Glyma15g05891 - SoyBase

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Report for Sequence Feature Glyma15g05891

Feature Type:	gene_model
Chromosome:	Gm15
Start:	4183759
stop:	4188118
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g05891

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G33520	AT	Annotation by Michelle Graham. TAIR10: P-type ATP-ase 1 \| chr4:16118993-16120542 FORWARD LENGTH=237	SoyBase	E_val: 5.00E-28	ISS
GO:0006754	GO-bp	Annotation by Michelle Graham. GO Biological Process: ATP biosynthetic process	SoyBase	N/A	ISS
GO:0006812	GO-bp	Annotation by Michelle Graham. GO Biological Process: cation transport	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0009767	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosynthetic electron transport chain	SoyBase	N/A	ISS
GO:0030001	GO-bp	Annotation by Michelle Graham. GO Biological Process: metal ion transport	SoyBase	N/A	ISS
GO:0035434	GO-bp	Annotation by Michelle Graham. GO Biological Process: copper ion transmembrane transport	SoyBase	N/A	ISS
GO:0046034	GO-bp	Annotation by Michelle Graham. GO Biological Process: ATP metabolic process	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009536	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastid	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0009941	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0005375	GO-mf	Annotation by Michelle Graham. GO Molecular Function: copper ion transmembrane transporter activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0015662	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	SoyBase	N/A	ISS
GO:0043682	GO-mf	Annotation by Michelle Graham. GO Molecular Function: copper-transporting ATPase activity	SoyBase	N/A	ISS
GO:0046872	GO-mf	Annotation by Michelle Graham. GO Molecular Function: metal ion binding	SoyBase	N/A	ISS
PTHR24093	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24093:SF150	Panther		JGI		ISS
PF00403	PFAM	Heavy-metal-associated domain	JGI		ISS
UniRef100_G7L410	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Metal-transporting P-type ATPase n=1 Tax=Medicago truncatula RepID=G7L410_MEDTR	SoyBase	E_val: 2.00E-34	ISS
UniRef100_UPI000233C010	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233C010 related cluster n=1 Tax=unknown RepID=UPI000233C010	SoyBase	E_val: 3.00E-105	ISS

Expression Patterns of Glyma15g05891

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g05891 not represented in the dataset	Glyma15g05891 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g05891

Paralog	Evidence	Comments
Glyma08g19110	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g05891 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g053500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g05891

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma15g05891

Limit To All Plant Sequences

>Glyma15g05891.2   sequence type=transcript   gene model=Glyma15g05891   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTCTAGTTTTAAAATAGTAATAATTATTGTAGCTTTTATTTCTATATATTTTAGGGATGTATATTGTATCGTAGGCGATAACAAAATAGTTAAGCAGTAATTGGTCTCCCCTGGAGTTGCTCCGTGTCCGTGCTAATAATGTCTTTTTATCTTTCAATTCCGATCGCTGTGGATTCTTCGTCGTCTTTGACGGTGACGCAGATGGCGCTTTTCAAATCTCTGGAGCAGAAGCACCACCGTCATTTCGTAAGAGGCAGAGTCAGTGTTATTAGACCACTTCATCGCCGCCTCAACTCCGTTACGCCTCTGCGGTGCTCTTCCTCCGGCGACGACGCCACCATTACTCTCCACGTTGGGGGAATGATGTGCGAGGGATGTGCAAATAGCGTCAAAAAAATTATAGAAAGCCGACCACAAGTGCTATCTGCTCATGTAAATTTGACATCCGAGACAGCAACCGTTTCCCCTGTGCCTGAACAAAAAACTGCACCAGATGGCCTAAAGCAATTGGGGGAGGAACTTGCGCAGCATTTAACTACATGTGGTTTTACTTCTACCCTTCGAGTGGCAGATCAAGAAGATAGCAGCTGAAGGAGTTCTATTTCATCATATAAATGCAAAAGAGTGGTTATCTGGAGTCCATGATGGCGAATCCACAACCACAACAAACATCAGGACAACTTCCGGATTGTCGCGCTGGAAGGACAATAAACAATTTGGAGATCCACATGGCTAGAAAGGATCGAACATTTGAGCAATCCAAAATAAGACCTTTCCACTGCTATCAAACTGTAGCTTTCAAGATAATTGCCATTTGTTTTATTTGGGCTGCAAAATTGATTTTCAGACCATGTATGTCATGCTAACTTGCATCAGATGTGAGTGTGGTACACTTAAAGTTGTGATCCCCCTTCTGCAGTTCTTTCTCAAAAAGGCATAAAAATAGTTTATAACTAACTTCTTGATAAACCACGAGTCCTTCCTTGCTCTTATATCCCCATGACCCAGAAGATACACAACACCAGATTCTTTAGCCTTGTGAATAAAATATAACTCACTCTCAAGGCTCTGCTCAGCATCAAACACCAGGGGATCAGTGGATACCGGGCTTATCACGTCTGATGTGCTTGCTTCTAAAATGGGGTTGCTTGTACCCTTAAAATCAGCAAGAAGAGGAACACCAAGTGAGTAAACGCTCCCATTGGGAGCTATGAGAACCCTAGAATTAGGGTACTCATCCTCTGAATCAGTATCATCATCCCCATCACTCTCCAGTGACCTCTCCTGAGCCTCACGACGTATAAATTTCTCTAGACTCTCAATCAGCAGCTGCTCAAAAGTCTGATGATTTTCTTTCCGAACATCTTTGTAACCATACCTGTTTGACATAAAAATTCAGACAAAAAGACATTTTCATTAAGAGGATAATAAATACATTATTCACAAAATTATCGCTTACTGAGATGCTC

