTATAAATGGAAGGAGTGAGGACCCTGATGGAGTGACAATTTTTTAAAGATAAAATAGTCCAATGCTCTTACATTTTCAATAATTGAGGTGATTCAGTAACTTTTTAATCCTTTTGCAAATACATTAAATAACATATAATTTAAAATGCAGGGAGTATTTTCTCATGTTTTATATTTTTATTTACGAATATATTGTGAATTATTTTCGTTAGTCATCTATACTTTATTTATTGTCCTTAATTAGATATCGGGTGCCAATGTTGTTGTCCATGAGCCTCGTCCCGGAACAAGTGACAGGATTATTGTCATATCCGGTACACCAGATGAAACCCAAGCAGCGCAGAGCCTCCTCCAAGCATTTATTCTTAGTGGCTCATGACATATCTCCTTTCCAATTGCCCATTATTTAGTTTTGTTCACTGTATTGTTTTTCTGTTTTCCTTTTTCTCTCCACCCGAAATCATGTAACATCTAGCCTTGTATTATTCCCAAACAGTAGGTGTAGTAATTTAAAATCAATAACTTGATTCTTTAGTGCATACCAAAGTAAGTAAGCTTTTCATTATTAA

Coding sequences of Glyma15g06360

Limit To All Plant Sequences

>Glyma15g06360.2   sequence type=CDS   gene model=Glyma15g06360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAAGCAACTTTCTCTCTCCACCAGCTAAGCGCTCCGCACCCGACCCGTATCCGTTTCATCCAAACGGACCTTCAAAGCGCTCCAGGCAATCCAAGCCTCCGCCTCCGCTGTCCGTGCCGCCCGGCCACGTGGCCTTCCGCCTCCTCTGCAACGCCTCCCGAATCGGCGGCGTAATCGGCAAGTCCGGCTCCGTCATCAAAACTCTCCAGCAATCCACGGGCGCCAAGATCCGAATCGAGGATGCGCCACAGGAGTTGCCGGACCGCATCATCCTGGTAATTGCTGACGCCGCACTCAGCGGCAAGATTCTGCTGAGAAACGAAGAGGTCATTGAGGTGTCGAAGGCGCAGGAAGCGCTGCTGAAGGTGTTCGATAGGATCCTTCGAAGTGGCGGCGGAGACCGAAGCGTCGACGTTGGGGACAGGGTGATGTCTTGCCGGCTCGTGGCGGACGCGGCGCAGGCCGGCTCTGTCATCGGCAAGGGAGGGAAGGTGGTGGAGAGGATCAAGAAGGAAACCGGGTGTAAAATTAGGGTATTAACTGATGATTTGCCACTTTGTGCCTCCGCTTCCGATGAAATCATTGAGATAGAAGGCAGAGTGTCATCCGTAAAGAAGGCACTTGTTGCGGTCTCCCAACGTCTTCAAGATTGTCATCCTGTTGATAGAACAAAGATGATGGGGAGCAAACCTTATGAAATAGTTCAGTATGAAGCTTTAGATGCACTTCCTCGTGCAACTTCAACTGCAGCTCCACGTGTGACTTTAACTGCAGCTCCGCGTGGGACTTTAACTGCTGTACAACATGAGACTGTAGATCATCTTTTGCTGAGGAGCTCTGCACTGTCTACTTTATCCAGTTCCTCTAACAGCTATGCCACCAGAATTCATTCACTGCCAACAGAAGTTAATAGAGTCTCATCCTTGGAACCAAAAGCACTTAAGCAGGAAGTCACCTTCAGAATACTTTGTTCAAATGATAGAGTTGGAGGAGTTATTGGAAAGGGAGGCAATATTGTTAGAGCTCTTCAGAGTGAGACAGGGGCTACAATAAGTATTGGTCCTGCAGTAGCTGAGTGCGAGGATCGATTAATTACTATTGCTGCTTCAGAGAATCCTGAGTCAAGATATTCCCCTGCACAAAAGGCTGCTGTGCTTGTTTTCTCCAGGTCCATTGAGGTTGGTTTTGAGAAGGGGCTAGACTCTGGATTAAATAAGGGGTCAATTGTTACTGTACGTCTTGTAGTCCCATCAAGCCAAGTTGGTTGTTTGATAGGAAAAGGTGGAGTAATAGTTTCAGAAATGCGAAAGGCAACTGGGGCTAACATAAGAATAATTGGGACTGATCAGGTGCCAAAATGTGCATCAGATAATGATCAAGTCGTACAGATATCAGGAGAGTTTTCAAGTGTGCAAGATGCATTATATAATGCAATGGGTAGACTGCGAGATAATCTTTTTGTCAGCACACAGAATAGTGCTGGAACAAGGAGCCTTTCTTCTCTACGAGTTGATACCAGTCCCTATGGGAGACAGCAGGATGTTGTTCCTCTTGGAAGTCAACTGCCCCCAGCCACTTCTCATAGTCTGAGTAGACATACTTTTGCTCAAGGCATTGATCATCTTGGTCTTTCTAGAAATTTAGATCATCCTTCTTCACCAGGGTTATGGACTAGAAATTTAGACCGTCCTTCTTCACCAGGGTTATGGACTAGAAATTTAGATCGTCCTTCTTCACCGGGGTTATGGACTAGAAATTTAGATCGTCCTTCTTCACCGGGGTTATGGACTAGAAATTTAGATCGTCCTTCTTCACCAGGGTTATGGGCGCCACCAACAGTGGCTGGGATAAATTCCAGAGGCATTAATGATTTTAGTTTGGGATTGACATCTCGAAAAGGCGGCTTAGAACTTGTGAGTGGAAGTAAATCTGCTATCGTGACTAATACGATTGTAGAAATTGTGGTTCCTGATGATACTATTGACTGTGTATACGGGGAAAATGGTAGCAATTTGGCTCGTCTAAGACAGATATCGGGTGCCAATGTTGTTGTCCATGAGCCTCGTCCCGGAACAAGTGACAGGATTATTGTCATATCCGGTACACCAGATGAAACCCAAGCAGCGCAGAGCCTCCTCCAAGCATTTATTCTTAGTGGCTCATGA

