Glyma15g06050 - SoyBase

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Report for Sequence Feature Glyma15g06050

Feature Type:	gene_model
Chromosome:	Gm15
Start:	4295462
stop:	4306332
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g06050

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G14050	AT	Annotation by Michelle Graham. TAIR10: minichromosome maintenance 9 \| chr2:5909240-5913817 FORWARD LENGTH=646	SoyBase	E_val: 0	ISS
GO:0006260	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA replication	SoyBase	N/A	ISS
GO:0006270	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA replication initiation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0008094	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA-dependent ATPase activity	SoyBase	N/A	ISS
GO:0017111	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity	SoyBase	N/A	ISS
KOG0477	KOG	DNA replication licensing factor, MCM2 component	JGI		ISS
PTHR11630	Panther	DNA REPLICATION LICENSING FACTOR	JGI		ISS
PTHR11630:SF48	Panther	DNA REPLICATION LICENSING FACTOR MCM1	JGI		ISS
PF00493	PFAM	MCM2/3/5 family	JGI		ISS
UniRef100_B9SIK6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Minichromosome maintenance protein MCM, putative n=1 Tax=Ricinus communis RepID=B9SIK6_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI000233B5F1	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233B5F1 related cluster n=1 Tax=unknown RepID=UPI000233B5F1	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g06050

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g06050 not represented in the dataset	Glyma15g06050 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma15g06050 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g055000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g06050

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma15g06050

Limit To All Plant Sequences

>Glyma15g06050.3   sequence type=transcript   gene model=Glyma15g06050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGCAAGTAGGTTAGAAAAATGTGGCGCGTTGATTCCTTTGGCGCCCAACGTAGTTAGTGTGAGAGTGTGCAGAGCAGAAGCATGGAGAAGGAGAAGGAGAACTGGGAGATGCCAATGGCCACCTTTCTCATAGACCACCATTCCGACCAGCTCCGCTCCATCTCTTCTTCTCCGGATCCCAACCTTCACTTCCCTCTTTTCATCGATTACGCTGAGTTGATGGAGGATAATCCTCGCATTGCACGTCTCCTCTTTGCCCAACCCAAAACCTACTTGCCAGTATTCGATGATGCTGCCCTTTGGGCCCATAAAATCGTATTGCGAGAAATGCCGGATGACAAGAAGGGGGTTGAGAAAAAATTCATTCATGTTCGTATTAACATCAGTGGCTCACCCCTTGAATGCCCTGAAACTTTTCCAAGCATAGGGCGTGTTCGAGTGCACCACCGTGGAATTCTTCTCACTCTCAAGGGGATAGTTATCAGGTCAGGAGCAATCAAGATGCATGAAGGGGAGAGGAAGTATATTTGCCAAAAATGCAAAAACAGCTTCCCAGTTTATCCCGAGGTGGAAGCTCGAAACTCCATATCACTACCTTCAATTTGCCCAATTCAGCAGTCCAAGCCCTGTGGTGGCACAAAATTCCAGTATGAAGAGAATACTATAGTATGCCATGATTATCAGGAGATAAAGATTCAAGAAAGTACACAGGTGCTAGGTGTTGGGGCAATTCCTCGTTCAATTCTTGTCATCTTAAAGGATGACCTTGTGGATGTTGTTAAAGCTGGAGATGATGTGATTGTCACTGGTCTCTTAACAGCAAAATGGTCTCCAGAGTTGAAAGATGTGCGCTGTGACCTTGATCCTGTATTAATTGCCAACAATATAAGGAGAATCAATGAACTGAAGTCAGAAATTGATATTTCTGATGATATGGTTAAGAAATTCGAGCAGTTTTGGGTTCACTTCAAAGATTCACCTCTAAAAGGGAGGAATGCTATTCTACGAGCAATTTGCCCACAAGTATTTGGCCTTTTCACTGTCAAGCTGGCTGTTGCATTAACACTTATCGGAGGTGTGCAACATGTTGATGCTTCTGGAACTAGGGTAAGAGGGGAGTCCCACTTACTCTTGGTTGGTGATCCTGGCACCGGAAAATCTCAGTTTCTTAAATTTGCTGCAAAATTGAGCAACCGTTCTGTTATTACCACTGGGTTGGGAAGCACAAGTGCAGGATTGACTGTTACTGCAGTGAAGGATGGAGGGGAATGGATGTTAGAAGCTGGGGCTCTTGTTTTAGCAGATGGAGGCTTGTGTTGCATTGATGAATTTGATAGTATGAGGGAACATGATAGAGCAACTATACATGAAGCCATGGAGCAGCAGACAATAAGTGTTGCCAAGGCTGGTCTTGTAACAACACTAAGCACTAGAACAACTGTATTTGGCGCCACAAATCCCAAAGGACAGTATGATCCTGATCAACCTCTGTCCATCAATACAACACTCTCTGGTCCTTTATTAAGCAGGTTTGATATTGTCCTTGTTCTCTTGGATACAAAAAATCCTGATTGGGATGCAGTAGTTTCATCTCATATTCTTTCTGAGGCAGAACTGGATAGAACCACCAATGATGAAGATCTGGTAAACAGCTGGCCACTTCCTACACTCAAGAGGTACATACACTATGTGAAAGAACATTTCAGACCAGTCCTTACGAGAGAGGCTGAAATAGTTATATCTAGCTATTATCAACTTCAAAGGAAATCTGCTACTCATAATGCAGCTAGAACAACTGTCCGTATGTTGGAAAGTTTGATACGCCTAGCTCAAGCCCATGCAAGGTTGATGTTCAGAAATGAGGTGACTCGACTAGATGCCATCACGGCTATTTTATGCATAGAATCCTCCATGACTACCTCAGCTATTGTGGATTGCATTGGGAATGCTCTGCATTCCAATTTTACTGACAACCCTGATCAGGAATATGCGAGGCAAGAAAGATTGATCCTAGAAAAATTGGGATCAATAGACGACATTTGATGAATAGCATGGAGGAGTGAACGCAGAGAAAGGAAAACAAGATGGAAGAGTCATGTTGTATCATGAAGTGCTGCCTCTGGTTGAGCACTTCTGAGATATTTGACCGTCGATTTGCACGACTATCATTCAGTTCACAAGCTACCTTGTAGCGAATTATCTAGTTTCCTTCCCGATGTATATGATGTTAATGGAGTTGCAAGCTTTACGAATCAAAACAAATTAATTCTATGGAAAGATTCCAAAAGTTACATATCGAACTTAAGACTATCAAGAATCAATTTGTAACACAACCAATCCAAATCCCTTTTTCTTTCAAGTACTAATTGCATACTCCTTTTCTTTCAACAAGTTAAGCACTCGTTTGTACTGGGATCAATCAAGTTGGATTTAGATGGGGTAGGGCTCTATT

Coding sequences of Glyma15g06050

Limit To All Plant Sequences

>Glyma15g06050.2   sequence type=CDS   gene model=Glyma15g06050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGAAGGAGAAGGAGAACTGGGAGATGCCAATGGCCACCTTTCTCATAGACCACCATTCCGACCAGCTCCGCTCCATCTCTTCTTCTCCGGATCCCAACCTTCACTTCCCTCTTTTCATCGATTACGCTGAGTTGATGGAGGATAATCCTCGCATTGCACGTCTCCTCTTTGCCCAACCCAAAACCTACTTGCCAGTATTCGATGATGCTGCCCTTTGGGCCCATAAAATCGTATTGCGAGAAATGCCGGATGACAAGAAGGGGGTTGAGAAAAAATTCATTCATGTTCGTATTAACATCAGTGGCTCACCCCTTGAATGCCCTGAAACTTTTCCAAGCATAGGGCGTGTTCGAGTGCACCACCGTGGAATTCTTCTCACTCTCAAGGGGATAGTTATCAGGTCAGGAGCAATCAAGATGCATGAAGGGGAGAGGAAGTATATTTGCCAAAAATGCAAAAACAGCTTCCCAGTTTATCCCGAGGTGGAAGCTCGAAACTCCATATCACTACCTTCAATTTGCCCAATTCAGCAGTCCAAGCCCTGTGGTGGCACAAAATTCCAGTATGAAGAGAATACTATAGTATGCCATGATTATCAGGAGATAAAGATTCAAGAAAGTACACAGGTGCTAGGTGTTGGGGCAATTCCTCGTTCAATTCTTGTCATCTTAAAGGATGACCTTGTGGATGTTGTTAAAGCTGGAGATGATGTGATTGTCACTGGTCTCTTAACAGCAAAATGGTCTCCAGAGTTGAAAGATGTGCGCTGTGACCTTGATCCTGTATTAATTGCCAACAATATAAGGAGAATCAATGAACTGAAGTCAGAAATTGATATTTCTGATGATATGGTTAAGAAATTCGAGCAGTTTTGGGTTCACTTCAAAGATTCACCTCTAAAAGGGAGGAATGCTATTCTACGAGCAATTTGCCCACAAGTATTTGGCCTTTTCACTGTCAAGCTGGCTGTTGCATTAACACTTATCGGAGGTGTGCAACATGTTGATGCTTCTGGAACTAGGGTAAGAGGGGAGTCCCACTTACTCTTGGTTGGTGATCCTGGCACCGGAAAATCTCAGTTTCTTAAATTTGCTGCAAAATTGAGCAACCGTTCTGTTATTACCACTGGGTTGGGAAGCACAAGTGCAGGATTGACTGTTACTGCAGTGAAGGATGGAGGGGAATGGATGTTAGAAGCTGGGGCTCTTGTTTTAGCAGATGGAGGCTTGTGTTGCATTGATGAATTTGATAGTATGAGGGAACATGATAGAGCAACTATACATGAAGCCATGGAGCAGCAGACAATAAGTGTTGCCAAGGCTGGTCTTGTAACAACACTAAGCACTAGAACAACTGTATTTGGCGCCACAAATCCCAAAGGACAGTATGATCCTGATCAACCTCTGTCCATCAATACAACACTCTCTGGTCCTTTATTAAGCAGGTTTGATATTGTCCTTGTTCTCTTGGATACAAAAAATCCTGATTGGGATGCAGTAGTTTCATCTCATATTCTTTCTGAGGCAGAACTGGATAGAACCACCAATGATGAAGATCTGGTAAACAGCTGGCCACTTCCTACACTCAAGAGGTACATACACTATGTGAAAGAACATTTCAGACCAGTCCTTACGAGAGAGGCTGAAATAGTTATATCTAGCTATTATCAACTTCAAAGGAAATCTGCTACTCATAATGCAGCTAGAACAACTGTCCGTATGTTGGAAAGTTTGATACGCCTAGCTCAAGCCCATGCAAGGTTGATGTTCAGAAATGAGGTGACTCGACTAGATGCCATCACGGCTATTTTATGCATAGAATCCTCCATGACTACCTCAGCTATTGTGGATTGCATTGGGAATGCTCTGCATTCCAATTTTACTGACAACCCTGATCAGGAATATGCGAGGCAAGAAAGATTGATCCTAGAAAAATTGGGATCAATAGACGACATTTGA

