Glyma15g05610 - SoyBase

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Report for Sequence Feature Glyma15g05610

Feature Type:	gene_model
Chromosome:	Gm15
Start:	3957262
stop:	3957917
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g05610

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G43660	AT	Annotation by Michelle Graham. TAIR10: Vacuolar iron transporter (VIT) family protein \| chr3:15565332-15565928 FORWARD LENGTH=198	SoyBase	E_val: 4.00E-68	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005575	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cellular component	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG4473	KOG	Uncharacterized membrane protein	JGI		ISS
PF01988	PFAM	VIT family	JGI		ISS
UniRef100_I1MDT6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1MDT6_SOYBN	SoyBase	E_val: 4.00E-98	ISS
UniRef100_Q9M2C0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Vacuolar iron transporter homolog 4 n=1 Tax=Arabidopsis thaliana RepID=VITH4_ARATH	SoyBase	E_val: 2.00E-65	ISS

Expression Patterns of Glyma15g05610

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g05610

Paralog	Evidence	Comments
Glyma08g19390	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g05610 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma15g05610

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g05610

Limit To All Plant Sequences

>Glyma15g05610.2   sequence type=CDS   gene model=Glyma15g05610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAAACAATGTTCAACCATGTCATGACCTTGATCCTAGAGAAGCCAAAAGCCCTTCAAAGATGTTAAACTTGGACGTGGAAGCACAGTTGAGGGAGGAGGAGAAGGGTTTTGACTATGCGAAGAGGGCACAGTGGCTTAGAGCTGCTGTTTTGGGTGCCAATGATGGGTTGCTCTCAACAGCATCCCTCATGATGGGAGTTGGAGCTGTGAGGAAGGATGTTAAGAGCATGATACTAACTGGGGTGGCAGGGTTGGTGGCTGGAGCATGCAGCATGGCCATTGGAGAGTTTGTTTCTGTTTACTCACAGGAAACATGGGATCAGAAGGATAAGTTGCCAAACCCTTATTATGCTGCTTTTGCCTCTGCCCTTGCCTTTGCTGTTGGGGCAGGGGCTGGTGTGGTGGCGGCTGTTGTCACCCTTGCTTTGGTTGTCTTTGGAGATTTGGGGGCCTTTTTAGGGAAAGCACCCAGGGTTAAGTCCACTTTCAGGGTTTTGATTGGGGCTTGGATGGCCATGGCAATTACTTTTGCTTTAACAAAGCTTGTTGATCATCTTGGACTTGGAGTAGTTTGA

Predicted protein sequences of Glyma15g05610

Limit To All Plant Sequences

>Glyma15g05610.2   sequence type=predicted peptide   gene model=Glyma15g05610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MANNVQPCHDLDPREAKSPSKMLNLDVEAQLREEEKGFDYAKRAQWLRAAVLGANDGLLSTASLMMGVGAVRKDVKSMILTGVAGLVAGACSMAIGEFVSVYSQETWDQKDKLPNPYYAAFASALAFAVGAGAGVVAAVVTLALVVFGDLGAFLGKAPRVKSTFRVLIGAWMAMAITFALTKLVDHLGLGVV*

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