SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research



Report for Sequence Feature Glyma15g05880

Feature Type:gene_model
Chromosome:Gm15
Start:4178801
stop:4184904
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G09400AT Annotation by Michelle Graham. TAIR10: K+ uptake permease 7 | chr5:2916377-2920604 FORWARD LENGTH=858 SoyBaseE_val: 0ISS
GO:0006813GO-bp Annotation by Michelle Graham. GO Biological Process: potassium ion transport SoyBaseN/AISS
GO:0071805GO-bp Annotation by Michelle Graham. GO Biological Process: potassium ion transmembrane transport SoyBaseN/AISS
GO:0000325GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plant-type vacuole SoyBaseN/AISS
GO:0005773GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuole SoyBaseN/AISS
GO:0005774GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0015079GO-mf Annotation by Michelle Graham. GO Molecular Function: potassium ion transmembrane transporter activity SoyBaseN/AISS
PF02705PFAM K+ potassium transporter JGI ISS
UniRef100_G7INV8UniRef Annotation by Michelle Graham. Most informative UniRef hit: Potassium transporter n=1 Tax=Medicago truncatula RepID=G7INV8_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1MDW6UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MDW6_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma08g19120 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.15g053400 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma15g05880.2   sequence type=transcript   gene model=Glyma15g05880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CGAATCCTAACACTATCCCATGTTGAGATTAAAAACACCACTTTATTCGGATTGCGCCGTCTTAAAGCGTTACAGAGAATGCGACCGAAGCAACGGGACTAATCTTACGCCAGAGGCTGTGAATTATGGCTGGCAGCACTGTCCTGTCCAATCCAATCCATGGCAAAAGCTAGTTCCTGAGATTCAGCGATTTCTCTATGTGAAACCCTAACTAACGACCACGATTTTCGCATTTTGCGTTAACACATGGCCGAGGAGATCAATGGCGGAACGTCGATGGACTCCACCGAATCGCGGTGGGTTATACAGGACGACGACGAGGACGCGTCGGATTTAGAGAACTTCGATGCGGATTTGAGATTGGGGCGGCACGGTGGCGTGGTGGATTCGGAGGAGGAAGAGGATAACGCGGAACAGAGACTGATTCGCACTGGTCCTCGCATCGATTCCTTCGACGTCGAGGCCCTTGAAGTTCCCGGTGCTCATAGAAGTGACTATGAGGACATCAGTGTGGGTAAGAAAATTGTATTGGCTTTTCAGACACTTGGTGTTGTCTTTGGTGATGTTGGAACAAGTCCATTATATACCTTCAGTGTTATGTTTAGAAAGGCCCCTATTAATGGAAATGAAGACATTCTTGGAGCTTTATCACTTGTCTTGTACACTTTAATCTTGTTTCCTTTATTGAAGTATGTCCTGGTGGTTCTGTGGGCCAATGATGACGGTGAAGGTGGTACTTTTGCCTTGTACTCCTTGATCTGTCGTCATGCTAAGGTGAGTCTTCTCCCCAATCAGTTACCATCCGATGCCCGTATATCAAGCTTTAGGCTGAAGGTGCCATCCCCTGAGCTTGAAAGGTCATTAAAAATCAAGGAAAGACTTGAGAATTCTCTGGCTCTGAAGAAGACTCTACTAATATTAGTTCTTGCTGGTACTTCAATGGTGATTGCTAACGGTGTTGTTACGCCAGCAATGTCAGTTATGTCATCTGTTGGTGGTTTAAAAGTTGGGGTAGATGCAATCAAGAAAGGTTCTGAAGCCATGTTTGCAGATCTTTGCTACTTTTCTGTACGCTCAGTTCAGCTTTCATTTGTCTTTCTTGTTTTGCCGTGCCTACTATTGGGTTATTTGGGTCAAGCTGCATACCTTATGGAAAACCATGCTGATGCTGGTCAAGCCTTTTTTTCTTCTGTTCCAAGTGGTGCATTCTGGCCAACTTTCCTTATTGCTAACATTGCTGCACTTATTGCGAGTCGGGCTATGACAACAGCAACATTTTCATGTATAAAGCAATCAACTGCACTCGGTTGTTTCCCTCGTCTTAAAATCATTCATACTTCTCGGAAATTTATGGGCCAGATCTATATCCCTGTGATAAACTGGTTCCTCTTGGCTCTTTCTCTGGTGCTTGTCTGCACTATATCTAGCATTGACGAGATTGGAAATGCCTATGGCATTGCTGAGCTCGGGGTGATGATGATGACCACTATTTTAGTAACCCTTGTTATGATTCTTATATGGCAGATACACATCATCATAGTGCTGAGTTTCGTGGTACTCTTCTTGGGATTGGAATTAACTTTTTTTTCGTCTGTCCTGTGGAGTGTGACAGATGGAAGTTGGATTATACTGGTCTTTGCCATAATAATGTTTCTAATAATGTACGTATGGAATTATGGAAGCAATCTCAAGTATGAAACTGAAGTCAAGCAAAAGCTGTCAACGGATTTGATGCGAGAATTAGGTTGTAATCTTGGGACAATACGAGCTCCTGGGATTGGTTTGCTTTATAATGAGTTGGTAAAAGGAATACCGGCAATTTTTGGTCATTTTCTGACCACACTTCCTGCAATACACTCCATGATTATATTTGTGAGTATCAAGTATGTTCCAGTTCCTATGGTGCTGCAAAGTGAAAGGTTTCTTTTTCGGCGAGTCTGCCCCAAAAGCTACCATATATTTCGTTGTATCGCCAGGTATGGTTACAAAGATGTTCGGAAAGAAAATCATCAGACTTTTGAGCAGCTGCTGATTGAGAGTCTAGAGAAATTTATACGTCGTGAGGCTCAGGAGAGGTCACTGGAGAGTGATGGGGATGATGATACTGATTCAGAGGATGAGTACCCTAATTCTAGGGTTCTCATAGCTCCCAATGGGAGCGTTTACTCACTTGGTGTTCCTCTTCTTGCTGATTTTAAGGGTACAAGCAACCCCATTTTAGAAGCAAGCACATCAGACGTGATAAGCCCGGTATCCACTGATCCCCTGGTGTTTGATGCTGAGCAGAGCCTTGAGAGTGAGTTATATTTTATTCACAAGGCTAAAGAATCTGGTGTTGTGTATCTTCTGGGTCATGGGGATATAAGAGCAAGGAAGGACTCGTGGTTTATCAAGAAGTTAGTTATAAACTATTTTTATGCCTTTTTGAGAAAGAACTGCAGAAGGGGGATCACAACTTTAAGTGTACCACACTCACATCTGATGCAAGTTAGCATGACATACATGGTCTGAAAATCAATTTTGCAGCCCAAATAAAACAAATGGCAATTATCTTGAAAGCTACAGTTTGATAGCAGTGGAAAGGTCTTATTTTGGATTGCTCAAATGTTCGATCCTTTCTAGCCATGTGGATCTCCAAATTGTTTATTGTCCTTCCAGCGCGACAATCCGGAAGTTGTCCTGATGTTTGTTGTGGTTGTGGATTCGCCATCTGCATATATGGGATCGGAAAAGGCAGATAACAAAGAGAAAATGTTAAAAATTAAACATCCCTATGCATACAGTACACATTTGTGAATGTGTCAAATTCAACTTAAACGACAGAACCATGGACATCGAGTATCGTACAGTGGTATGTCATTGCCCTTAGTTTTCTTATTCTATCGCCTTAATTTGTTGTCTACCTTCCCAACTCTGACTAGACATTTTCTTGATTGAAACACAAATGAGATCATGTCTATTTTTTTATTTGAAAATTTTCATAATGTATATTTCCCTTTTTGGTCTTTAATATACTAAATTCACGAGTTGG

