SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G28660 | AT | Annotation by Michelle Graham. TAIR10: Chloroplast-targeted copper chaperone protein | chr2:12295419-12296944 FORWARD LENGTH=265 | SoyBase | E_val: 1.00E-25 | ISS |
| GO:0006612 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane | SoyBase | N/A | ISS |
| GO:0006825 | GO-bp | Annotation by Michelle Graham. GO Biological Process: copper ion transport | SoyBase | N/A | ISS |
| GO:0009963 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of flavonoid biosynthetic process | SoyBase | N/A | ISS |
| GO:0010363 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response | SoyBase | N/A | ISS |
| GO:0030001 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metal ion transport | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005507 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: copper ion binding | SoyBase | N/A | ISS |
| GO:0046872 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: metal ion binding | SoyBase | N/A | ISS |
| KOG1603 | KOG | Copper chaperone | JGI | ISS | |
| PTHR22814 | Panther | COPPER TRANSPORT PROTEIN ATOX1-RELATED | JGI | ISS | |
| PTHR22814:SF50 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00403 | PFAM | Heavy-metal-associated domain | JGI | ISS | |
| UniRef100_Q94CS5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Heavy-metal-associated domain-containing protein-like n=1 Tax=Oryza sativa Japonica Group RepID=Q94CS5_ORYSJ | SoyBase | E_val: 9.00E-25 | ISS |
| UniRef100_UPI000233B482 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233B482 related cluster n=1 Tax=unknown RepID=UPI000233B482 | SoyBase | E_val: 1.00E-114 | ISS |
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Glyma15g05755 not represented in the dataset |
Glyma15g05755 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma08g19245 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.15g051900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma15g05755.2 sequence type=transcript gene model=Glyma15g05755 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CATTAGAACATTGCATCTTCAAAACATCACGGTTGGTAAATATTGTAATGTAACCCTCTTCATTTGTGATGAGCCTGAAAAGCAGCAAGAGGAGAATGAGGAATGGTTTCATGTGCCACTCTGAGGCATCAACTGCAGTGTGCATTGCTGGGTCTGTGGTTGTGCCTAGGACAAGGAGTAGGAGGCATCAGAGAAGTGTTTCTCTTGATGGTACAAGGTTGATCAACTATGCCAAGTACTCCAAACTTGTTGACTCCAGCACTAGCAGCAGGTTCAATTCAGCTCACAAGAAATGTGACTCTGACTCTGTCTCTGTACCAAACATCAAGCATCAAGAGAATGAATCAAGGGAACTTCAGAAAAAGCCAACAGATAATGTCTTCCAGGTGGTTGTGATGCGGGTTGCTATTCATTGTCAAGGATGCGCGGGTAAAGTGAAAAAGCATCTATCTAAGATGGAAGGAGGTTTCGAAGTCCATAAGTAAGCACACATATCTTGAACTCTATATCCTCATCTCCAAACTTCAATTAATTCGTGTTCTGCCGTTTTGTATTGGAGATAGATGCCAATAATTTAGCAATTAAAATTAAACCAAGCTGCAGATTGAAGCTTCTCCGGCCAGCTCCAAATTCAGCAAATTAAACATTGGGATGGAAGGAACTAAACGAAGCTACAAACATGACGGTAAGATTGAAATTTACTTTTGCTTTTCAGTTTTCAGTATTTCTTTTCTTTCCCTTCTTTGAAGTCTATATCATTTCATATATTATTATTTCGTGTGCTCCTTCATCAAATGGACACACCATATCACGTGGAATATGCACTGTTAATTCATTTTACTTTTTATTCAATTAGTCAGTTAAAACATTAATGCTTTTTTTCTGTCCA
>Glyma15g05755.1 sequence type=CDS gene model=Glyma15g05755 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGCCTGAAAAGCAGCAAGAGGAGAATGAGGAATGGTTTCATGTGCCACTCTGAGGCATCAACTGCAGTGTGCATTGCTGGGTCTGTGGTTGTGCCTAGGACAAGGAGTAGGAGGCATCAGAGAAGTGTTTCTCTTGATGGTACAAGGTTGATCAACTATGCCAAGTACTCCAAACTTGTTGACTCCAGCACTAGCAGCAGGTTCAATTCAGCTCACAAGAAATGTGACTCTGACTCTGTCTCTGTACCAAACATCAAGCATCAAGAGAATGAATCAAGGGAACTTCAGAAAAAGCCAACAGATAATGTCTTCCAGGTGGTTGTGATGCGGGTTGCTATTCATTGTCAAGGATGCGCGGGTAAAGTGAAAAAGCATCTATCTAAGATGGAAGGAGTTACATCATTCAGTGTAGATGTAGAGTCCAAGAGGGTGACAGTAATGGGACACATTTCTCCGGTGGGAGTCCTTGAGAGCATTTCAAAGGTGAAGAGGGCTGAGTTCTGGGATTGTTAA >Glyma15g05755.2 sequence type=CDS gene model=Glyma15g05755 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGCCTGAAAAGCAGCAAGAGGAGAATGAGGAATGGTTTCATGTGCCACTCTGAGGCATCAACTGCAGTGTGCATTGCTGGGTCTGTGGTTGTGCCTAGGACAAGGAGTAGGAGGCATCAGAGAAGTGTTTCTCTTGATGGTACAAGGTTGATCAACTATGCCAAGTACTCCAAACTTGTTGACTCCAGCACTAGCAGCAGGTTCAATTCAGCTCACAAGAAATGTGACTCTGACTCTGTCTCTGTACCAAACATCAAGCATCAAGAGAATGAATCAAGGGAACTTCAGAAAAAGCCAACAGATAATGTCTTCCAGGTGGTTGTGATGCGGGTTGCTATTCATTGTCAAGGATGCGCGGGTAAAGTGAAAAAGCATCTATCTAAGATGGAAGGAGGTTTCGAAGTCCATAAGTAA
>Glyma15g05755.1 sequence type=predicted peptide gene model=Glyma15g05755 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSLKSSKRRMRNGFMCHSEASTAVCIAGSVVVPRTRSRRHQRSVSLDGTRLINYAKYSKLVDSSTSSRFNSAHKKCDSDSVSVPNIKHQENESRELQKKPTDNVFQVVVMRVAIHCQGCAGKVKKHLSKMEGVTSFSVDVESKRVTVMGHISPVGVLESISKVKRAEFWDC* >Glyma15g05755.2 sequence type=predicted peptide gene model=Glyma15g05755 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSLKSSKRRMRNGFMCHSEASTAVCIAGSVVVPRTRSRRHQRSVSLDGTRLINYAKYSKLVDSSTSSRFNSAHKKCDSDSVSVPNIKHQENESRELQKKPTDNVFQVVVMRVAIHCQGCAGKVKKHLSKMEGGFEVHK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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