Report for Sequence Feature Glyma15g05930
Feature Type: gene_model
Chromosome: Gm15
Start: 4222360
stop: 4224674
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma15g05930
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G09430 AT
Annotation by Michelle Graham. TAIR10: alpha/beta-Hydrolases superfamily protein | chr5:2932162-2933362 FORWARD LENGTH=311
SoyBase E_val: 4.00E-161 ISS
GO:0005737 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm
SoyBase N/A ISS
GO:0016787 GO-mf
Annotation by Michelle Graham. GO Molecular Function: hydrolase activity
SoyBase N/A ISS
KOG1454
KOG
Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily)
JGI ISS
PTHR10992 Panther
ALPHA/BETA HYDROLASE RELATED
JGI ISS
PTHR10992:SF163 Panther
HYDROLASE, ALPHA/BETA FOLD FAMILY PROTEIN
JGI ISS
PF00561 PFAM
alpha/beta hydrolase fold
JGI ISS
UniRef100_B9SIP5 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Abhydrolase domain containing, putative n=1 Tax=Ricinus communis RepID=B9SIP5_RICCO
SoyBase E_val: 3.00E-172 ISS
UniRef100_I1MDX1 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1MDX1_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma15g05930
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma15g05930
Paralog Evidence Comments
Glyma08g19060 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma15g05930 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.15g053900 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma15g05930
Coding sequences of Glyma15g05930
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma15g05930.2 sequence type=CDS gene model=Glyma15g05930 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTTGCCCAAACTCTCAAAATGCATCAGCTTCACCGCTTCGCGGGACTGGTTGTACCGTCATTTGTTCGCCTCCGCGGGGCTCCGGTCGGTGGCCACCGACCTCGGCGAAGGAACCACCATGCATTGCTGGGTACCCAAAATGCACAAGCCATGCAAGCCAAGTCTCGTACTTGTTCACGGTTTTGGCGCCAATGCGATGTGGCAATACGGGGAACACATTCGGCACTTCATGGGGCACTTCAACGTGTACGTGCCAGACCTTGTGTTCTTCGGCGAGTCCTTCACGTCTCGACCTGAGAGGAGCGAGTCCTTTCAGGCGGAGTGCGTGGTGAAGATGATGGAGGCTCATGGGGTGCACAAAATGAGCTTGGTGGGGATCAGCTATGGTGGGTTTGTGGGGTACCGTGTGGCTGCTCACTTCCCTGAGGTGGTGGAGAAGATTGTTCTTTGTTGTGCTGGGGTTTGCTTGGAGGAGGTTGACATGGAAAATGGTTTGTTCAGGGTTTCCAATTTGGATGAGGCTTCCAGCATTTTGTTGCCACAAACACCGGACAAGCTCAGGGAATTGATGAAGTTGTCCTTTGTCAGGCCTGCCAGGGGTGTGCCTACTTGGTTCCTTCAAGATTTCATTCAAGTGATGTGTACAGACTACATTGAACAGAAGAGAGAATTGCTTGAGGCAATACTGAAAGGTCGGCATCTTTCTGATCTTCCTAAGATCCAACAGCCTACTCTAATTTTGTGGGGAGAGCAAGATCAGATATTCCCTCTGGAGTTAGGACACAGATTAAAAAGGCATATAGGGGGAAATGCTCAAATGGCAGTCATCAAGAATGCAGGGCATGCAGTGAACCTAGAAAAGGCCAAAGAGTTTGGTATGCACTTGAAAGCATTCCTTATAGATTCTAATACTACAAAGTCATGTCCCACCTCACCGTTTTCTGCTGGGGGGAATATTCATTTTTAA
Predicted protein sequences of Glyma15g05930
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma15g05930.2 sequence type=predicted peptide gene model=Glyma15g05930 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MLPKLSKCISFTASRDWLYRHLFASAGLRSVATDLGEGTTMHCWVPKMHKPCKPSLVLVHGFGANAMWQYGEHIRHFMGHFNVYVPDLVFFGESFTSRPERSESFQAECVVKMMEAHGVHKMSLVGISYGGFVGYRVAAHFPEVVEKIVLCCAGVCLEEVDMENGLFRVSNLDEASSILLPQTPDKLRELMKLSFVRPARGVPTWFLQDFIQVMCTDYIEQKRELLEAILKGRHLSDLPKIQQPTLILWGEQDQIFPLELGHRLKRHIGGNAQMAVIKNAGHAVNLEKAKEFGMHLKAFLIDSNTTKSCPTSPFSAGGNIHF*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
