Glyma15g06090 - SoyBase

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Report for Sequence Feature Glyma15g06090

Feature Type:	gene_model
Chromosome:	Gm15
Start:	4320088
stop:	4322285
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g06090

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G19473	AT	Annotation by Michelle Graham. TAIR10: RPM1-interacting protein 4 (RIN4) family protein \| chr5:6569268-6570680 FORWARD LENGTH=99	SoyBase	E_val: 2.00E-25	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF05627	PFAM	Cleavage site for pathogenic type III effector avirulence factor Avr	JGI		ISS
UniRef100_F4K158	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: RPM1-interacting protein 4 (RIN4) family protein n=1 Tax=Arabidopsis thaliana RepID=F4K158_ARATH	SoyBase	E_val: 1.00E-22	ISS
UniRef100_I1MDY4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1MDY4_SOYBN	SoyBase	E_val: 2.00E-67	ISS

Expression Patterns of Glyma15g06090

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma15g06090 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g055400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g06090

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma15g06090

Limit To All Plant Sequences

>Glyma15g06090.2   sequence type=transcript   gene model=Glyma15g06090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGAACGTCCATTATGTAAAAAGCGAGAGAAAAATATTGACATACTTCATTTAAAAAAATATATATTGACTTACTTAAAAGTGGCGCATACCAGAAATTAGATTGGCAAGTTAGTTAGTTGTTTTGCATTTTATTTGTTGTGAACTTTTCTTTGGTGAAAAACTGTAAATATTTTTATCTGGCATAGAATAACCATCTTATATTTCTCATAAACTTGGACAATATCGTACTTTAATTTGCACAAACTCATAACAGAAGGAAAGCAGCAGGTGGACAACCATATTTTTTTGTCCTACTTTAACTCTAATCACAAGACTCGATACCTACAAACACGTTAATTCCATTGATCCCCTCATTGAAGTTAAGATATTTTGAGTACAAAGCATAACAGAATGTTTAATTTTATCCTAATTTCTCATAGTTAAAATACTCCATCACTACAACATCTAGACACCCTCTAATTATATCTTGAAAAGGTAGTAGTGTAAAAACCTTAATTTGTATCATAGTCGTAGCTCAATTCCCAAGGTCCCTTGCTTCTCCATTCTGTCATGGAACAAAAGCAGCAAAGACCTGCTATGATGTCTGTGCCTCAGTTTGGAGGGTGGGACCAAAAAGCACCAGGAGCTACTGACTATTCGATGGTGTTCACCCAAGCTCGTGCAAACAAAAAGCAGCAGAAGACCAACCTCACTGAAATAAAACATAGAAGTCTTGGGAATGAAAGGGACATAGCTAATGCCAAACATGGCAAAGCTCATCATCATCATCATGTTCACGGTCATTCTCATGCTCATGAGGAACCTCTTGTCGTGGGGAAAAAGAAGATCCTAACCTACGTAAATTGTTGTATTAGACCGTGATGTGTTATGAAACATACTACCACAGACACTCATTGATTTTTAAATCAATGATATGGAATTAAAGCTCGGGGGATTTATGACTTGTAAAATATGTACGTAGACGAGACAAGTTCAATAGAAACCTGACCAACTTCTGTAATCTAAGTGTGCTACATATTGTACAGTGTCTTATTATTGTCTCTTTTTTGCTAAGAGCTTTAGACAATAAGCAATGTACATTACATGAGTGGAAAAGTTAACGTGAAGCGTATCTATTGTCTATTGTAATATACTTATGATATTAATATACATATTTTACTTTATTTGATAAAAAAAAA

Coding sequences of Glyma15g06090

Limit To All Plant Sequences

>Glyma15g06090.1   sequence type=CDS   gene model=Glyma15g06090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGTCTGTGCCTCAGTTTGGAGGGTGGGACCAAAAAGCACCAGGAGCTACTGACTATTCGATGGTGTTCACCCAAGCTCGTGCAAACAAAAAGCAGCAGAAGACCAACCTCACTGAAATAAAACATAGAAGTCTTGGGAATGAAAGGGACATAGCTAATGCCAAACATGGCAAAGCTCATCATCATCATCATGTTCACGGTCATTCTCATGCTCATGAGGAACCTCTTGTCGTGGGGAAAAAGAAGATCCTAACCTACGTAAATTGTTGTATTAGACCGTGA

>Glyma15g06090.2   sequence type=CDS   gene model=Glyma15g06090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAACAAAAGCAGCAAAGACCTGCTATGATGTCTGTGCCTCAGTTTGGAGGGTGGGACCAAAAAGCACCAGGAGCTACTGACTATTCGATGGTGTTCACCCAAGCTCGTGCAAACAAAAAGCAGCAGAAGACCAACCTCACTGAAATAAAACATAGAAGTCTTGGGAATGAAAGGGACATAGCTAATGCCAAACATGGCAAAGCTCATCATCATCATCATGTTCACGGTCATTCTCATGCTCATGAGGAACCTCTTGTCGTGGGGAAAAAGAAGATCCTAACCTACGTAAATTGTTGTATTAGACCGTGA

Predicted protein sequences of Glyma15g06090

Limit To All Plant Sequences

>Glyma15g06090.1   sequence type=predicted peptide   gene model=Glyma15g06090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMSVPQFGGWDQKAPGATDYSMVFTQARANKKQQKTNLTEIKHRSLGNERDIANAKHGKAHHHHHVHGHSHAHEEPLVVGKKKILTYVNCCIRP*

>Glyma15g06090.2   sequence type=predicted peptide   gene model=Glyma15g06090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEQKQQRPAMMSVPQFGGWDQKAPGATDYSMVFTQARANKKQQKTNLTEIKHRSLGNERDIANAKHGKAHHHHHVHGHSHAHEEPLVVGKKKILTYVNCCIRP*

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