Glyma15g05800 - SoyBase

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Report for Sequence Feature Glyma15g05800

Feature Type:	gene_model
Chromosome:	Gm15
Start:	4116241
stop:	4121043
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g05800

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G10160	AT	Annotation by Michelle Graham. TAIR10: Thioesterase superfamily protein \| chr5:3185819-3187159 FORWARD LENGTH=219	SoyBase	E_val: 3.00E-107	ISS
GO:0006633	GO-bp	Annotation by Michelle Graham. GO Biological Process: fatty acid biosynthetic process	SoyBase	N/A	ISS
GO:0006744	GO-bp	Annotation by Michelle Graham. GO Biological Process: ubiquinone biosynthetic process	SoyBase	N/A	ISS
GO:0005618	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell wall	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009534	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid	SoyBase	N/A	ISS
GO:0009941	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0016836	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydro-lyase activity	SoyBase	N/A	ISS
GO:0019171	GO-mf	Annotation by Michelle Graham. GO Molecular Function: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity	SoyBase	N/A	ISS
PF07977	PFAM	FabA-like domain	JGI		ISS
UniRef100_E6Y9A5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Beta-hydroxyacyl-ACP dehydratase n=1 Tax=Arachis hypogaea RepID=E6Y9A5_ARAHY	SoyBase	E_val: 7.00E-118	ISS
UniRef100_I1MDV8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MDV8_SOYBN	SoyBase	E_val: 1.00E-161	ISS

Expression Patterns of Glyma15g05800

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g05800 not represented in the dataset	Glyma15g05800 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma15g05800 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g052500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g05800

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma15g05800

Limit To All Plant Sequences

>Glyma15g05800.2   sequence type=transcript   gene model=Glyma15g05800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGCAGCAATTTTACTAGGGGTGTTAGCAATGCCCGACACCCAGTGAGTGTTGTACTTTTTATGGTCCAACAACCCAACAGTGAACCTTGCTTGAACAAACAACAACAACTTGGGAGGCTCCGCCCTAACTGAAACTCAAAACGTAGCATTCCTTTCGAACTTGCACTTTGCAGCCTTTTTAACTTCAACTTCATTGTTTCTGTCGCCTTGCTTTGCTTTTAACGTTAACCTGCAATTGCATAAACTTTCAATAACTCAGTGCTCACACTTCAATTACAAGCTTTGGTTTTTCACTTCACGCTTGAAACCCAATGGCAGCCTCAGCTTTCTCCAACACATTGGTTTCTCCCATTTCTCTTTCATCCAAAGCCAAAGCCAAAGCCATTTCATTGCAACCCAAATTTCCACTTGTCAAATTCCCCAACCCCAGATCCCATCCCTTGTCGAGGAAAACGACGTCGCTCACCACGTTTTGTTCCTCCGATGCTGCCAATGCTCCTCAACATGACACCCCAATTGAATTAAGGTATCCCGCATTCCCAACCGTCATGGACATCAACCAGATTCGTGACATTTTGCCCCACAGGTTTCCTTTTCTTCTGGTGGATAGAGTGATTGAATACAATCCTGGAGTTTCTGCAGTGGCCATAAAGAATGTGACAATAAATGACAACTTCTTTCCTGGACATTTTCCAGAAAGGCCAATCATGCCTGGTGTTCTAATGGTCGAGGAAATGGTGGACGACGCCAAGGTGGAGGGCGTATCTATAGGTGGTGGAGGAGCCACTTCGTGAGGCAGAGATAGGGGGGTGTGAGATTTGGAGAAATGGGAGTGGACAAGGGTTGGTGGGTACAAGAGGGGAATGGTGGTGGTACGTGGTGAAGGGGCTGTCAGAGGAGGTAGAGGAGCCTTCAAAGATGGAGGGTAAAGTTTTTATGTGGAGGGTGTTTAATAAGATTGTGTACCTATAATTTAATCTAACTGCTCTTAATAATGGTGGTCCACCTTAGAATCTATCTAATATCTTATCATAAATTAAAAATGCACTAAAACAATGAATTAGTCTATCATAGGATAATAAAAAAGGGCTTGAATTAGAGGACAAATATTTTTAGTCACATGGATTGTGGATAGGCATTTATGTAAGACAGTGACACATTCTCATATTAATGACTTTGTTTGGACACTCATTTTAAGCATTGAAATTAATTTTGACTCCTGCAAAAAGAGAGTGGAACTGTGAGAGAGAGACATTTTCAGGACTTTGAAAAAGTTTTTAGAAGTATGCTAACAAGCTACACCTTTGGGTTTGGGAATATTTTAACAAGTTTAAGTTTTAGCTTGCTAGAACTACCTTAAAAATAAATATTAGTATATTCTTTAGAAGGAGTATTTTTTCAAAGCTACACCACCTTTGGGAGTATTTGATAAGCACCCAAGTACTTGGGAAACTCACCCTTAAAAGCTAGTTGTTATGGGGAGAGAATCAATTACTTAAATACTCCACCTAGTATCCCATATTACTTGGTGTGGTGCTTACGCACCTCATAATACCCAAGTCCCTATCAGTATTTTAACAATGCTATGGTATAGCTTGCTAAGACATTCCTTCTAAAAAAACAAGAGTATATTAACAAATCCTATATATGAGTGTATTGGAAATATACAAGGTTGTAGGTCTTGGCATCTACTTGAGTTCCCATACTTTTGAAGGTCTGTGTTTAATAAAATGAATGACATATACTAATTAATTAATTTTCAAATTAAGTTTCTTGAATCCAATGTAAAATTTGAAGATTGAAATTTG

