SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G64340 | AT | Annotation by Michelle Graham. TAIR10: sequence-specific DNA binding transcription factors;transcription regulators | chr5:25730890-25731936 REVERSE LENGTH=348 | SoyBase | E_val: 8.00E-24 | ISS |
| GO:0000271 | GO-bp | Annotation by Michelle Graham. GO Biological Process: polysaccharide biosynthetic process | SoyBase | N/A | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0007155 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell adhesion | SoyBase | N/A | ISS |
| GO:0009825 | GO-bp | Annotation by Michelle Graham. GO Biological Process: multidimensional cell growth | SoyBase | N/A | ISS |
| GO:0009826 | GO-bp | Annotation by Michelle Graham. GO Biological Process: unidimensional cell growth | SoyBase | N/A | ISS |
| GO:0009855 | GO-bp | Annotation by Michelle Graham. GO Biological Process: determination of bilateral symmetry | SoyBase | N/A | ISS |
| GO:0009887 | GO-bp | Annotation by Michelle Graham. GO Biological Process: organ morphogenesis | SoyBase | N/A | ISS |
| GO:0009932 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell tip growth | SoyBase | N/A | ISS |
| GO:0010051 | GO-bp | Annotation by Michelle Graham. GO Biological Process: xylem and phloem pattern formation | SoyBase | N/A | ISS |
| GO:0010075 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of meristem growth | SoyBase | N/A | ISS |
| GO:0010090 | GO-bp | Annotation by Michelle Graham. GO Biological Process: trichome morphogenesis | SoyBase | N/A | ISS |
| GO:0010413 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glucuronoxylan metabolic process | SoyBase | N/A | ISS |
| GO:0010817 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of hormone levels | SoyBase | N/A | ISS |
| GO:0043481 | GO-bp | Annotation by Michelle Graham. GO Biological Process: anthocyanin accumulation in tissues in response to UV light | SoyBase | N/A | ISS |
| GO:0045010 | GO-bp | Annotation by Michelle Graham. GO Biological Process: actin nucleation | SoyBase | N/A | ISS |
| GO:0045492 | GO-bp | Annotation by Michelle Graham. GO Biological Process: xylan biosynthetic process | SoyBase | N/A | ISS |
| GO:0048439 | GO-bp | Annotation by Michelle Graham. GO Biological Process: flower morphogenesis | SoyBase | N/A | ISS |
| GO:0048519 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of biological process | SoyBase | N/A | ISS |
| GO:0048765 | GO-bp | Annotation by Michelle Graham. GO Biological Process: root hair cell differentiation | SoyBase | N/A | ISS |
| GO:0048767 | GO-bp | Annotation by Michelle Graham. GO Biological Process: root hair elongation | SoyBase | N/A | ISS |
| GO:0071555 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell wall organization | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| UniRef100_G7IPM4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Transcription factor bHLH143 n=2 Tax=Medicago truncatula RepID=G7IPM4_MEDTR | SoyBase | E_val: 3.00E-137 | ISS |
| UniRef100_G7IPM4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor bHLH143 n=2 Tax=Medicago truncatula RepID=G7IPM4_MEDTR | SoyBase | E_val: 3.00E-137 | ISS |
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Glyma15g06196 not represented in the dataset |
Glyma15g06196 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.15g056600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma15g06196.1 sequence type=CDS gene model=Glyma15g06196 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTTAAGGATCACAGGTCTTGGCCTTACCCACAGCATGTGGCTTGGCCATCACCTTACTTAAATTGCTCCTGCACCTCGGCAGAGCCCAGTTCGCAGGTTCATTCAGCTTATATGAACCCCAGCACATGCATCTTTCCTGCTGTCAGCGTGTTTCCAGGATTCACAGCTCCTGCTCTCCCAAACTGGAAGACTGAGCAGACCAATGAAGTGCATGGGTTCCATCAGTATCCTCATTCAGAACCATATTTGAAAGAAACACATACTGGAGGGGCTATGCAAAATGCAAATCATGCATCTTTCCAGAAGAAGTTACTTATTTTTGACCACTCTGGTAGTAAGACAAGGATGCTTTATAGTCCTGTCTTCTCTCTTGTCCAAAGTCCAACTGTTACTGCTACAAAATTTGCTCAAGTTTATCATGTAAACATGGAAGCACAGGCAACTAATATGGGCCAAAAGCATTTACCCATATACACTTCACCCGAAGAGACTGGTAAAGATCATATAGACAATGAAGAAAGTGAAATGCATGAAGACACAGAAGAAATCAATGCATTGCTTTATTCTGATGATGATGATGATGATGAGGTAACAAGTACTGGTCATTCTCCATTGGTTACAAAAAGAACTTATGTGATGCAAGAACAGTTTGCAGGCATGAAGAAGGAGGTTGCTGGCTCTGATTGGCCAAACAAAAGGCAGAAGTTAATTGATAGTGGATACAATACACTACCACCACTCATGGACAGTGCTAGTTCCGAAAGGCTAAATGAAATGTGCGAGTATGCCAGTGATGCTGAATCAAAGTATTCTAGTAGTGGCGGGGTGTATGCTGCAAGGCAAACTAAAGAAGATAATCCAACACCTGCTGATATTCAATTGAAAAAGGATAAAATCCGTGAATTGTTGAGAGTTCTCGAGAACTTTATTCCTGGAGCAAAAGGAAAGCATCCCCTGTTAGTCATTGATGGTACTATTGAGTACTTGAAATCTTTGGCGTCCCAAGCTGGTACACTGAAATATCACTAA
>Glyma15g06196.1 sequence type=predicted peptide gene model=Glyma15g06196 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVKDHRSWPYPQHVAWPSPYLNCSCTSAEPSSQVHSAYMNPSTCIFPAVSVFPGFTAPALPNWKTEQTNEVHGFHQYPHSEPYLKETHTGGAMQNANHASFQKKLLIFDHSGSKTRMLYSPVFSLVQSPTVTATKFAQVYHVNMEAQATNMGQKHLPIYTSPEETGKDHIDNEESEMHEDTEEINALLYSDDDDDDEVTSTGHSPLVTKRTYVMQEQFAGMKKEVAGSDWPNKRQKLIDSGYNTLPPLMDSASSERLNEMCEYASDAESKYSSSGGVYAARQTKEDNPTPADIQLKKDKIRELLRVLENFIPGAKGKHPLLVIDGTIEYLKSLASQAGTLKYH*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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