>Glyma15g05880.1   sequence type=CDS   gene model=Glyma15g05880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCGAGGAGATCAATGGCGGAACGTCGATGGACTCCACCGAATCGCGGTGGGTTATACAGGACGACGACGAGGACGCGTCGGATTTAGAGAACTTCGATGCGGATTTGAGATTGGGGCGGCACGGTGGCGTGGTGGATTCGGAGGAGGAAGAGGATAACGCGGAACAGAGACTGATTCGCACTGGTCCTCGCATCGATTCCTTCGACGTCGAGGCCCTTGAAGTTCCCGGTGCTCATAGAAGTGACTATGAGGACATCAGTGTGGGTAAGAAAATTGTATTGGCTTTTCAGACACTTGGTGTTGTCTTTGGTGATGTTGGAACAAGTCCATTATATACCTTCAGTGTTATGTTTAGAAAGGCCCCTATTAATGGAAATGAAGACATTCTTGGAGCTTTATCACTTGTCTTGTACACTTTAATCTTGTTTCCTTTATTGAAGTATGTCCTGGTGGTTCTGTGGGCCAATGATGACGGTGAAGGTGGTACTTTTGCCTTGTACTCCTTGATCTGTCGTCATGCTAAGGTGAGTCTTCTCCCCAATCAGTTACCATCCGATGCCCGTATATCAAGCTTTAGGCTGAAGGTGCCATCCCCTGAGCTTGAAAGGTCATTAAAAATCAAGGAAAGACTTGAGAATTCTCTGGCTCTGAAGAAGACTCTACTAATATTAGTTCTTGCTGGTACTTCAATGGTGATTGCTAACGGTGTTGTTACGCCAGCAATGTCAGTTATGTCATCTGTTGGTGGTTTAAAAGTTGGGGTAGATGCAATCAAGAAAGATGAAGTGGTGATGATTTCGGTTGCCTGTCTTATCATTTTGTTCAGTGTACAAAAGTATGGAACTAGTAAAATGGGACTTGCTGTAGGACCTGCTTTGTTCTTATGGTTTTGTTCTCTTGCGGGCATCGGGATATATAATCTTGTCAAATATGACAATAGTGTCTTGAGGGCATTTAATCCGATTCACATCTACTATTTCTTCAAGAGGAACTCAACTAATGCATGGTATTCTCTAGGGGGTTGCCTTCTGAGTGCAACTGGTTCTGAAGCCATGTTTGCAGATCTTTGCTACTTTTCTGTACGCTCAGTTCAGCTTTCATTTGTCTTTCTTGTTTTGCCGTGCCTACTATTGGGTTATTTGGGTCAAGCTGCATACCTTATGGAAAACCATGCTGATGCTGGTCAAGCCTTTTTTTCTTCTGTTCCAAGTGGTGCATTCTGGCCAACTTTCCTTATTGCTAACATTGCTGCACTTATTGCGAGTCGGGCTATGACAACAGCAACATTTTCATGTATAAAGCAATCAACTGCACTCGGTTGTTTCCCTCGTCTTAAAATCATTCATACTTCTCGGAAATTTATGGGCCAGATCTATATCCCTGTGATAAACTGGTTCCTCTTGGCTCTTTCTCTGGTGCTTGTCTGCACTATATCTAGCATTGACGAGATTGGAAATGCCTATGGCATTGCTGAGCTCGGGGTGATGATGATGACCACTATTTTAGTAACCCTTGTTATGATTCTTATATGGCAGATACACATCATCATAGTGCTGAGTTTCGTGGTACTCTTCTTGGGATTGGAATTAACTTTTTTTTCGTCTGTCCTGTGGAGTGTGACAGATGGAAGTTGGATTATACTGGTCTTTGCCATAATAATGTTTCTAATAATGTACGTATGGAATTATGGAAGCAATCTCAAGTATGAAACTGAAGTCAAGCAAAAGCTGTCAACGGATTTGATGCGAGAATTAGGTTGTAATCTTGGGACAATACGAGCTCCTGGGATTGGTTTGCTTTATAATGAGTTGGTAAAAGGAATACCGGCAATTTTTGGTCATTTTCTGACCACACTTCCTGCAATACACTCCATGATTATATTTGTGAGTATCAAGTATGTTCCAGTTCCTATGGTGCTGCAAAGTGAAAGGTTTCTTTTTCGGCGAGTCTGCCCCAAAAGCTACCATATATTTCGTTGTATCGCCAGGTATGGTTACAAAGATGTTCGGAAAGAAAATCATCAGACTTTTGAGCAGCTGCTGATTGAGAGTCTAGAGAAATTTATACGTCGTGAGGCTCAGGAGAGGTCACTGGAGAGTGATGGGGATGATGATACTGATTCAGAGGATGAGTACCCTAATTCTAGGGTTCTCATAGCTCCCAATGGGAGCGTTTACTCACTTGGTGTTCCTCTTCTTGCTGATTTTAAGGGTACAAGCAACCCCATTTTAGAAGCAAGCACATCAGACGTGATAAGCCCGGTATCCACTGATCCCCTGGTGTTTGATGCTGAGCAGAGCCTTGAGAGTGAGTTATATTTTATTCACAAGGCTAAAGAATCTGGTGTTGTGTATCTTCTGGGTCATGGGGATATAAGAGCAAGGAAGGACTCGTGGTTTATCAAGAAGTTAGTTATAAACTATTTTTATGCCTTTTTGAGAAAGAACTGCAGAAGGGGGATCACAACTTTAAGTGTACCACACTCACATCTGATGCAAGTTAGCATGACATACATGGTCTGA