>Glyma15g05891.3   sequence type=transcript   gene model=Glyma15g05891   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTCTAGTTTTAAAATAGTAATAATTATTGTAGCTTTTATTTCTATATATTTTAGGGATGTATATTGTATCGTAGGCGATAACAAAATAGTTAAGCAGTAATTGGTCTCCCCTGGAGTTGCTCCGTGTCCGTGCTAATAATGTCTTTTTATCTTTCAATTCCGATCGCTGTGGATTCTTCGTCGTCTTTGACGGTGACGCAGATGGCGCTTTTCAAATCTCTGGAGCAGAAGCACCACCGTCATTTCGTAAGAGGCAGAGTCAGTGTTATTAGACCACTTCATCGCCGCCTCAACTCCGTTACGCCTCTGCGGTGCTCTTCCTCCGGCGACGACGCCACCATTACTCTCCACGTTGGGGGAATGATGTGCGAGGGATGTGCAAATAGCGTCAAAAAAATTATAGAAAGCCGACCACAAGTGCTATCTGCTCATGTAAATTTGACATCCGAGACAGCAACCGTTTCCCCTGTGCCTGAACAAAAAACTGCACCAGATGGCCTAAAGCAATTGGGGGAGGAACTTGCGCAGCATTTAACTACATGTGGTTTTACTTCTACCCTTCGAGATCAAGAAGATAGCAGCTGAAGGAGTTCTATTTCATCATATAAATGCAAAAGAGTGGTTATCTGGAGTCCATGATGGCGAATCCACAACCACAACAAACATCAGGACAACTTCCGGATTGTCGCGCTGGAAGGACAATAAACAATTTGGAGATCCACATGGCTAGAAAGGATCGAACATTTGAGCAATCCAAAATAAGACCTTTCCACTGCTATCAAACTGTAGCTTTCAAGATAATTGCCATTTGTTTTATTTGGGCTGCAAAATTGATTTTCAGACCATGTATGTCATGCTAACTTGCATCAGATGTGAGTGTGGTACACTTAAAGTTGTGATCCCCCTTCTGCAGTTCTTTCTCAAAAAGGCATAAAAATAGTTTATAACTAACTTCTTGATAAACCACGAGTCCTTCCTTGCTCTTATATCCCCATGACCCAGAAGATACACAACACCAGATTCTTTAGCCTTGTGAATAAAATATAACTCACTCTCAAGGCTCTGCTCAGCATCAAACACCAGGGGATCAGTGGATACCGGGCTTATCACGTCTGATGTGCTTGCTTCTAAAATGGGGTTGCTTGTACCCTTAAAATCAGCAAGAAGAGGAACACCAAGTGAGTAAACGCTCCCATTGGGAGCTATGAGAACCCTAGAATTAGGGTACTCATCCTCTGAATCAGTATCATCATCCCCATCACTCTCCAGTGACCTCTCCTGAGCCTCACGACGTATAAATTTCTCTAGACTCTCAATCAGCAGCTGCTCAAAAGTCTGATGATTTTCTTTCCGAACATCTTTGTAACCATACCTGTTTGACATAAAAATTCAGACAAAAAGACATTTTCATTAAGAGGATAATAAATACATTATTCACAAAATTATCGCTTACTGAGATGCTC

>Glyma15g05891.4   sequence type=transcript   gene model=Glyma15g05891   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTCTAGTTTTAAAATAGTAATAATTATTGTAGCTTTTATTTCTATATATTTTAGGGATGTATATTGTATCGTAGGCGATAACAAAATAGTTAAGCAGTAATTGGTCTCCCCTGGAGTTGCTCCGTGTCCGTGCTAATAATGTCTTTTTATCTTTCAATTCCGATCGCTGTGGATTCTTCGTCGTCTTTGACGGTGACGCAGATGGCGCTTTTCAAATCTCTGGAGCAGAAGCACCACCGTCATTTCGTAAGAGGCAGAGTCAGTGTTATTAGACCACTTCATCGCCGCCTCAACTCCGTTACGCCTCTGCGGTGCTCTTCCTCCGGCGACGACGCCACCATTACTCTCCACGTTGGGGGAATGATGTGCGAGGGATGTGCAAATAGCGTCAAAAAAATTATAGAAAGCCGACCACAAGTGCTATCTGCTCATGTAAATTTGACATCCGAGACAGCAACCGTTTCCCCTGTGCCTGAACAAAAAACTGCACCAGATGGCCTAAAGCAATTGGGGGAGGAACTTGCGCAGCATTTAACTACATGTGGTTTTACTTCTACCCTTCGAGATCAAGAAGATAGCAGCTGAAGGAGTTCTATTTCATCATATAAATGCAAAAGAGTGGTTATCTGGAGTCCATGGTATGTCTTTTAACGGATTAAACTGTTATAAGATCTTATATACTCATAAGATCTTATTAAAAAGGAAACAAGAAATTAATATGATTTCTATTAATCAAAAGCAGTAGAATAATATTGTGAATAAATCTAATGCCTAATAATAGCATTG

Coding sequences of Glyma15g05891

Limit To All Plant Sequences

>Glyma15g05891.1   sequence type=CDS   gene model=Glyma15g05891   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTTTTTATCTTTCAATTCCGATCGCTGTGGATTCTTCGTCGTCTTTGACGGTGACGCAGATGGCGCTTTTCAAATCTCTGGAGCAGAAGCACCACCGTCATTTCGTAAGAGGCAGAGTCAGTGTTATTAGACCACTTCATCGCCGCCTCAACTCCGTTACGCCTCTGCGGTGCTCTTCCTCCGGCGACGACGCCACCATTACTCTCCACGTTGGGGGAATGATGTGCGAGGGATGTGCAAATAGCGTCAAAAAAATTATAGAAAGCCGACCACAAGTGCTATCTGCTCATGTAAATTTGACATCCGAGACAGCAACCGTTTCCCCTGTGCCTGAACAAAAAACTGCACCAGATGGCCTAAAGCAATTGGGGGAGGAACTTGCGCAGCATTTAACTACATGTGGTTTTACTTCTACCCTTCGAGTGGCAGATCAAGAAGATAGCAGCTGA

>Glyma15g05891.2   sequence type=CDS   gene model=Glyma15g05891   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTTTTTATCTTTCAATTCCGATCGCTGTGGATTCTTCGTCGTCTTTGACGGTGACGCAGATGGCGCTTTTCAAATCTCTGGAGCAGAAGCACCACCGTCATTTCGTAAGAGGCAGAGTCAGTGTTATTAGACCACTTCATCGCCGCCTCAACTCCGTTACGCCTCTGCGGTGCTCTTCCTCCGGCGACGACGCCACCATTACTCTCCACGTTGGGGGAATGATGTGCGAGGGATGTGCAAATAGCGTCAAAAAAATTATAGAAAGCCGACCACAAGTGCTATCTGCTCATGTAAATTTGACATCCGAGACAGCAACCGTTTCCCCTGTGCCTGAACAAAAAACTGCACCAGATGGCCTAAAGCAATTGGGGGAGGAACTTGCGCAGCATTTAACTACATGTGGTTTTACTTCTACCCTTCGAGTGGCAGATCAAGAAGATAGCAGCTGA

