Glyma15g05710 - SoyBase

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Report for Sequence Feature Glyma15g05710

Feature Type:	gene_model
Chromosome:	Gm15
Start:	4017175
stop:	4025694
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g05710

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G22590	AT	Annotation by Michelle Graham. TAIR10: UDP-Glycosyltransferase superfamily protein \| chr2:9593012-9594424 FORWARD LENGTH=470	SoyBase	E_val: 6.00E-138	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0005575	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cellular component	SoyBase	N/A	ISS
GO:0016757	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups	SoyBase	N/A	ISS
GO:0016758	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring hexosyl groups	SoyBase	N/A	ISS
KOG1192	KOG	UDP-glucuronosyl and UDP-glucosyl transferase	JGI		ISS
PTHR11926	Panther	GLUCOSYL/GLUCURONOSYL TRANSFERASES	JGI		ISS
PTHR11926:SF15	Panther	UDP-GLUCURONOSYLTRANSFERASE RELATED	JGI		ISS
PF00201	PFAM	UDP-glucoronosyl and UDP-glucosyl transferase	JGI		ISS
UniRef100_D2D582	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: GT2 n=1 Tax=Medicago truncatula RepID=D2D582_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1MDU9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MDU9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g05710

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g05710

Paralog	Evidence	Comments
Glyma08g19290	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g05710 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g051400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g05710

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma15g05710

Limit To All Plant Sequences

>Glyma15g05710.2   sequence type=transcript   gene model=Glyma15g05710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAGTCTATGCATTTTTTAGTGAGTTCTTCCTCTTGGATTCATTTTTGCCTATATATTATTATACACAACACGGATGACATTAACATATTTTTCCTTATGCAGAGAAAAGAACCAATGGATCACTCAGTTTCAGTTTCATCCAATAAGCCTCTTCATGTTGTAATGTTCCCATGGCTAGCCATGGGTCACGTATACCCCTGCTTCGAGGTTTCCAAGATCCTTGCACAAAAGGGTCACTATGTCACTCTTGTTTCCACCCCTAAGATAATAGATCGCTTGCCCAAACTCCCTCAAACCTTATCACCATTTGTTAAACTAACCAAATTACTCTTATCGCCCCACATCGACAAGAACCATCTCCCACAAGATGCTGACTCCACAATGGACATTCCCTCCAACAAACTCTATTACCTCAAATTGGCCTATGATGCTCTCCAAGAACCTGTCTTTGAGGTTCTCAAAACTTCAAATCCTGATTGGGTTTTCTATGATTTTGCAGCAAGCTGGATTCCACAGCTAGCCAAGACCCTCAAAATTCACAGTGCCTATTTCAGTCCCTGCCCTGCATGGACCATATGCTTCTTTGACACACCAAAACAACAACTTGGTGATGCTGCTGCTGCCAATAGATCAAACCCTGAAGACTACTATGGCCCTCCCAAGTGGGTTCCTTTCCCTACAAAGATTGGTCTAAGACCCTATGAGGTGAGGAAGCTCTTAGAAGATATCAAGGTCAACGAGACAGGTGCCTCACCTGTTTTTGATCTCAACACAGCAAATTCAGGTTGTGACATGTTTGTCATCAGAAGCTCCAGAGACCTTGAACAAGAGTGGTTGGATTATCTTGCTGAGTTTTACCACAAGCCTGTGGTTCCTGTGGGGTTGCTTCCACCGTTAAGAGGCTCTGATGAGGAGGACAATAGCCCCGATTGGCTTCAGATCAAGGCATGGCTAGATACACAGAAAGGGTCATCAGTGGTGTACATTGCATTTGGGAGTGAGGTGAAACTGAGCCAAGAGAACCTCAATGAGTTGGCTCTTGGAATTGAGCTTTCAGGGTTGTCTTTCTTCTGGGTCTTGAGGAAGGGCTCGGTTGAGTTTTTGCGAGAAGGGTTTGAGGATCGGACCAAAGATCGAGGTGTTGTTTGGAAAACTTGGGCACCCCAGCCTAAGATATTGGCTCATGCATCGGTTGGTGGGTGCTTGACTCATTGTGGTTCTGGTTCAATGATCGAAAATCTCATCTTTGGACACGTTCTTGTGATGTTGCCCTTCTTGCTAGACCAAGCTTTATATTCAAGAGTGATGGAAGAGAAGAAAGTGGGAATTGAGATTCCAAGGAATGAGCAAGATGGGTCGTTCACAAGAAGCTCAGTGGCCAAGGCATTGAGATTGGCAATGGTGGAAGAGGAGGGAAGTGCTTATAGGAACAATGCTAAAGAGTTGGGCAAGAAATTTAGCAACAAGGAGCTCGATGACCAATACATTGAAGATTTCATTGCTTCCCTTCACAATCACAAGCATACATAGGAGGGATTAGGTGGATATGAGTATTTGATTATTTGAGTTAGTACAGGTCTTTTTACTTTTCTAAAATTTCACCTGTTTTTTTAAAATAAATTAAGTATGGTTCAAGTTCAACCATTGACGTATTAAATTTTGAAAAGAAAAATTATACCTTGCACACACAATATGTTAATTGATACTCAGTGATAAAGAGAGAGAAGTATAAGTTATACATATTGCGATTTAAGGTGAAGAGAAAGACAAAGAGAAAGAAGATGTGTTTGTTAAGTGTTTAAATAATACGAGTGTCCATATATGATCATTCTTTTGAAAAATATTTCATGAACATCAAATATGTTATAATATACCTAGAGAGAGACCAAAGTATAAGTTATGCATATTGTGATTTGAGGTGAAGAGAGAGACAAAGAGAAAAAATATGTGTTTAAAAAACACGAATGTCCATGTATCATCATTTTTTTGAAAAATATTTTATGAACACCCAATGCCCGAGTCCTCGAAACAATCCCACGTTCCTTGGTTATTTCCTCAAACCCCTCTGGCAACTCAAGCAGACCCTCCTTCAGGTTCTTCAATGCCCAAAAGAAAGGCAAACCAGAAAATATTCGGCTACTCTCCTTTCTTTATGTATTTCATCTCTTGTAATAAACTATGTGATTTCAACCATAATTTTAGAAAATAATTAGCAACCGCG