>Glyma15g05880.2   sequence type=CDS   gene model=Glyma15g05880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCGAGGAGATCAATGGCGGAACGTCGATGGACTCCACCGAATCGCGGTGGGTTATACAGGACGACGACGAGGACGCGTCGGATTTAGAGAACTTCGATGCGGATTTGAGATTGGGGCGGCACGGTGGCGTGGTGGATTCGGAGGAGGAAGAGGATAACGCGGAACAGAGACTGATTCGCACTGGTCCTCGCATCGATTCCTTCGACGTCGAGGCCCTTGAAGTTCCCGGTGCTCATAGAAGTGACTATGAGGACATCAGTGTGGGTAAGAAAATTGTATTGGCTTTTCAGACACTTGGTGTTGTCTTTGGTGATGTTGGAACAAGTCCATTATATACCTTCAGTGTTATGTTTAGAAAGGCCCCTATTAATGGAAATGAAGACATTCTTGGAGCTTTATCACTTGTCTTGTACACTTTAATCTTGTTTCCTTTATTGAAGTATGTCCTGGTGGTTCTGTGGGCCAATGATGACGGTGAAGGTGGTACTTTTGCCTTGTACTCCTTGATCTGTCGTCATGCTAAGGTGAGTCTTCTCCCCAATCAGTTACCATCCGATGCCCGTATATCAAGCTTTAGGCTGAAGGTGCCATCCCCTGAGCTTGAAAGGTCATTAAAAATCAAGGAAAGACTTGAGAATTCTCTGGCTCTGAAGAAGACTCTACTAATATTAGTTCTTGCTGGTACTTCAATGGTGATTGCTAACGGTGTTGTTACGCCAGCAATGTCAGTTATGTCATCTGTTGGTGGTTTAAAAGTTGGGGTAGATGCAATCAAGAAAGGTTCTGAAGCCATGTTTGCAGATCTTTGCTACTTTTCTGTACGCTCAGTTCAGCTTTCATTTGTCTTTCTTGTTTTGCCGTGCCTACTATTGGGTTATTTGGGTCAAGCTGCATACCTTATGGAAAACCATGCTGATGCTGGTCAAGCCTTTTTTTCTTCTGTTCCAAGTGGTGCATTCTGGCCAACTTTCCTTATTGCTAACATTGCTGCACTTATTGCGAGTCGGGCTATGACAACAGCAACATTTTCATGTATAAAGCAATCAACTGCACTCGGTTGTTTCCCTCGTCTTAAAATCATTCATACTTCTCGGAAATTTATGGGCCAGATCTATATCCCTGTGATAAACTGGTTCCTCTTGGCTCTTTCTCTGGTGCTTGTCTGCACTATATCTAGCATTGACGAGATTGGAAATGCCTATGGCATTGCTGAGCTCGGGGTGATGATGATGACCACTATTTTAGTAACCCTTGTTATGATTCTTATATGGCAGATACACATCATCATAGTGCTGAGTTTCGTGGTACTCTTCTTGGGATTGGAATTAACTTTTTTTTCGTCTGTCCTGTGGAGTGTGACAGATGGAAGTTGGATTATACTGGTCTTTGCCATAATAATGTTTCTAATAATGTACGTATGGAATTATGGAAGCAATCTCAAGTATGAAACTGAAGTCAAGCAAAAGCTGTCAACGGATTTGATGCGAGAATTAGGTTGTAATCTTGGGACAATACGAGCTCCTGGGATTGGTTTGCTTTATAATGAGTTGGTAAAAGGAATACCGGCAATTTTTGGTCATTTTCTGACCACACTTCCTGCAATACACTCCATGATTATATTTGTGAGTATCAAGTATGTTCCAGTTCCTATGGTGCTGCAAAGTGAAAGGTTTCTTTTTCGGCGAGTCTGCCCCAAAAGCTACCATATATTTCGTTGTATCGCCAGGTATGGTTACAAAGATGTTCGGAAAGAAAATCATCAGACTTTTGAGCAGCTGCTGATTGAGAGTCTAGAGAAATTTATACGTCGTGAGGCTCAGGAGAGGTCACTGGAGAGTGATGGGGATGATGATACTGATTCAGAGGATGAGTACCCTAATTCTAGGGTTCTCATAGCTCCCAATGGGAGCGTTTACTCACTTGGTGTTCCTCTTCTTGCTGATTTTAAGGGTACAAGCAACCCCATTTTAGAAGCAAGCACATCAGACGTGATAAGCCCGGTATCCACTGATCCCCTGGTGTTTGATGCTGAGCAGAGCCTTGAGAGTGAGTTATATTTTATTCACAAGGCTAAAGAATCTGGTGTTGTGTATCTTCTGGGTCATGGGGATATAAGAGCAAGGAAGGACTCGTGGTTTATCAAGAAGTTAGTTATAAACTATTTTTATGCCTTTTTGAGAAAGAACTGCAGAAGGGGGATCACAACTTTAAGTGTACCACACTCACATCTGATGCAAGTTAGCATGACATACATGGTCTGA

>Glyma15g05880.1   sequence type=predicted peptide   gene model=Glyma15g05880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAEEINGGTSMDSTESRWVIQDDDEDASDLENFDADLRLGRHGGVVDSEEEEDNAEQRLIRTGPRIDSFDVEALEVPGAHRSDYEDISVGKKIVLAFQTLGVVFGDVGTSPLYTFSVMFRKAPINGNEDILGALSLVLYTLILFPLLKYVLVVLWANDDGEGGTFALYSLICRHAKVSLLPNQLPSDARISSFRLKVPSPELERSLKIKERLENSLALKKTLLILVLAGTSMVIANGVVTPAMSVMSSVGGLKVGVDAIKKDEVVMISVACLIILFSVQKYGTSKMGLAVGPALFLWFCSLAGIGIYNLVKYDNSVLRAFNPIHIYYFFKRNSTNAWYSLGGCLLSATGSEAMFADLCYFSVRSVQLSFVFLVLPCLLLGYLGQAAYLMENHADAGQAFFSSVPSGAFWPTFLIANIAALIASRAMTTATFSCIKQSTALGCFPRLKIIHTSRKFMGQIYIPVINWFLLALSLVLVCTISSIDEIGNAYGIAELGVMMMTTILVTLVMILIWQIHIIIVLSFVVLFLGLELTFFSSVLWSVTDGSWIILVFAIIMFLIMYVWNYGSNLKYETEVKQKLSTDLMRELGCNLGTIRAPGIGLLYNELVKGIPAIFGHFLTTLPAIHSMIIFVSIKYVPVPMVLQSERFLFRRVCPKSYHIFRCIARYGYKDVRKENHQTFEQLLIESLEKFIRREAQERSLESDGDDDTDSEDEYPNSRVLIAPNGSVYSLGVPLLADFKGTSNPILEASTSDVISPVSTDPLVFDAEQSLESELYFIHKAKESGVVYLLGHGDIRARKDSWFIKKLVINYFYAFLRKNCRRGITTLSVPHSHLMQVSMTYMV*

>Glyma15g05880.2   sequence type=predicted peptide   gene model=Glyma15g05880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAEEINGGTSMDSTESRWVIQDDDEDASDLENFDADLRLGRHGGVVDSEEEEDNAEQRLIRTGPRIDSFDVEALEVPGAHRSDYEDISVGKKIVLAFQTLGVVFGDVGTSPLYTFSVMFRKAPINGNEDILGALSLVLYTLILFPLLKYVLVVLWANDDGEGGTFALYSLICRHAKVSLLPNQLPSDARISSFRLKVPSPELERSLKIKERLENSLALKKTLLILVLAGTSMVIANGVVTPAMSVMSSVGGLKVGVDAIKKGSEAMFADLCYFSVRSVQLSFVFLVLPCLLLGYLGQAAYLMENHADAGQAFFSSVPSGAFWPTFLIANIAALIASRAMTTATFSCIKQSTALGCFPRLKIIHTSRKFMGQIYIPVINWFLLALSLVLVCTISSIDEIGNAYGIAELGVMMMTTILVTLVMILIWQIHIIIVLSFVVLFLGLELTFFSSVLWSVTDGSWIILVFAIIMFLIMYVWNYGSNLKYETEVKQKLSTDLMRELGCNLGTIRAPGIGLLYNELVKGIPAIFGHFLTTLPAIHSMIIFVSIKYVPVPMVLQSERFLFRRVCPKSYHIFRCIARYGYKDVRKENHQTFEQLLIESLEKFIRREAQERSLESDGDDDTDSEDEYPNSRVLIAPNGSVYSLGVPLLADFKGTSNPILEASTSDVISPVSTDPLVFDAEQSLESELYFIHKAKESGVVYLLGHGDIRARKDSWFIKKLVINYFYAFLRKNCRRGITTLSVPHSHLMQVSMTYMV*







Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo