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Report for Sequence Feature Glyma15g05660

Feature Type:gene_model
Chromosome:Gm15
Start:3985031
stop:3988435
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma15g05660
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G03050AT Annotation by Michelle Graham. TAIR10: ENTH/ANTH/VHS superfamily protein | chr1:707726-709860 FORWARD LENGTH=599 SoyBaseE_val: 0ISS
GO:0006499GO-bp Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation SoyBaseN/AISS
GO:0048268GO-bp Annotation by Michelle Graham. GO Biological Process: clathrin coat assembly SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0030118GO-cc Annotation by Michelle Graham. GO Cellular Compartment: clathrin coat SoyBaseN/AISS
GO:0005543GO-mf Annotation by Michelle Graham. GO Molecular Function: phospholipid binding SoyBaseN/AISS
GO:0005545GO-mf Annotation by Michelle Graham. GO Molecular Function: 1-phosphatidylinositol binding SoyBaseN/AISS
GO:0030276GO-mf Annotation by Michelle Graham. GO Molecular Function: clathrin binding SoyBaseN/AISS
KOG0251 KOG Clathrin assembly protein AP180 and related proteins, contain ENTH domain JGI ISS
PTHR22951Panther CLATHRIN ASSEMBLY PROTEIN JGI ISS
PTHR22951:SF1Panther CLATHRIN ASSEMBLY PROTEIN JGI ISS
PF07651PFAM ANTH domain JGI ISS
UniRef100_B9SCP6UniRef Annotation by Michelle Graham. Most informative UniRef hit: Clathrin assembly protein, putative n=1 Tax=Ricinus communis RepID=B9SCP6_RICCO SoyBaseE_val: 0ISS
UniRef100_I1MDU2UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MDU2_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma15g05660
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g05660
ParalogEvidenceComments
Glyma08g19330 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g05660 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.15g050900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma15g05660
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma15g05660
>Glyma15g05660.1   sequence type=CDS   gene model=Glyma15g05660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCCAAGCTCTAAATTCAGAAGAGCCCTTGGGGCAGTGAAGGATCAAACAAGCATAAGCCTAGCGAAGGTGGGAAGCAGCACCTCAGTTGCTGACCTTGATGTGGCGATTGTGAAGGCAACAAGGCACGATGAATACCCAGCAGAAGAGAAGCACATAAGGGAAATTCTGAGCCTAACATGTTACTCTCGAGCATTCATCAGTGCATGTGTTAATACCCTCACAAGGCGTCTCAACAAGACAAAGAGCTGGACAGTGGCTTTGAAAACACTTGTTTTGATTCAAAGGTTGCTATTAGAAGGTGATCCTGCCTATGAGCAGGAAATTTTCTTTTCAACTCGACGCGGGACTCGCCTTCTCAACATGTCTGATTTTCGTGACAACTCAAAATCTGATTCTTGGGACTTCTCTGCATTTGTGCGAACATATGCATTGTATCTAGACGAAAGGCTTGAGTACAAGATGCAAAGCCGGCGTGGAATGCGCAGCATGTATGGTTTAGATGAAGATGAGGAGGAAAGGGAAAGAGAAAAGGAAATCATTGTGAGATCCACACCAGTGCGTGACATGAAGTTAGACCAAATCTTTTCCAAAATGCAGCATTTGCAATTGCTGCTTGAGCGCTTTTTAGCTTGCCGCCCCACAGGAGGTGCAAAGAACCATCGAATTGTGATAGTGGCTCTCTACCCGATTGTGAAGGAGAGTTTTAGGATATATTATGATATATCAGAAATACTTAGTATCTTAATTGATCGCTTCCCTGACATGGAAGTGTCAGACTGTGTTAAGGTGTATGACATTTTCTGCCGTGTTGGAAAGCAGTTTGATGAGCTAGACCTCTTTTTTGGATGGTCCAAGAGCATTGGAATTGCACGCTCTTCTGAGTACCCTGAGATTGAAAGGGTCACACTTAAGAAGTTAGAGGTCATGGAAGAGTTTATCAAGGACAAGTCCGCCTTAGCACAAAGCAACAAACTTGAAGCAATAGAATATAAGACCCAAGAAGAAGAAGTAGCTTACGAACCGGAACCGGAACCAGAACCGGAAGAGGATGTTAATGCAACCAATGCACTACCACCACCACCAGAGGAAATCAACGAGGAAGCGGTTGAAGAAGTGAAGGAGGAGCCAAAGGAAGGAAAAGTTGTGCAGACAGAGGGAGATTTGTTGAATTTAGGCGATGATATGATGACAAGTGAAGAACATGGGGAGAAACTAGCATTGGCTTTGTTTGATGGAGCAGTACCAGAAGCAGCAACAGGTGCCACACAAGCACTTCCGTGGCACGCATTTGATGAAGGAGCAGCAGATTGGGAAACAACACTGGTGCAATCAGCAACCAACTTGTCCAACCAAAAGCCAACATATGGTGGTGGCTTTGATACATTGTTGTTGGATGGCATGTATAAACAAGGAGAAGTGAATGCAGCCATGCAAGGACAAGGGTACGGGGTGAGTGGAAGTGCTAGTAGTGTGGCACTTGGTTCAGCTGGAAGACCTTCAATGCTTGCACTGCCAGCTCCACCAACATCAAGGAGTGGTAGTGATTCTATTAGTTCAGATCCATTTGCAGCTTCATTGGCTGTGGCACCTCCTTCTTACGTGCAAATGTCAGAGATGGAGAAGAAACAGAGGTTTTTGGTTGAAGAACAGATGATGTGGCAGCAATATGCAAAGGATGGCATGCAAGGACAAGCAGCACTTGCAAAATTACACTCTAACAACAACAATAATAACAATTCTTACACAGGAGGTTATCCACAAAACTATGGCAACTATTATCGTTAA
Predicted protein sequences of Glyma15g05660
>Glyma15g05660.1   sequence type=predicted peptide   gene model=Glyma15g05660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAPSSKFRRALGAVKDQTSISLAKVGSSTSVADLDVAIVKATRHDEYPAEEKHIREILSLTCYSRAFISACVNTLTRRLNKTKSWTVALKTLVLIQRLLLEGDPAYEQEIFFSTRRGTRLLNMSDFRDNSKSDSWDFSAFVRTYALYLDERLEYKMQSRRGMRSMYGLDEDEEEREREKEIIVRSTPVRDMKLDQIFSKMQHLQLLLERFLACRPTGGAKNHRIVIVALYPIVKESFRIYYDISEILSILIDRFPDMEVSDCVKVYDIFCRVGKQFDELDLFFGWSKSIGIARSSEYPEIERVTLKKLEVMEEFIKDKSALAQSNKLEAIEYKTQEEEVAYEPEPEPEPEEDVNATNALPPPPEEINEEAVEEVKEEPKEGKVVQTEGDLLNLGDDMMTSEEHGEKLALALFDGAVPEAATGATQALPWHAFDEGAADWETTLVQSATNLSNQKPTYGGGFDTLLLDGMYKQGEVNAAMQGQGYGVSGSASSVALGSAGRPSMLALPAPPTSRSGSDSISSDPFAASLAVAPPSYVQMSEMEKKQRFLVEEQMMWQQYAKDGMQGQAALAKLHSNNNNNNNSYTGGYPQNYGNYYR*






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