>Glyma15g06360.3   sequence type=CDS   gene model=Glyma15g06360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAAGCAACTTTCTCTCTCCACCAGCTAAGCGCTCCGCACCCGACCCGTATCCGTTTCATCCAAACGGACCTTCAAAGCGCTCCAGGCAATCCAAGCCTCCGCCTCCGCTGTCCGTGCCGCCCGGCCACGTGGCCTTCCGCCTCCTCTGCAACGCCTCCCGAATCGGCGGCGTAATCGGCAAGTCCGGCTCCGTCATCAAAACTCTCCAGCAATCCACGGGCGCCAAGATCCGAATCGAGGATGCGCCACAGGAGTTGCCGGACCGCATCATCCTGGTAATTGCTGACGCCGCACTCAGCGGCAAGATTCTGCTGAGAAACGAAGAGGTCATTGAGGTGTCGAAGGCGCAGGAAGCGCTGCTGAAGGTGTTCGATAGGATCCTTCGAAGTGGCGGCGGAGACCGAAGCGTCGACGTTGGGGACAGGGTGATGTCTTGCCGGCTCGTGGCGGACGCGGCGCAGGCCGGCTCTGTCATCGGCAAGGGAGGGAAGGTGGTGGAGAGGATCAAGAAGGAAACCGGGTGTAAAATTAGGGTATTAACTGATGATTTGCCACTTTGTGCCTCCGCTTCCGATGAAATCATTGAGATAGAAGGCAGAGTGTCATCCGTAAAGAAGGCACTTGTTGCGGTCTCCCAACGTCTTCAAGATTGTCATCCTGTTGATAGAACAAAGATGATGGGGAGCAAACCTTATGAAATAGTTCAGTATGAAGCTTTAGATGCACTTCCTCGTGCAACTTCAACTGCAGCTCCACGTGTGACTTTAACTGCAGCTCCGCGTGGGACTTTAACTGCTGTACAACATGAGACTGTAGATCATCTTTTGCTGAGGAGCTCTGCACTGTCTACTTTATCCAGTTCCTCTAACAGCTATGCCACCAGAATTCATTCACTGCCAACAGAAGTTAATAGAGTCTCATCCTTGGAACCAAAAGCACTTAAGCAGGAAGTCACCTTCAGAATACTTTGTTCAAATGATAGAGTTGGAGGAGTTATTGGAAAGGGAGGCAATATTGTTAGAGCTCTTCAGAGTGAGACAGGGGCTACAATAAGTATTGGTCCTGCAGTAGCTGAGTGCGAGGATCGATTAATTACTATTGCTGCTTCAGAGAATCCTGAGTCAAGATATTCCCCTGCACAAAAGGCTGCTGTGCTTGTTTTCTCCAGGTCCATTGAGGTTGGTTTTGAGAAGGGGCTAGACTCTGGATTAAATAAGGGGTCAATTGTTACTGTACGTCTTGTAGTCCCATCAAGCCAAGTTGGTTGTTTGATAGGAAAAGGTGGAGTAATAGTTTCAGAAATGCGAAAGGCAACTGGGGCTAACATAAGAATAATTGGGACTGATCAGGTGCCAAAATGTGCATCAGATAATGATCAAGTCGTACAGATATCAGGAGAGTTTTCAAGTGTGCAAGATGCATTATATAATGCAATGGGTAGACTGCGAGATAATCTTTTTGTCAGCACACAGAATAGTGCTGGAACAAGGAGCCTTTCTTCTCTACGAGTTGATACCAGTCCCTATGGGAGACAGCAGGATGTTGTTCCTCTTGGAAGTCAACTGCCCCCAGCCACTTCTCATAGTCTGAGTAGACATACTTTTGCTCAAGGCATTGATCATCTTGGTCTTTCTAGAAATTTAGATCATCCTTCTTCACCAGGGTTATGGACTAGAAATTTAGACCGTCCTTCTTCACCAGGGTTATGGACTAGAAATTTAGATCGTCCTTCTTCACCGGGGTTATGGACTAGAAATTTAGATCGTCCTTCTTCACCGGGGTTATGGACTAGAAATTTAGATCGTCCTTCTTCACCAGGGTTATGGGCGCCACCAACAGTGGCTGGGATAAATTCCAGAGGCATTAATGATTTTAGTTTGGGATTGACATCTCGAAAAGGCGGCTTAGAACTTGTGAGTGGAAGTAAATCTGCTATCGTGACTAATACGATTGTAGAAATTGTGGTTCCTGATGATACTATTGACTGTGTATACGGGGAAAATGGTAGCAATTTGGCTCGTCTAAGACAGGTACACAAACTTGGATAA