>Glyma15g05891.3   sequence type=CDS   gene model=Glyma15g05891   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTTTTTATCTTTCAATTCCGATCGCTGTGGATTCTTCGTCGTCTTTGACGGTGACGCAGATGGCGCTTTTCAAATCTCTGGAGCAGAAGCACCACCGTCATTTCGTAAGAGGCAGAGTCAGTGTTATTAGACCACTTCATCGCCGCCTCAACTCCGTTACGCCTCTGCGGTGCTCTTCCTCCGGCGACGACGCCACCATTACTCTCCACGTTGGGGGAATGATGTGCGAGGGATGTGCAAATAGCGTCAAAAAAATTATAGAAAGCCGACCACAAGTGCTATCTGCTCATGTAAATTTGACATCCGAGACAGCAACCGTTTCCCCTGTGCCTGAACAAAAAACTGCACCAGATGGCCTAAAGCAATTGGGGGAGGAACTTGCGCAGCATTTAACTACATGTGGTTTTACTTCTACCCTTCGAGATCAAGAAGATAGCAGCTGA

>Glyma15g05891.4   sequence type=CDS   gene model=Glyma15g05891   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTTTTTATCTTTCAATTCCGATCGCTGTGGATTCTTCGTCGTCTTTGACGGTGACGCAGATGGCGCTTTTCAAATCTCTGGAGCAGAAGCACCACCGTCATTTCGTAAGAGGCAGAGTCAGTGTTATTAGACCACTTCATCGCCGCCTCAACTCCGTTACGCCTCTGCGGTGCTCTTCCTCCGGCGACGACGCCACCATTACTCTCCACGTTGGGGGAATGATGTGCGAGGGATGTGCAAATAGCGTCAAAAAAATTATAGAAAGCCGACCACAAGTGCTATCTGCTCATGTAAATTTGACATCCGAGACAGCAACCGTTTCCCCTGTGCCTGAACAAAAAACTGCACCAGATGGCCTAAAGCAATTGGGGGAGGAACTTGCGCAGCATTTAACTACATGTGGTTTTACTTCTACCCTTCGAGATCAAGAAGATAGCAGCTGA

Predicted protein sequences of Glyma15g05891

Limit To All Plant Sequences

>Glyma15g05891.1   sequence type=predicted peptide   gene model=Glyma15g05891   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSFYLSIPIAVDSSSSLTVTQMALFKSLEQKHHRHFVRGRVSVIRPLHRRLNSVTPLRCSSSGDDATITLHVGGMMCEGCANSVKKIIESRPQVLSAHVNLTSETATVSPVPEQKTAPDGLKQLGEELAQHLTTCGFTSTLRVADQEDSS*

>Glyma15g05891.2   sequence type=predicted peptide   gene model=Glyma15g05891   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSFYLSIPIAVDSSSSLTVTQMALFKSLEQKHHRHFVRGRVSVIRPLHRRLNSVTPLRCSSSGDDATITLHVGGMMCEGCANSVKKIIESRPQVLSAHVNLTSETATVSPVPEQKTAPDGLKQLGEELAQHLTTCGFTSTLRVADQEDSS*

>Glyma15g05891.3   sequence type=predicted peptide   gene model=Glyma15g05891   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSFYLSIPIAVDSSSSLTVTQMALFKSLEQKHHRHFVRGRVSVIRPLHRRLNSVTPLRCSSSGDDATITLHVGGMMCEGCANSVKKIIESRPQVLSAHVNLTSETATVSPVPEQKTAPDGLKQLGEELAQHLTTCGFTSTLRDQEDSS*

>Glyma15g05891.4   sequence type=predicted peptide   gene model=Glyma15g05891   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSFYLSIPIAVDSSSSLTVTQMALFKSLEQKHHRHFVRGRVSVIRPLHRRLNSVTPLRCSSSGDDATITLHVGGMMCEGCANSVKKIIESRPQVLSAHVNLTSETATVSPVPEQKTAPDGLKQLGEELAQHLTTCGFTSTLRDQEDSS*

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