Glyma15g05790 - SoyBase

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Report for Sequence Feature Glyma15g05790

Feature Type:	gene_model
Chromosome:	Gm15
Start:	4113931
stop:	4116181
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g05790

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G15820	AT	Annotation by Michelle Graham. TAIR10: light harvesting complex photosystem II subunit 6 \| chr1:5446685-5447676 REVERSE LENGTH=258	SoyBase	E_val: 1.00E-149	ISS
GO:0006816	GO-bp	Annotation by Michelle Graham. GO Biological Process: calcium ion transport	SoyBase	N/A	ISS
GO:0007030	GO-bp	Annotation by Michelle Graham. GO Biological Process: Golgi organization	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0009765	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosynthesis, light harvesting	SoyBase	N/A	ISS
GO:0010196	GO-bp	Annotation by Michelle Graham. GO Biological Process: nonphotochemical quenching	SoyBase	N/A	ISS
GO:0015979	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosynthesis	SoyBase	N/A	ISS
GO:0019344	GO-bp	Annotation by Michelle Graham. GO Biological Process: cysteine biosynthetic process	SoyBase	N/A	ISS
GO:0019684	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosynthesis, light reaction	SoyBase	N/A	ISS
GO:0035304	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of protein dephosphorylation	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009534	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid	SoyBase	N/A	ISS
GO:0009535	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane	SoyBase	N/A	ISS
GO:0009579	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: thylakoid	SoyBase	N/A	ISS
GO:0009783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: photosystem II antenna complex	SoyBase	N/A	ISS
GO:0009941	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope	SoyBase	N/A	ISS
GO:0010287	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastoglobule	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0016168	GO-mf	Annotation by Michelle Graham. GO Molecular Function: chlorophyll binding	SoyBase	N/A	ISS
PTHR21649	Panther	CHLOROPHYLL A/B BINDING PROTEIN	JGI		ISS
PF00504	PFAM	Chlorophyll A-B binding protein	JGI		ISS
UniRef100_I1MDV7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MDV7_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9XQB6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Chlorophyll a/b-binding protein CP24 n=1 Tax=Vigna radiata var. radiata RepID=Q9XQB6_VIGRR	SoyBase	E_val: 1.00E-175	ISS

Expression Patterns of Glyma15g05790

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g05790 not represented in the dataset	Glyma15g05790 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g05790

Paralog	Evidence	Comments
Glyma08g19210	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g05790 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g052400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g05790

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma15g05790

Limit To All Plant Sequences

>Glyma15g05790.3   sequence type=transcript   gene model=Glyma15g05790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTTTGGTTGGGTTATTTCGAAAAAGTTAGATATTGCCCGTGGCATTTGAAAAAACGAAGATACCATGCAGTATTTTGTGAGGTGAAGAAGCTCGTCTAGCTTCATTAATTAAAATGGTTTTGTTGGGATGCTTCTCCTCTTGCAAATTATCTTCCTAAGGAACTAAACATGGACAACAGGAAAAGATAGAATCAAAGAACAACGTAAGTAAGTGGAGTGGAATCGGTGGTTGAGTTGTCCACGTGGCAGGAAGCAACATGGGATGAGGATGGACATCTAGTTCCTATTGGTCCGAAATCTATCCACGATAGCTTCAGATTTCTTCTACAGATTTCATTGTCCTACTTGGCCTTCTGTGAGAGTTCCTTAGATTTTGTCCCACTTCACTTCACATCCACTCACACATAAAATCTCTCCCAAGTGGTGCATTTGCAAAGTGAACCTCAAAATCAGCCTCTAATATTTTTCTCACTGTCTCTCCAGAGAACTTGATAGAGAGATGGCAGCTGCAACATCTGGTGCTGTGTTAAATGGGTTGGGATCTTCCTTCTTGAGTGGAGGAAACAGGAGCCAAACCCTTCTGGCCACTGCTATTGGAGGCAAAGTTGGTGCTGCTGTTACTGTTAATCCCAGAAGACTCATTGTGGTAGCTGCTGCTGCACCAAAGAAGTCATGGCTCCCTGGTGTTAGAGGTGGTGGCAATCTCGTCGACCCAGAATGGCTTGATGGATCGCTACCAGGTGACTATGGTTTTGATCCACTAGGCCTTGGGAAGGACCCAGCATTCCTCAAATGGTACAGAGAAGCTGAGCTCATTCATGGGAGGTGGGCAATGGCTGCAGTTCTAGGAATCTTTGTGGGGCAGGCATGGAGTGGAGTGCCATGGTTTGAGGCTGGAGCTGACCCAAATGCAATTGCTCCTTTCTCCTTTGGTACTCTTCTGGGAACCCAGTTGATCCTCATGGGGTGGGTTGAGAGCAAGAGATGGGTGGATTTCTTCAACCCAGACTCACAGTCAGTGGAATGGGCCACTCCATGGTCAAGAACAGCTGAGAACTTTGCCAATGCCACTGGTGAGCAAGGCTACCCAGGAGGCAAATTCTTTGACCCTTTGAGCTTTGCTGGCACTATCAAGGATGGAGTTTACATTCCGGATACAGAGAAGCTGGAAAGATTGAAATTGGCTGAGATTAAGCATGCCAGGATTGCTATGTTGGCCATGCTGATTTTCTACTTTGAGGCTGGACAAGGGAAGACCCCCCTTGGTGCTCTTGGCTTGTAAATTAAACATTTCATGTAGATAATTGAATTGAGAGGCTAGACAGTTGCAAATCAACCTTTGTTTGTCCCGTCTGTGTTACTTCATGACAAATTCAAATTCTATGATCTAAAATTGGATGCATTCACTTTATGTCTGCACTCTAATGTAACCATCGTATCAATACTTGTATTTTTACTTTTCTCTTCCAAACCAGGAGTAGTTGAAGTCATCTGGGAGACTTGAAAAATATTACTATATGTGTGCCAATTCCAGTAGAGTTTTAAGAATCTGTCATACTTAATAGGGTAAAAAAATGTCCACAAGGATTGGATTGCCAT

Coding sequences of Glyma15g05790

Limit To All Plant Sequences

>Glyma15g05790.2   sequence type=CDS   gene model=Glyma15g05790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGCTGCAACATCTGGTGCTGTGTTAAATGGGTTGGGATCTTCCTTCTTGAGTGGAGGAAACAGGAGCCAAACCCTTCTGGCCACTGCTATTGGAGGCAAAGTTGGTGCTGCTGTTACTGTTAATCCCAGAAGACTCATTGTGGTAGCTGCTGCTGCACCAAAGAAGTCATGGCTCCCTGGTGTTAGAGGTGGTGGCAATCTCGTCGACCCAGAATGGCTTGATGGATCGCTACCAGGTGACTATGGTTTTGATCCACTAGGCCTTGGGAAGGACCCAGCATTCCTCAAATGGTACAGAGAAGCTGAGCTCATTCATGGGAGGTGGGCAATGGCTGCAGTTCTAGGAATCTTTGTGGGGCAGGCATGGAGTGGAGTGCCATGGTTTGAGGCTGGAGCTGACCCAAATGCAATTGCTCCTTTCTCCTTTGGTACTCTTCTGGGAACCCAGTTGATCCTCATGGGGTGGGTTGAGAGCAAGAGATGGGTGGATTTCTTCAACCCAGACTCACAGTCAGTGGAATGGGCCACTCCATGGTCAAGAACAGCTGAGAACTTTGCCAATGCCACTGGTGAGCAAGGCTACCCAGGAGGCAAATTCTTTGACCCTTTGAGCTTTGCTGGCACTATCAAGGATGGAGTTTACATTCCGGATACAGAGAAGCTGGAAAGATTGAAATTGGCTGAGATTAAGCATGCCAGGATTGCTATGTTGGCCATGCTGATTTTCTACTTTGAGGCTGGACAAGGGAAGACCCCCCTTGGTGCTCTTGGCTTGTAA

>Glyma15g05790.3   sequence type=CDS   gene model=Glyma15g05790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGCTGCAACATCTGGTGCTGTGTTAAATGGGTTGGGATCTTCCTTCTTGAGTGGAGGAAACAGGAGCCAAACCCTTCTGGCCACTGCTATTGGAGGCAAAGTTGGTGCTGCTGTTACTGTTAATCCCAGAAGACTCATTGTGGTAGCTGCTGCTGCACCAAAGAAGTCATGGCTCCCTGGTGTTAGAGGTGGTGGCAATCTCGTCGACCCAGAATGGCTTGATGGATCGCTACCAGGTGACTATGGTTTTGATCCACTAGGCCTTGGGAAGGACCCAGCATTCCTCAAATGGTACAGAGAAGCTGAGCTCATTCATGGGAGGTGGGCAATGGCTGCAGTTCTAGGAATCTTTGTGGGGCAGGCATGGAGTGGAGTGCCATGGTTTGAGGCTGGAGCTGACCCAAATGCAATTGCTCCTTTCTCCTTTGGTACTCTTCTGGGAACCCAGTTGATCCTCATGGGGTGGGTTGAGAGCAAGAGATGGGTGGATTTCTTCAACCCAGACTCACAGTCAGTGGAATGGGCCACTCCATGGTCAAGAACAGCTGAGAACTTTGCCAATGCCACTGGTGAGCAAGGCTACCCAGGAGGCAAATTCTTTGACCCTTTGAGCTTTGCTGGCACTATCAAGGATGGAGTTTACATTCCGGATACAGAGAAGCTGGAAAGATTGAAATTGGCTGAGATTAAGCATGCCAGGATTGCTATGTTGGCCATGCTGATTTTCTACTTTGAGGCTGGACAAGGGAAGACCCCCCTTGGTGCTCTTGGCTTGTAA

Predicted protein sequences of Glyma15g05790

Limit To All Plant Sequences

>Glyma15g05790.2   sequence type=predicted peptide   gene model=Glyma15g05790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAAATSGAVLNGLGSSFLSGGNRSQTLLATAIGGKVGAAVTVNPRRLIVVAAAAPKKSWLPGVRGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGVPWFEAGADPNAIAPFSFGTLLGTQLILMGWVESKRWVDFFNPDSQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLSFAGTIKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFYFEAGQGKTPLGALGL*

>Glyma15g05790.3   sequence type=predicted peptide   gene model=Glyma15g05790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAAATSGAVLNGLGSSFLSGGNRSQTLLATAIGGKVGAAVTVNPRRLIVVAAAAPKKSWLPGVRGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGVPWFEAGADPNAIAPFSFGTLLGTQLILMGWVESKRWVDFFNPDSQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLSFAGTIKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFYFEAGQGKTPLGALGL*

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