>Glyma15g06050.3   sequence type=CDS   gene model=Glyma15g06050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGAAGGAGAAGGAGAACTGGGAGATGCCAATGGCCACCTTTCTCATAGACCACCATTCCGACCAGCTCCGCTCCATCTCTTCTTCTCCGGATCCCAACCTTCACTTCCCTCTTTTCATCGATTACGCTGAGTTGATGGAGGATAATCCTCGCATTGCACGTCTCCTCTTTGCCCAACCCAAAACCTACTTGCCAGTATTCGATGATGCTGCCCTTTGGGCCCATAAAATCGTATTGCGAGAAATGCCGGATGACAAGAAGGGGGTTGAGAAAAAATTCATTCATGTTCGTATTAACATCAGTGGCTCACCCCTTGAATGCCCTGAAACTTTTCCAAGCATAGGGCGTGTTCGAGTGCACCACCGTGGAATTCTTCTCACTCTCAAGGGGATAGTTATCAGGTCAGGAGCAATCAAGATGCATGAAGGGGAGAGGAAGTATATTTGCCAAAAATGCAAAAACAGCTTCCCAGTTTATCCCGAGGTGGAAGCTCGAAACTCCATATCACTACCTTCAATTTGCCCAATTCAGCAGTCCAAGCCCTGTGGTGGCACAAAATTCCAGTATGAAGAGAATACTATAGTATGCCATGATTATCAGGAGATAAAGATTCAAGAAAGTACACAGGTGCTAGGTGTTGGGGCAATTCCTCGTTCAATTCTTGTCATCTTAAAGGATGACCTTGTGGATGTTGTTAAAGCTGGAGATGATGTGATTGTCACTGGTCTCTTAACAGCAAAATGGTCTCCAGAGTTGAAAGATGTGCGCTGTGACCTTGATCCTGTATTAATTGCCAACAATATAAGGAGAATCAATGAACTGAAGTCAGAAATTGATATTTCTGATGATATGGTTAAGAAATTCGAGCAGTTTTGGGTTCACTTCAAAGATTCACCTCTAAAAGGGAGGAATGCTATTCTACGAGCAATTTGCCCACAAGTATTTGGCCTTTTCACTGTCAAGCTGGCTGTTGCATTAACACTTATCGGAGGTGTGCAACATGTTGATGCTTCTGGAACTAGGGTAAGAGGGGAGTCCCACTTACTCTTGGTTGGTGATCCTGGCACCGGAAAATCTCAGTTTCTTAAATTTGCTGCAAAATTGAGCAACCGTTCTGTTATTACCACTGGGTTGGGAAGCACAAGTGCAGGATTGACTGTTACTGCAGTGAAGGATGGAGGGGAATGGATGTTAGAAGCTGGGGCTCTTGTTTTAGCAGATGGAGGCTTGTGTTGCATTGATGAATTTGATAGTATGAGGGAACATGATAGAGCAACTATACATGAAGCCATGGAGCAGCAGACAATAAGTGTTGCCAAGGCTGGTCTTGTAACAACACTAAGCACTAGAACAACTGTATTTGGCGCCACAAATCCCAAAGGACAGTATGATCCTGATCAACCTCTGTCCATCAATACAACACTCTCTGGTCCTTTATTAAGCAGGTTTGATATTGTCCTTGTTCTCTTGGATACAAAAAATCCTGATTGGGATGCAGTAGTTTCATCTCATATTCTTTCTGAGGCAGAACTGGATAGAACCACCAATGATGAAGATCTGGTAAACAGCTGGCCACTTCCTACACTCAAGAGGTACATACACTATGTGAAAGAACATTTCAGACCAGTCCTTACGAGAGAGGCTGAAATAGTTATATCTAGCTATTATCAACTTCAAAGGAAATCTGCTACTCATAATGCAGCTAGAACAACTGTCCGTATGTTGGAAAGTTTGATACGCCTAGCTCAAGCCCATGCAAGGTTGATGTTCAGAAATGAGGTGACTCGACTAGATGCCATCACGGCTATTTTATGCATAGAATCCTCCATGACTACCTCAGCTATTGTGGATTGCATTGGGAATGCTCTGCATTCCAATTTTACTGACAACCCTGATCAGGAATATGCGAGGCAAGAAAGATTGATCCTAGAAAAATTGGGATCAATAGACGACATTTGA

Predicted protein sequences of Glyma15g06050

Limit To All Plant Sequences

>Glyma15g06050.2   sequence type=predicted peptide   gene model=Glyma15g06050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEKEKENWEMPMATFLIDHHSDQLRSISSSPDPNLHFPLFIDYAELMEDNPRIARLLFAQPKTYLPVFDDAALWAHKIVLREMPDDKKGVEKKFIHVRINISGSPLECPETFPSIGRVRVHHRGILLTLKGIVIRSGAIKMHEGERKYICQKCKNSFPVYPEVEARNSISLPSICPIQQSKPCGGTKFQYEENTIVCHDYQEIKIQESTQVLGVGAIPRSILVILKDDLVDVVKAGDDVIVTGLLTAKWSPELKDVRCDLDPVLIANNIRRINELKSEIDISDDMVKKFEQFWVHFKDSPLKGRNAILRAICPQVFGLFTVKLAVALTLIGGVQHVDASGTRVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTTVFGATNPKGQYDPDQPLSINTTLSGPLLSRFDIVLVLLDTKNPDWDAVVSSHILSEAELDRTTNDEDLVNSWPLPTLKRYIHYVKEHFRPVLTREAEIVISSYYQLQRKSATHNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILCIESSMTTSAIVDCIGNALHSNFTDNPDQEYARQERLILEKLGSIDDI*

>Glyma15g06050.3   sequence type=predicted peptide   gene model=Glyma15g06050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEKEKENWEMPMATFLIDHHSDQLRSISSSPDPNLHFPLFIDYAELMEDNPRIARLLFAQPKTYLPVFDDAALWAHKIVLREMPDDKKGVEKKFIHVRINISGSPLECPETFPSIGRVRVHHRGILLTLKGIVIRSGAIKMHEGERKYICQKCKNSFPVYPEVEARNSISLPSICPIQQSKPCGGTKFQYEENTIVCHDYQEIKIQESTQVLGVGAIPRSILVILKDDLVDVVKAGDDVIVTGLLTAKWSPELKDVRCDLDPVLIANNIRRINELKSEIDISDDMVKKFEQFWVHFKDSPLKGRNAILRAICPQVFGLFTVKLAVALTLIGGVQHVDASGTRVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTTVFGATNPKGQYDPDQPLSINTTLSGPLLSRFDIVLVLLDTKNPDWDAVVSSHILSEAELDRTTNDEDLVNSWPLPTLKRYIHYVKEHFRPVLTREAEIVISSYYQLQRKSATHNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILCIESSMTTSAIVDCIGNALHSNFTDNPDQEYARQERLILEKLGSIDDI*

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