Glyma15g05530 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma15g05530

Feature Type:	gene_model
Chromosome:	Gm15
Start:	3909901
stop:	3915708
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g05530

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G68170	AT	Annotation by Michelle Graham. TAIR10: nodulin MtN21 /EamA-like transporter family protein \| chr1:25551925-25554258 FORWARD LENGTH=356	SoyBase	E_val: 7.00E-98	ISS
GO:0045893	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
PF00892	PFAM	EamA-like transporter family	JGI		ISS
UniRef100_G7IL80	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Auxin-induced protein 5NG4 n=1 Tax=Medicago truncatula RepID=G7IL80_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1MDT0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MDT0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g05530

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g05530

Paralog	Evidence	Comments
Glyma08g19480	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g05530 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g049800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g05530

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma15g05530

Limit To All Plant Sequences

>Glyma15g05530.2   sequence type=transcript   gene model=Glyma15g05530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CATCTTTTCTGCATTGGAATCTACAGTTCTAGACTGCCCATAAATACATAATACTCCTCACAGCTGTGATTTTTGTGACGCCGCCGCCGTTTGTTGTGGGGGTGGCGGTGACAGCAAGATGGATATGTGTAACGTAGTGCATGCATTAAAACCAGTTATGCTAATGGTGCTGGTGCAGGTTGCAAATGCTTGGGTCAATGTTCTCTACAAGCTCGCGCTTAACGATGGCATGAACTTGAGTGTCATTGTTGCTTACCGTTATGTTTTTGCAACTGCTTTCATTGCTCCACTTGCTTTCATTCTTGAAAGGAAGACGAGGACAAAGATGACTTGGAGGATACTGTTTCAGGCATTTCTTTGCGGCTTAATTGGTGGAGTATTGCCTCAAAACTTAAACATGGAAGCGATTGCTTTAACTTCAGTAACGTTTACAACCGCCATATCCAACCTCATTCCAGCCATCACTTTTATCATATCCCTCTCCTTCGGATTGGAGAGATTAAATTTAAAAACAAAAGGAGGGAAAGCAAAGATAATTGGAACGATAACTGGAATTAGTGGGGCAATGATACTGACATTTATTAAAGGCCCAGAAGTTAAGATGTTGTCTTTCCATGTAAACCTTTTCAACCACCAAAACGGCCATGTCGTACATTCACACGCTTCTTCAGGCCTTATGACCATATTTGGTGCTCTCGCCTCTGTCGCAAGCAACGTCTCTTATGCCATGTGGCTTATCATTCAGGCAAAGATGAGTGAAAGATACCCGTGTCCTTATTCGAGCACAGCGTTGATGTCCCTAATGGGGGCACTCTTATCCATTTCATTTGCTTTTTGTGTTGAAAGGGATTTGAGTCAGTGGAGGTTGGATTGGAATGTCAGACTATTGACTGTGGCTTATGCGGGTATAGTAGTTTCTGGAGTGATGGTAGCCGTGATTTCGTGGTGTGTACGCACGAGAGGTCCACTGTTTGTCTCCGTTTTTAGCCCTCTAATGCTTGTCGTTGTGGCCTTTGCTGGATCCACTATTTTGGACGAGAAACTATACCTTGGAAGCTTTATTGGATCAATGTTAATTATTTGCGGATTATACGCGGTTCTTTGGGGTAAGAGCAAAGAGATGAAGAAGAATCAATCTGTTCCGCCAGAAAGCATCCATAAATCTGACACAGTTGAAATAATGGTCAAATCTCGCGTAGAAGATAAAAGCAACAATAAGAGCAATACCCTCGTTAATTCTGTAAATGCGACTGCGGATAATAAAGATTCATGGGAAAATAGATGTGAAAACAATGTAACACATATACACTGCTGCAAGGAGCGAGAAGAAGAAGTAACATCTCAGAATGGCTCACGTACCTAAACATTGCATGCATGTAAGGCACTAATTGCACAATGTAGATAGCTTGCCATCCTTTTCCAACCGCCCCAACATGCTGTGGGCATTTTTTTGTATTGTTGGAGAAGGTAAGGCACGACTAGAATGTCTTCTTTTCTCTTGGTCCTTCCTATATGTTGTAATTGGGTGCTTAAACCCAAATTGCAAAAACAAAGGTTGTATTCAAGTTCAACTTAAAAATGGATCTGCTGAGAACGCCATCTTTAGTTTC