Predicted protein sequences of Glyma15g06360

Limit To All Plant Sequences

>Glyma15g06360.2   sequence type=predicted peptide   gene model=Glyma15g06360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSNFLSPPAKRSAPDPYPFHPNGPSKRSRQSKPPPPLSVPPGHVAFRLLCNASRIGGVIGKSGSVIKTLQQSTGAKIRIEDAPQELPDRIILVIADAALSGKILLRNEEVIEVSKAQEALLKVFDRILRSGGGDRSVDVGDRVMSCRLVADAAQAGSVIGKGGKVVERIKKETGCKIRVLTDDLPLCASASDEIIEIEGRVSSVKKALVAVSQRLQDCHPVDRTKMMGSKPYEIVQYEALDALPRATSTAAPRVTLTAAPRGTLTAVQHETVDHLLLRSSALSTLSSSSNSYATRIHSLPTEVNRVSSLEPKALKQEVTFRILCSNDRVGGVIGKGGNIVRALQSETGATISIGPAVAECEDRLITIAASENPESRYSPAQKAAVLVFSRSIEVGFEKGLDSGLNKGSIVTVRLVVPSSQVGCLIGKGGVIVSEMRKATGANIRIIGTDQVPKCASDNDQVVQISGEFSSVQDALYNAMGRLRDNLFVSTQNSAGTRSLSSLRVDTSPYGRQQDVVPLGSQLPPATSHSLSRHTFAQGIDHLGLSRNLDHPSSPGLWTRNLDRPSSPGLWTRNLDRPSSPGLWTRNLDRPSSPGLWTRNLDRPSSPGLWAPPTVAGINSRGINDFSLGLTSRKGGLELVSGSKSAIVTNTIVEIVVPDDTIDCVYGENGSNLARLRQISGANVVVHEPRPGTSDRIIVISGTPDETQAAQSLLQAFILSGS*

>Glyma15g06360.3   sequence type=predicted peptide   gene model=Glyma15g06360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSNFLSPPAKRSAPDPYPFHPNGPSKRSRQSKPPPPLSVPPGHVAFRLLCNASRIGGVIGKSGSVIKTLQQSTGAKIRIEDAPQELPDRIILVIADAALSGKILLRNEEVIEVSKAQEALLKVFDRILRSGGGDRSVDVGDRVMSCRLVADAAQAGSVIGKGGKVVERIKKETGCKIRVLTDDLPLCASASDEIIEIEGRVSSVKKALVAVSQRLQDCHPVDRTKMMGSKPYEIVQYEALDALPRATSTAAPRVTLTAAPRGTLTAVQHETVDHLLLRSSALSTLSSSSNSYATRIHSLPTEVNRVSSLEPKALKQEVTFRILCSNDRVGGVIGKGGNIVRALQSETGATISIGPAVAECEDRLITIAASENPESRYSPAQKAAVLVFSRSIEVGFEKGLDSGLNKGSIVTVRLVVPSSQVGCLIGKGGVIVSEMRKATGANIRIIGTDQVPKCASDNDQVVQISGEFSSVQDALYNAMGRLRDNLFVSTQNSAGTRSLSSLRVDTSPYGRQQDVVPLGSQLPPATSHSLSRHTFAQGIDHLGLSRNLDHPSSPGLWTRNLDRPSSPGLWTRNLDRPSSPGLWTRNLDRPSSPGLWTRNLDRPSSPGLWAPPTVAGINSRGINDFSLGLTSRKGGLELVSGSKSAIVTNTIVEIVVPDDTIDCVYGENGSNLARLRQVHKLG*

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