Coding sequences of Glyma15g05800

Limit To All Plant Sequences

>Glyma15g05800.1   sequence type=CDS   gene model=Glyma15g05800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGCCTCAGCTTTCTCCAACACATTGGTTTCTCCCATTTCTCTTTCATCCAAAGCCAAAGCCAAAGCCATTTCATTGCAACCCAAATTTCCACTTGTCAAATTCCCCAACCCCAGATCCCATCCCTTGTCGAGGAAAACGACGTCGCTCACCACGTTTTGTTCCTCCGATGCTGCCAATGCTCCTCAACATGACACCCCAATTGAATTAAGGTATCCCGCATTCCCAACCGTCATGGACATCAACCAGATTCGTGACATTTTGCCCCACAGGTTTCCTTTTCTTCTGGTGGATAGAGTGATTGAATACAATCCTGGAGTTTCTGCAGTGGCCATAAAGAATGTGACAATAAATGACAACTTCTTTCCTGGACATTTTCCAGAAAGGCCAATCATGCCTGGTGTTCTAATGGTCGAGGCAATGGCACAAGTTGGTGGTTTGGTCATGTTGCAACCTGAAGTGGGAGGTTCTCGTGAAAACTTCTTCTTTGCTGGAATAGACAAAGTGCGGTTTCGTAAGCCTGTGATAGCTGGGGACACCTTAGTTATGAGAATGACACTTACTAAGCTGCAAAAGCGATTTGGAATAGCAAAGATGGAAGGGAAGGCATATGTTGGAGGTGAAGTTGTGTGTGAGGGTGAATTTTTGATGGCAATGGGGAGTGAATAA

>Glyma15g05800.2   sequence type=CDS   gene model=Glyma15g05800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGCCTCAGCTTTCTCCAACACATTGGTTTCTCCCATTTCTCTTTCATCCAAAGCCAAAGCCAAAGCCATTTCATTGCAACCCAAATTTCCACTTGTCAAATTCCCCAACCCCAGATCCCATCCCTTGTCGAGGAAAACGACGTCGCTCACCACGTTTTGTTCCTCCGATGCTGCCAATGCTCCTCAACATGACACCCCAATTGAATTAAGGTATCCCGCATTCCCAACCGTCATGGACATCAACCAGATTCGTGACATTTTGCCCCACAGGTTTCCTTTTCTTCTGGTGGATAGAGTGATTGAATACAATCCTGGAGTTTCTGCAGTGGCCATAAAGAATGTGACAATAAATGACAACTTCTTTCCTGGACATTTTCCAGAAAGGCCAATCATGCCTGGTGTTCTAATGGTCGAGGAAATGGTGGACGACGCCAAGGTGGAGGGCGTATCTATAGGTGGTGGAGGAGCCACTTCGTGA

Predicted protein sequences of Glyma15g05800

Limit To All Plant Sequences

>Glyma15g05800.1   sequence type=predicted peptide   gene model=Glyma15g05800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAASAFSNTLVSPISLSSKAKAKAISLQPKFPLVKFPNPRSHPLSRKTTSLTTFCSSDAANAPQHDTPIELRYPAFPTVMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGIDKVRFRKPVIAGDTLVMRMTLTKLQKRFGIAKMEGKAYVGGEVVCEGEFLMAMGSE*

>Glyma15g05800.2   sequence type=predicted peptide   gene model=Glyma15g05800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAASAFSNTLVSPISLSSKAKAKAISLQPKFPLVKFPNPRSHPLSRKTTSLTTFCSSDAANAPQHDTPIELRYPAFPTVMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEEMVDDAKVEGVSIGGGGATS*

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