Report for Sequence Feature Glyma15g05540
Feature Type: gene_model
Chromosome: Gm15
Start: 3925141
stop: 3928915
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma15g05540
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G68170 AT
Annotation by Michelle Graham. TAIR10: nodulin MtN21 /EamA-like transporter family protein | chr1:25551925-25554258 FORWARD LENGTH=356
SoyBase E_val: 2.00E-92 ISS
GO:0045893 GO-bp
Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent
SoyBase N/A ISS
GO:0016020 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: membrane
SoyBase N/A ISS
PF00892 PFAM
EamA-like transporter family
JGI ISS
UniRef100_G7IL80 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Auxin-induced protein 5NG4 n=1 Tax=Medicago truncatula RepID=G7IL80_MEDTR
SoyBase E_val: 0 ISS
UniRef100_UPI000233B47D UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233B47D related cluster n=1 Tax=unknown RepID=UPI000233B47D
SoyBase E_val: 0 ISS
Expression Patterns of Glyma15g05540
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma15g05540
Paralog Evidence Comments
Glyma08g19460 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma15g05540 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.15g049900 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma15g05540
Coding sequences of Glyma15g05540
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma15g05540.1 sequence type=CDS gene model=Glyma15g05540 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAAGGATGTGTGCAATGTGGTGCAGGGGTTGAAACCTGTGCTGCTAATGGTAATGGTGCAGATAACATTTGCAGGGGTCAATGTCTTCTACAAGCTCGCCGTAAACGATGGCATGAGCTTGAGGGTCGTTGTTGCCTACCGCTTTGTATTCGCCACAGTTTTCATAGCTCCACTTGCTCTCATCGTTGAAAGGGGATCATTAGCTCAAAATTTCTACTTGCAAGCCCTGGATTTAACTTCTGCAACGTTTGCATCTGCAATGTCTAACCTTTTACCAGGCATAACATTTATCTTGGCCGTTTGCTTCGGTTTAGAAAGATTAAATTTGACAACAGCAGCAGGGAAGGCCAAAATAGTGGGTACATTAATTGGAATTGGTGGAGCAATGGTACTTACTTTCGTTAAAGGTGAGGAAATCGAATTGGGGTCCTTTCATTTGAACCTTTTGCATCCCCCAAACGGAACGCACGCACACGCTACTACCGGGGCTCATACCCTCTTGGGTTCTCTGTGCGCCCTGGGTAGTGGCATCAGCTATGCATTGTGGCTCATCATTCAGGCCAAGATGATTGAAAGATACCCTAGTCCTTACTCAAGCACGGCGTTGATGTCACTTTGGGGGTCACTGCTGTCCATTGTGTTTGCACTTTGCGTTGAGAGGGACTGGAGCCAGTGGAGGTTGGGTTGGAATATTAGGCTTTTGACTGCAGCATATACGGGTATTGTGGTTTCTGGGGTGATGGTGGTTGTGATTTCATGGTGCGTCCACATGAGAGGCCCATTGTTTGTCTCTGTTTTTAGCCCCCTGATGCTCGTGATGGTGGCCTTGGCTGGTCCTACGATGTTGAACGAGAAGCTACACCTTGGATGCGCTATTGGAACAGTGCTGATTGTGTGTGGCTTATATGTGGTATTATGGGGTAAAAGTAAAGAGATGAAGAAGAAGAATCAATTAGTGCCAGCACAAAGCCCCCATGACAATGAATCTAATACGGTCGAAATAGTGGTGAGGCCTGCACAAGAAGATAAAAGCAACCGAAATAAACCCATGAAATTGTTGCAAAAGTAG
Predicted protein sequences of Glyma15g05540
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma15g05540.1 sequence type=predicted peptide gene model=Glyma15g05540 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MKDVCNVVQGLKPVLLMVMVQITFAGVNVFYKLAVNDGMSLRVVVAYRFVFATVFIAPLALIVERGSLAQNFYLQALDLTSATFASAMSNLLPGITFILAVCFGLERLNLTTAAGKAKIVGTLIGIGGAMVLTFVKGEEIELGSFHLNLLHPPNGTHAHATTGAHTLLGSLCALGSGISYALWLIIQAKMIERYPSPYSSTALMSLWGSLLSIVFALCVERDWSQWRLGWNIRLLTAAYTGIVVSGVMVVVISWCVHMRGPLFVSVFSPLMLVMVALAGPTMLNEKLHLGCAIGTVLIVCGLYVVLWGKSKEMKKKNQLVPAQSPHDNESNTVEIVVRPAQEDKSNRNKPMKLLQK*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