Coding sequences of Glyma15g05530

Limit To All Plant Sequences

>Glyma15g05530.1   sequence type=CDS   gene model=Glyma15g05530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATATGTGTAACGTAGTGCATGCATTAAAACCAGTTATGCTAATGGTGCTGGTGCAGGTTGCAAATGCTTGGGTCAATGTTCTCTACAAGCTCGCGCTTAACGATGGCATGAACTTGAGTGTCATTGTTGCTTACCGTTATGTTTTTGCAACTGCTTTCATTGCTCCACTTGCTTTCATTCTTGAAAGGAAGACGAGGACAAAGATGACTTGGAGGATACTGTTTCAGGCATTTCTTTGCGGCTTAATTGGTGGAGTATTGCCTCAAAACTTAAACATGGAAGCGATTGCTTTAACTTCAGTAACGTTTACAACCGCCATATCCAACCTCATTCCAGCCATCACTTTTATCATATCCCTCTCCTTCGGATTGGAGAGATTAAATTTAAAAACAAAAGGAGGGAAAGCAAAGATAATTGGAACGATAACTGGAATTAGTGGGGCAATGATACTGACATTTATTAAAGGCCCAGAAGTTAAGATGTTGTCTTTCCATGTAAACCTTTTCAACCACCAAAACGGCCATGTCGTACATTCACACGCTTCTTCAGGCCTTATGACCATATTTGGTGCTCTCGCCTCTGTCGCAAGCAACGTCTCTTATGCCATGTGGCTTATCATTCAGGCAAAGATGAGTGAAAGATACCCGTGTCCTTATTCGAGCACAGCGTTGATGTCCCTAATGGGGGCACTCTTATCCATTTCATTTGCTTTTTGTGTTGAAAGGGATTTGAGTCAGTGGAGGTTGGATTGGAATGTCAGACTATTGACTGTGGCTTATGCGGGTATAGTAGTTTCTGGAGTGATGGTAGCCGTGATTTCGTGGTGTGTACGCACGAGAGGTCCACTGTTTGTCTCCGTTTTTAGCCCTCTAATGCTTGTCGTTGTGGCCTTTGCTGGATCCACTATTTTGGACGAGAAACTATACCTTGGAAGCTTTATTGGATCAATGTTAATTATTTGCGGATTATACGCGGTTCTTTGGGGTAAGAGCAAAGAGATGAAGAAGAATCAATCTGTTCCGCCAGAAAGCATCCATAAATCTGACACAGTTGAAATAATGGTCAAATCTCGCGTAGAAGATAAAAGCAACAATAAGAGCAATACCCTCGTTAATTCTGTAAATGCGACTGCGGATAATAAAGATTCATGGGAAAATAGATGTGAAAACAATGTAACACATATACACTGCTGCAAGGAGCGAGAAGAAGAAGTAACATCTCAGAATGGCTCACGTACCTAA

>Glyma15g05530.2   sequence type=CDS   gene model=Glyma15g05530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATATGTGTAACGTAGTGCATGCATTAAAACCAGTTATGCTAATGGTGCTGGTGCAGGTTGCAAATGCTTGGGTCAATGTTCTCTACAAGCTCGCGCTTAACGATGGCATGAACTTGAGTGTCATTGTTGCTTACCGTTATGTTTTTGCAACTGCTTTCATTGCTCCACTTGCTTTCATTCTTGAAAGGAAGACGAGGACAAAGATGACTTGGAGGATACTGTTTCAGGCATTTCTTTGCGGCTTAATTGGTGGAGTATTGCCTCAAAACTTAAACATGGAAGCGATTGCTTTAACTTCAGTAACGTTTACAACCGCCATATCCAACCTCATTCCAGCCATCACTTTTATCATATCCCTCTCCTTCGGATTGGAGAGATTAAATTTAAAAACAAAAGGAGGGAAAGCAAAGATAATTGGAACGATAACTGGAATTAGTGGGGCAATGATACTGACATTTATTAAAGGCCCAGAAGTTAAGATGTTGTCTTTCCATGTAAACCTTTTCAACCACCAAAACGGCCATGTCGTACATTCACACGCTTCTTCAGGCCTTATGACCATATTTGGTGCTCTCGCCTCTGTCGCAAGCAACGTCTCTTATGCCATGTGGCTTATCATTCAGGCAAAGATGAGTGAAAGATACCCGTGTCCTTATTCGAGCACAGCGTTGATGTCCCTAATGGGGGCACTCTTATCCATTTCATTTGCTTTTTGTGTTGAAAGGGATTTGAGTCAGTGGAGGTTGGATTGGAATGTCAGACTATTGACTGTGGCTTATGCGGGTATAGTAGTTTCTGGAGTGATGGTAGCCGTGATTTCGTGGTGTGTACGCACGAGAGGTCCACTGTTTGTCTCCGTTTTTAGCCCTCTAATGCTTGTCGTTGTGGCCTTTGCTGGATCCACTATTTTGGACGAGAAACTATACCTTGGAAGCTTTATTGGATCAATGTTAATTATTTGCGGATTATACGCGGTTCTTTGGGGTAAGAGCAAAGAGATGAAGAAGAATCAATCTGTTCCGCCAGAAAGCATCCATAAATCTGACACAGTTGAAATAATGGTCAAATCTCGCGTAGAAGATAAAAGCAACAATAAGAGCAATACCCTCGTTAATTCTGTAAATGCGACTGCGGATAATAAAGATTCATGGGAAAATAGATGTGAAAACAATGTAACACATATACACTGCTGCAAGGAGCGAGAAGAAGAAGTAACATCTCAGAATGGCTCACGTACCTAA

Predicted protein sequences of Glyma15g05530

Limit To All Plant Sequences

>Glyma15g05530.1   sequence type=predicted peptide   gene model=Glyma15g05530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDMCNVVHALKPVMLMVLVQVANAWVNVLYKLALNDGMNLSVIVAYRYVFATAFIAPLAFILERKTRTKMTWRILFQAFLCGLIGGVLPQNLNMEAIALTSVTFTTAISNLIPAITFIISLSFGLERLNLKTKGGKAKIIGTITGISGAMILTFIKGPEVKMLSFHVNLFNHQNGHVVHSHASSGLMTIFGALASVASNVSYAMWLIIQAKMSERYPCPYSSTALMSLMGALLSISFAFCVERDLSQWRLDWNVRLLTVAYAGIVVSGVMVAVISWCVRTRGPLFVSVFSPLMLVVVAFAGSTILDEKLYLGSFIGSMLIICGLYAVLWGKSKEMKKNQSVPPESIHKSDTVEIMVKSRVEDKSNNKSNTLVNSVNATADNKDSWENRCENNVTHIHCCKEREEEVTSQNGSRT*

>Glyma15g05530.2   sequence type=predicted peptide   gene model=Glyma15g05530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDMCNVVHALKPVMLMVLVQVANAWVNVLYKLALNDGMNLSVIVAYRYVFATAFIAPLAFILERKTRTKMTWRILFQAFLCGLIGGVLPQNLNMEAIALTSVTFTTAISNLIPAITFIISLSFGLERLNLKTKGGKAKIIGTITGISGAMILTFIKGPEVKMLSFHVNLFNHQNGHVVHSHASSGLMTIFGALASVASNVSYAMWLIIQAKMSERYPCPYSSTALMSLMGALLSISFAFCVERDLSQWRLDWNVRLLTVAYAGIVVSGVMVAVISWCVRTRGPLFVSVFSPLMLVVVAFAGSTILDEKLYLGSFIGSMLIICGLYAVLWGKSKEMKKNQSVPPESIHKSDTVEIMVKSRVEDKSNNKSNTLVNSVNATADNKDSWENRCENNVTHIHCCKEREEEVTSQNGSRT*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain