Glyma15g05940 - SoyBase

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Report for Sequence Feature Glyma15g05940

Feature Type:	gene_model
Chromosome:	Gm15
Start:	4225804
stop:	4228831
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g05940

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G02170	AT	Annotation by Michelle Graham. TAIR10: metacaspase 1 \| chr1:411883-413426 FORWARD LENGTH=367	SoyBase	E_val: 7.00E-73	ISS
GO:0006508	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteolysis	SoyBase	N/A	ISS
GO:0006612	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane	SoyBase	N/A	ISS
GO:0009697	GO-bp	Annotation by Michelle Graham. GO Biological Process: salicylic acid biosynthetic process	SoyBase	N/A	ISS
GO:0009863	GO-bp	Annotation by Michelle Graham. GO Biological Process: salicylic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0010363	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response	SoyBase	N/A	ISS
GO:0030968	GO-bp	Annotation by Michelle Graham. GO Biological Process: endoplasmic reticulum unfolded protein response	SoyBase	N/A	ISS
GO:0031348	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response	SoyBase	N/A	ISS
GO:0043068	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of programmed cell death	SoyBase	N/A	ISS
GO:0043069	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of programmed cell death	SoyBase	N/A	ISS
GO:0045087	GO-bp	Annotation by Michelle Graham. GO Biological Process: innate immune response	SoyBase	N/A	ISS
GO:0004197	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cysteine-type endopeptidase activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
KOG1546	KOG	Metacaspase involved in regulation of apoptosis	JGI		ISS
PF00656	PFAM	Caspase domain	JGI		ISS
UniRef100_G7IPJ2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Metacaspase-1 n=1 Tax=Medicago truncatula RepID=G7IPJ2_MEDTR	SoyBase	E_val: 2.00E-140	ISS
UniRef100_I1MDX2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MDX2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g05940

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma15g05940 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g054000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g05940

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma15g05940

Limit To All Plant Sequences

>Glyma15g05940.3   sequence type=transcript   gene model=Glyma15g05940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TATATACCCTTCTGGTTGTTGCATGTTTGGCATGCAGAGAAAACTAACGTTCAAAAAATGGATAAATCTAGAACAACGAGAAAGTACGTTTATATTCCAAAAACTACACCTCAAGGCTTTGTTTCCCCAAATATTAATAGTTCAGAGCATGCTGGGGAAGCAACACCTACCTGCTTTGTTTCCCCAAAGATTGATGCTTTGAACTACTACAACTCGAGAAAGGATGTTCCTTTCCCGACAAACACTAGTACGGCTCGTTGCCTTGTTTCTTCAAAGATTAGTAGTTCAAAGCTTGCTGGGGAAGCAAAACTTACCTGCAGTGGTTGCCAACGCAAGTTTCTATTACCTAAAATCACAAATGCATACCGTTGCTATAAATGTAATAGTGTCACCAATTCAACTATAGGTTCTGAGCAATCAAGGAAAGACAGTGGAGTCTTCAAACATGATCAACTGAATAATGCTTACCCAAATGGAGCTTTGCTGCCACCTTCAGCTAGTTGTTCCTTGTCATTATCCATGACGATGGGTAACAAGCGTGCAGTTATATGTGGAGTTACATACGGGAAAAGGAAATTCAAGCTAGAAGGAACCATTAATGATGTTAATAACATGAAAAATCTACTTCTTGATAAATTTAAATTCCCAATTGGGTGCATACGTGTCCTCACAGAAGAAGAGAAGGACGCCAATTTAATTCCAACAAAGAGGAACATACTGGAATCCTTAAAGTGGCTTGTGAAGGACTGCAAGTCGGAGGACTCATTAGTGTTCTACTTCTCTGGACATGGTCTGCAACAACCTGAATATTGCAAAGGAGATGAAATTGACGGGCTTGATGAAACTATTTGTCCTGTTGATTTTGTGAGAGAAGGAATGATCACTGACAATGATATAAATTCTACCATTGTTCAACCACTCAAGAAAGGTGTCACACTTCATGCTGTCATTGATGCTTGTCATAGTGGAACAACACTTGATCTTATGTATCTTTGCAAAAAAGAAAAAGGCAGTTGGAATTGGAAGGATAGCAAACCACCCCATAGTAAAAAACCTATGACAAAAACAAATGGTGGACTTTCTATTTGCCTCAGTGCTTGTAAAGATAGTCTGATGGCTGCTGATACCGCGGTTTAACGGTATATTGACATATCTTTTCTCAAAAATAATCAGAGAACATTCTGATGAAATAACATATGTTGGTTTACTAGAAAAGATACATGAGGAAATTGGAAAGATTCACCAAAGCAATTTCTGTAACAGCTTCTTGAAACGTATTTTTCAAAGTAAAATTGACCAGGACCCTTTTTTATCATCGTCGGAGAAATTTGATATTGCTAGAAGCATATTTAAATTGTGACGATGTACGTTGGAAAGGTGATAGTGATAATGACAGTTGAATGGAGATAGTGTGTTGAAAAATCTGATAGTTAGTAAGTTTGATGATCCCTTGTAAAATTAGTTGACGTAACAGTCAACCATGTTTGAAAATTGAAACCGTTAACAAGTTGTTAAAAAATCTGGTAGATAGGGAAGGTTCAGTGCTTAGTAATATAAATAGGACTTCTACATACTTTTTAGGGCCCAAGTCAATCAACCAAACTTTTTCATTTTACTTTGCATTTATCTTTGTTGTCTTTATTATTTTATTGCCTTTTATTTTTACCCAAGTTTAATTTTTGTCTTCCCATCAGCACTAAATATTTTTTTGGAGTAGTTTAG

Coding sequences of Glyma15g05940

Limit To All Plant Sequences

>Glyma15g05940.2   sequence type=CDS   gene model=Glyma15g05940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATAAATCTAGAACAACGAGAAAGTACGTTTATATTCCAAAAACTACACCTCAAGGCTTTGTTTCCCCAAATATTAATAGTTCAGAGCATGCTGGGGAAGCAACACCTACCTGCTTTGTTTCCCCAAAGATTGATGCTTTGAACTACTACAACTCGAGAAAGGATGTTCCTTTCCCGACAAACACTAGTACGGCTCGTTGCCTTGTTTCTTCAAAGATTAGTAGTTCAAAGCTTGCTGGGGAAGCAAAACTTACCTGCAGTGGTTGCCAACGCAAGTTTCTATTACCTAAAATCACAAATGCATACCGTTGCTATAAATGTAATAGTGTCACCAATTCAACTATAGGTTCTGAGCAATCAAGGAAAGACAGTGGAGTCTTCAAACATGATCAACTGAATAATGCTTACCCAAATGGAGCTTTGCTGCCACCTTCAGCTAGTTGTTCCTTGTCATTATCCATGACGATGGGTAACAAGCGTGCAGTTATATGTGGAGTTACATACGGGAAAAGGAAATTCAAGCTAGAAGGAACCATTAATGATGTTAATAACATGAAAAATCTACTTCTTGATAAATTTAAATTCCCAATTGGGTGCATACGTGTCCTCACAGAAGAAGAGAAGGACGCCAATTTAATTCCAACAAAGAGGAACATACTGGAATCCTTAAAGTGGCTTGTGAAGGACTGCAAGTCGGAGGACTCATTAGTGTTCTACTTCTCTGGACATGGTCTGCAACAACCTGAATATTGCAAAGGAGATGAAATTGACGGGCTTGATGAAACTATTTGTCCTGTTGATTTTGTGAGAGAAGGAATGATCACTGACAATGATATAAATTCTACCATTGTTCAACCACTCAAGAAAGGTGTCACACTTCATGCTGTCATTGATGCTTGTCATAGTGGAACAACACTTGATCTTATGTATCTTTGCAAAAAAGAAAAAGGCAGTTGGAATTGGAAGGATAGCAAACCACCCCATAGTAAAAAACCTATGACAAAAACAAATGGTGGACTTTCTATTTGCCTCAGTGCTTGTAAAGATAGTCTGATGGCTGCTGATACCGCGGCTTTTGATGGAAACAGGTTTAACGGTATATTGACATATCTTTTCTCAAAAATAATCAGAGAACATTCTGATGAAATAACATATGTTGGTTTACTAGAAAAGATACATGAGGAAATTGGAAAGATTCACCAAAGCAATTTCTGTAACAGCTTCTTGAAACGTATTTTTCAAAGTAAAATTGACCAGGACCCTTTTTTATCATCGTCGGAGAAATTTGATATTGCTAGAAGCATATTTAAATTGTGA

>Glyma15g05940.3   sequence type=CDS   gene model=Glyma15g05940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATAAATCTAGAACAACGAGAAAGTACGTTTATATTCCAAAAACTACACCTCAAGGCTTTGTTTCCCCAAATATTAATAGTTCAGAGCATGCTGGGGAAGCAACACCTACCTGCTTTGTTTCCCCAAAGATTGATGCTTTGAACTACTACAACTCGAGAAAGGATGTTCCTTTCCCGACAAACACTAGTACGGCTCGTTGCCTTGTTTCTTCAAAGATTAGTAGTTCAAAGCTTGCTGGGGAAGCAAAACTTACCTGCAGTGGTTGCCAACGCAAGTTTCTATTACCTAAAATCACAAATGCATACCGTTGCTATAAATGTAATAGTGTCACCAATTCAACTATAGGTTCTGAGCAATCAAGGAAAGACAGTGGAGTCTTCAAACATGATCAACTGAATAATGCTTACCCAAATGGAGCTTTGCTGCCACCTTCAGCTAGTTGTTCCTTGTCATTATCCATGACGATGGGTAACAAGCGTGCAGTTATATGTGGAGTTACATACGGGAAAAGGAAATTCAAGCTAGAAGGAACCATTAATGATGTTAATAACATGAAAAATCTACTTCTTGATAAATTTAAATTCCCAATTGGGTGCATACGTGTCCTCACAGAAGAAGAGAAGGACGCCAATTTAATTCCAACAAAGAGGAACATACTGGAATCCTTAAAGTGGCTTGTGAAGGACTGCAAGTCGGAGGACTCATTAGTGTTCTACTTCTCTGGACATGGTCTGCAACAACCTGAATATTGCAAAGGAGATGAAATTGACGGGCTTGATGAAACTATTTGTCCTGTTGATTTTGTGAGAGAAGGAATGATCACTGACAATGATATAAATTCTACCATTGTTCAACCACTCAAGAAAGGTGTCACACTTCATGCTGTCATTGATGCTTGTCATAGTGGAACAACACTTGATCTTATGTATCTTTGCAAAAAAGAAAAAGGCAGTTGGAATTGGAAGGATAGCAAACCACCCCATAGTAAAAAACCTATGACAAAAACAAATGGTGGACTTTCTATTTGCCTCAGTGCTTGTAAAGATAGTCTGATGGCTGCTGATACCGCGGTTTAA

Predicted protein sequences of Glyma15g05940

Limit To All Plant Sequences

>Glyma15g05940.2   sequence type=predicted peptide   gene model=Glyma15g05940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDKSRTTRKYVYIPKTTPQGFVSPNINSSEHAGEATPTCFVSPKIDALNYYNSRKDVPFPTNTSTARCLVSSKISSSKLAGEAKLTCSGCQRKFLLPKITNAYRCYKCNSVTNSTIGSEQSRKDSGVFKHDQLNNAYPNGALLPPSASCSLSLSMTMGNKRAVICGVTYGKRKFKLEGTINDVNNMKNLLLDKFKFPIGCIRVLTEEEKDANLIPTKRNILESLKWLVKDCKSEDSLVFYFSGHGLQQPEYCKGDEIDGLDETICPVDFVREGMITDNDINSTIVQPLKKGVTLHAVIDACHSGTTLDLMYLCKKEKGSWNWKDSKPPHSKKPMTKTNGGLSICLSACKDSLMAADTAAFDGNRFNGILTYLFSKIIREHSDEITYVGLLEKIHEEIGKIHQSNFCNSFLKRIFQSKIDQDPFLSSSEKFDIARSIFKL*

>Glyma15g05940.3   sequence type=predicted peptide   gene model=Glyma15g05940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDKSRTTRKYVYIPKTTPQGFVSPNINSSEHAGEATPTCFVSPKIDALNYYNSRKDVPFPTNTSTARCLVSSKISSSKLAGEAKLTCSGCQRKFLLPKITNAYRCYKCNSVTNSTIGSEQSRKDSGVFKHDQLNNAYPNGALLPPSASCSLSLSMTMGNKRAVICGVTYGKRKFKLEGTINDVNNMKNLLLDKFKFPIGCIRVLTEEEKDANLIPTKRNILESLKWLVKDCKSEDSLVFYFSGHGLQQPEYCKGDEIDGLDETICPVDFVREGMITDNDINSTIVQPLKKGVTLHAVIDACHSGTTLDLMYLCKKEKGSWNWKDSKPPHSKKPMTKTNGGLSICLSACKDSLMAADTAV*

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