Coding sequences of Glyma15g05710

Limit To All Plant Sequences

>Glyma15g05710.1   sequence type=CDS   gene model=Glyma15g05710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCATTTTTTAAGAAAAGAACCAATGGATCACTCAGTTTCAGTTTCATCCAATAAGCCTCTTCATGTTGTAATGTTCCCATGGCTAGCCATGGGTCACGTATACCCCTGCTTCGAGGTTTCCAAGATCCTTGCACAAAAGGGTCACTATGTCACTCTTGTTTCCACCCCTAAGATAATAGATCGCTTGCCCAAACTCCCTCAAACCTTATCACCATTTGTTAAACTAACCAAATTACTCTTATCGCCCCACATCGACAAGAACCATCTCCCACAAGATGCTGACTCCACAATGGACATTCCCTCCAACAAACTCTATTACCTCAAATTGGCCTATGATGCTCTCCAAGAACCTGTCTTTGAGGTTCTCAAAACTTCAAATCCTGATTGGGTTTTCTATGATTTTGCAGCAAGCTGGATTCCACAGCTAGCCAAGACCCTCAAAATTCACAGTGCCTATTTCAGTCCCTGCCCTGCATGGACCATATGCTTCTTTGACACACCAAAACAACAACTTGGTGATGCTGCTGCTGCCAATAGATCAAACCCTGAAGACTACTATGGCCCTCCCAAGTGGGTTCCTTTCCCTACAAAGATTGGTCTAAGACCCTATGAGGTGAGGAAGCTCTTAGAAGATATCAAGGTCAACGAGACAGGTGCCTCACCTGTTTTTGATCTCAACACAGCAAATTCAGGTTGTGACATGTTTGTCATCAGAAGCTCCAGAGACCTTGAACAAGAGTGGTTGGATTATCTTGCTGAGTTTTACCACAAGCCTGTGGTTCCTGTGGGGTTGCTTCCACCGTTAAGAGGCTCTGATGAGGAGGACAATAGCCCCGATTGGCTTCAGATCAAGGCATGGCTAGATACACAGAAAGGGTCATCAGTGGTGTACATTGCATTTGGGAGTGAGGTGAAACTGAGCCAAGAGAACCTCAATGAGTTGGCTCTTGGAATTGAGCTTTCAGGGTTGTCTTTCTTCTGGGTCTTGAGGAAGGGCTCGGTTGAGTTTTTGCGAGAAGGGTTTGAGGATCGGACCAAAGATCGAGGTGTTGTTTGGAAAACTTGGGCACCCCAGCCTAAGATATTGGCTCATGCATCGGTTGGTGGGTGCTTGACTCATTGTGGTTCTGGTTCAATGATCGAAAATCTCATCTTTGGACACGTTCTTGTGATGTTGCCCTTCTTGCTAGACCAAGCTTTATATTCAAGAGTGATGGAAGAGAAGAAAGTGGGAATTGAGATTCCAAGGAATGAGCAAGATGGGTCGTTCACAAGAAGCTCAGTGGCCAAGGCATTGAGATTGGCAATGGTGGAAGAGGAGGGAAGTGCTTATAGGAACAATGCTAAAGAGTTGGGCAAGAAATTTAGCAACAAGGAGCTCGATGACCAATACATTGAAGATTTCATTGCTTCCCTTCACAATCACAAGCATACATAG

>Glyma15g05710.2   sequence type=CDS   gene model=Glyma15g05710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCATTTTTTAGTGAGTTCTTCCTCTTGGATTCATTTTTGCCTATATATTATTATACACAACACGGATGACATTAACATATTTTTCCTTATGCAGAGAAAAGAACCAATGGATCACTCAGTTTCAGTTTCATCCAATAAGCCTCTTCATGTTGTAATGTTCCCATGGCTAGCCATGGGTCACGTATACCCCTGCTTCGAGGTTTCCAAGATCCTTGCACAAAAGGGTCACTATGTCACTCTTGTTTCCACCCCTAAGATAATAGATCGCTTGCCCAAACTCCCTCAAACCTTATCACCATTTGTTAAACTAACCAAATTACTCTTATCGCCCCACATCGACAAGAACCATCTCCCACAAGATGCTGACTCCACAATGGACATTCCCTCCAACAAACTCTATTACCTCAAATTGGCCTATGATGCTCTCCAAGAACCTGTCTTTGAGGTTCTCAAAACTTCAAATCCTGATTGGGTTTTCTATGATTTTGCAGCAAGCTGGATTCCACAGCTAGCCAAGACCCTCAAAATTCACAGTGCCTATTTCAGTCCCTGCCCTGCATGGACCATATGCTTCTTTGACACACCAAAACAACAACTTGGTGATGCTGCTGCTGCCAATAGATCAAACCCTGAAGACTACTATGGCCCTCCCAAGTGGGTTCCTTTCCCTACAAAGATTGGTCTAAGACCCTATGAGGTGAGGAAGCTCTTAGAAGATATCAAGGTCAACGAGACAGGTGCCTCACCTGTTTTTGATCTCAACACAGCAAATTCAGGTTGTGACATGTTTGTCATCAGAAGCTCCAGAGACCTTGAACAAGAGTGGTTGGATTATCTTGCTGAGTTTTACCACAAGCCTGTGGTTCCTGTGGGGTTGCTTCCACCGTTAAGAGGCTCTGATGAGGAGGACAATAGCCCCGATTGGCTTCAGATCAAGGCATGGCTAGATACACAGAAAGGGTCATCAGTGGTGTACATTGCATTTGGGAGTGAGGTGAAACTGAGCCAAGAGAACCTCAATGAGTTGGCTCTTGGAATTGAGCTTTCAGGGTTGTCTTTCTTCTGGGTCTTGAGGAAGGGCTCGGTTGAGTTTTTGCGAGAAGGGTTTGAGGATCGGACCAAAGATCGAGGTGTTGTTTGGAAAACTTGGGCACCCCAGCCTAAGATATTGGCTCATGCATCGGTTGGTGGGTGCTTGACTCATTGTGGTTCTGGTTCAATGATCGAAAATCTCATCTTTGGACACGTTCTTGTGATGTTGCCCTTCTTGCTAGACCAAGCTTTATATTCAAGAGTGATGGAAGAGAAGAAAGTGGGAATTGAGATTCCAAGGAATGAGCAAGATGGGTCGTTCACAAGAAGCTCAGTGGCCAAGGCATTGAGATTGGCAATGGTGGAAGAGGAGGGAAGTGCTTATAGGAACAATGCTAAAGAGTTGGGCAAGAAATTTAGCAACAAGGAGCTCGATGACCAATACATTGAAGATTTCATTGCTTCCCTTCACAATCACAAGCATACATAG

Predicted protein sequences of Glyma15g05710

Limit To All Plant Sequences

>Glyma15g05710.1   sequence type=predicted peptide   gene model=Glyma15g05710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MHFLRKEPMDHSVSVSSNKPLHVVMFPWLAMGHVYPCFEVSKILAQKGHYVTLVSTPKIIDRLPKLPQTLSPFVKLTKLLLSPHIDKNHLPQDADSTMDIPSNKLYYLKLAYDALQEPVFEVLKTSNPDWVFYDFAASWIPQLAKTLKIHSAYFSPCPAWTICFFDTPKQQLGDAAAANRSNPEDYYGPPKWVPFPTKIGLRPYEVRKLLEDIKVNETGASPVFDLNTANSGCDMFVIRSSRDLEQEWLDYLAEFYHKPVVPVGLLPPLRGSDEEDNSPDWLQIKAWLDTQKGSSVVYIAFGSEVKLSQENLNELALGIELSGLSFFWVLRKGSVEFLREGFEDRTKDRGVVWKTWAPQPKILAHASVGGCLTHCGSGSMIENLIFGHVLVMLPFLLDQALYSRVMEEKKVGIEIPRNEQDGSFTRSSVAKALRLAMVEEEGSAYRNNAKELGKKFSNKELDDQYIEDFIASLHNHKHT*

>Glyma15g05710.2   sequence type=predicted peptide   gene model=Glyma15g05710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MHFLVSSSSWIHFCLYIIIHNTDDINIFFLMQRKEPMDHSVSVSSNKPLHVVMFPWLAMGHVYPCFEVSKILAQKGHYVTLVSTPKIIDRLPKLPQTLSPFVKLTKLLLSPHIDKNHLPQDADSTMDIPSNKLYYLKLAYDALQEPVFEVLKTSNPDWVFYDFAASWIPQLAKTLKIHSAYFSPCPAWTICFFDTPKQQLGDAAAANRSNPEDYYGPPKWVPFPTKIGLRPYEVRKLLEDIKVNETGASPVFDLNTANSGCDMFVIRSSRDLEQEWLDYLAEFYHKPVVPVGLLPPLRGSDEEDNSPDWLQIKAWLDTQKGSSVVYIAFGSEVKLSQENLNELALGIELSGLSFFWVLRKGSVEFLREGFEDRTKDRGVVWKTWAPQPKILAHASVGGCLTHCGSGSMIENLIFGHVLVMLPFLLDQALYSRVMEEKKVGIEIPRNEQDGSFTRSSVAKALRLAMVEEEGSAYRNNAKELGKKFSNKELDDQYIEDFIASLHNHKHT*

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