Report for Sequence Feature Glyma15g06100
Feature Type: gene_model
Chromosome: Gm15
Start: 4323598
stop: 4329890
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma15g06100
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G12200 AT
Annotation by Michelle Graham. TAIR10: pyrimidine 2 | chr5:3941700-3944727 REVERSE LENGTH=531
SoyBase E_val: 0 ISS
GO:0006208 GO-bp
Annotation by Michelle Graham. GO Biological Process: pyrimidine nucleobase catabolic process
SoyBase N/A ISS
GO:0006212 GO-bp
Annotation by Michelle Graham. GO Biological Process: uracil catabolic process
SoyBase N/A ISS
GO:0006635 GO-bp
Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation
SoyBase N/A ISS
GO:0016558 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein import into peroxisome matrix
SoyBase N/A ISS
GO:0043562 GO-bp
Annotation by Michelle Graham. GO Biological Process: cellular response to nitrogen levels
SoyBase N/A ISS
GO:0005783 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum
SoyBase N/A ISS
GO:0005794 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus
SoyBase N/A ISS
GO:0012505 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: endomembrane system
SoyBase N/A ISS
GO:0004157 GO-mf
Annotation by Michelle Graham. GO Molecular Function: dihydropyrimidinase activity
SoyBase N/A ISS
GO:0016787 GO-mf
Annotation by Michelle Graham. GO Molecular Function: hydrolase activity
SoyBase N/A ISS
GO:0016810 GO-mf
Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
SoyBase N/A ISS
GO:0016812 GO-mf
Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
SoyBase N/A ISS
KOG2584
KOG
Dihydroorotase and related enzymes
JGI ISS
PTHR11647 Panther
AMINOHYDROLASE
JGI ISS
PTHR11647:SF1 Panther
STROMAL CELL-DERIVED FACTOR 2-RELATED
JGI ISS
PF01979 PFAM
Amidohydrolase family
JGI ISS
UniRef100_G7K315 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Dihydropyrimidinase n=1 Tax=Medicago truncatula RepID=G7K315_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1MDY5 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MDY5_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma15g06100
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma15g06100
Paralog Evidence Comments
Glyma08g18920 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma15g06100 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.15g055500 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma15g06100
Coding sequences of Glyma15g06100
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma15g06100.1 sequence type=CDS gene model=Glyma15g06100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCCATGGGATTGACCTCACAACTCCTCCTTTCTTTGTTCATCAGTACCCTTCTTCTTCTTCTTCCCTCTTCCCTTTCACAATCTAACCAGTTTTGTGACGCTGGAACTTCATCCAAGCTGTTGATCAAGGGCGGCACCGTTGTGAATGCTCACCACCAACAGGTTGCCGATGTCTATGTCGAAGATGGTATCATTGTTGCCATCAATCCCACTATTACGGTTGGAGATGAGGTGACGGTCATAGATGCCACTGGCAAGTTTGTCATGCCAGGGGGCATTGACCCTCACACCCACCTAGAGTTTGAGTTTATGGATACGGAAACTGTAGATGACTTCTTCAGTGGTCAGGCTGCAGCATTAGCTGGTGGGACAACAATGCACATTGACTTTGTTATACCACATAAAGGAAGTTTAACGGCTGGTTTTGAAGCCTATGAAAAGAAGGCAAAGAAGTCTTGCATGGATTATGGTTTCCATATGGCTATTACCAAATGGGATGAAACTGTGTCAAGAGAAATGGAGCTCATGGTCAAGGAGAAAGGCATCAACTCTTTTAAGTTTTTCATGGCATACAAAGGAGCTCTTATGATCAATGATGAGCTTCTTCTGGAAGGATTTAAAAAGTGCAAGTCTCTTGGTGCCTTAGCTATGGTCCATGCAGAAAATGGAGATGCTGTGTACGAAGGTCAGGAAAAAATGATAGAACTTGGAATAACTGGTCCTGAGGGACATGCTCTTTCACGGCCTGCAGTGTTGGAAGGAGAGGCAACTGCCCGTGCTATTCGTTTAGCTGATTTTGTGAACACTCCTTTATATGTGGTTCATGTAATGAGCATTGATGCAATGGAAGAAATTGCTAAGGCCCGGAAATCAGGACAAAGGGTAATTGGAGAGCCCGTTGCCTCTGGGTTAGCCCTTGATGAATCTTGGCTTTGGCATCCTGACTTTGAGACTGCTGCAAAGTATGTCATGAGTCCCCCTATTAGGAAACGAGGACATGATAAGGCCCTTCAAGCTGCCCTTTCAACAGGAGTTTTGCAGCTGGTAGGAACTGATCATTGTGCCTTTAATTCCACCCAGAAAGCTCTTGGAATTGATGACTTCCGGAAAATTCCTAATGGTGTCAATGGTATTGAAGAAAGGATGCATTTGGTATGGGATATCATGGTGGAATCTGGCCAAATATCTGTCACTGACTATGTCCGGTTGACAAGCACTGAATGTGCTAGAATCTTCAATATATATCCAAGGAAAGGAGCTATTCTTCCAGGATCTGATGCAGATATTATCATCCTCAATCCAAATTCAACCTTTGAGATAACTGCAAAGTCCCACCACTCCAAACTGGACACAAATGTCTATGAGGGAAGGAGTGGAAAGGGAAAAATCGAAGTGACTATTGCAGGAGGAAGAGTTGTTTGGGAAAATAATGAACTGAAGGTTGCTCCTGGTACTGGCAGATATATAAAAATGCCACCCTTTAGTTATCTGTTTAACGGAATTGACAAAAAGGATGCCTTTTATCTAAATTCCCTCCAAGCCCCAGTAAAGCGAGCCAAATCTAACACTTAA
Predicted protein sequences of Glyma15g06100
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma15g06100.1 sequence type=predicted peptide gene model=Glyma15g06100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAMGLTSQLLLSLFISTLLLLLPSSLSQSNQFCDAGTSSKLLIKGGTVVNAHHQQVADVYVEDGIIVAINPTITVGDEVTVIDATGKFVMPGGIDPHTHLEFEFMDTETVDDFFSGQAAALAGGTTMHIDFVIPHKGSLTAGFEAYEKKAKKSCMDYGFHMAITKWDETVSREMELMVKEKGINSFKFFMAYKGALMINDELLLEGFKKCKSLGALAMVHAENGDAVYEGQEKMIELGITGPEGHALSRPAVLEGEATARAIRLADFVNTPLYVVHVMSIDAMEEIAKARKSGQRVIGEPVASGLALDESWLWHPDFETAAKYVMSPPIRKRGHDKALQAALSTGVLQLVGTDHCAFNSTQKALGIDDFRKIPNGVNGIEERMHLVWDIMVESGQISVTDYVRLTSTECARIFNIYPRKGAILPGSDADIIILNPNSTFEITAKSHHSKLDTNVYEGRSGKGKIEVTIAGGRVVWENNELKVAPGTGRYIKMPPFSYLFNGIDKKDAFYLNSLQAPVKRAKSNT*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
