Glyma15g05440 - SoyBase

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Report for Sequence Feature Glyma15g05440

Feature Type:	gene_model
Chromosome:	Gm15
Start:	3848143
stop:	3849787
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g05440

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G44080	AT	Annotation by Michelle Graham. TAIR10: Basic-leucine zipper (bZIP) transcription factor family protein \| chr5:17738787-17739734 REVERSE LENGTH=315	SoyBase	E_val: 1.00E-28	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009410	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to xenobiotic stimulus	SoyBase	N/A	ISS
GO:0030968	GO-bp	Annotation by Michelle Graham. GO Biological Process: endoplasmic reticulum unfolded protein response	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
GO:0046983	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein dimerization activity	SoyBase	N/A	ISS
PTHR22952	Panther	CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED	JGI		ISS
PTHR22952:SF58	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00170	PFAM	bZIP transcription factor	JGI		ISS
UniRef100_A4ZGU1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor bZIP10 n=1 Tax=Glycine max RepID=A4ZGU1_SOYBN	SoyBase	E_val: 3.00E-29	ISS
UniRef100_I1MDS2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MDS2_SOYBN	SoyBase	E_val: 8.00E-87	ISS

Expression Patterns of Glyma15g05440

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g05440

Paralog	Evidence	Comments
Glyma08g19590	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g05440 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g049000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g05440

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma15g05440

Limit To All Plant Sequences

>Glyma15g05440.2   sequence type=transcript   gene model=Glyma15g05440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CATGAATTTAATGAGAAAAGAAAAAAAAAAGTAGATGAATAAAATGAAAGTTTGAAGATAAAAAAATTGGTTGTGGTGTGGTTAGGGGAAGTGAAGAGGGTGATGATGTGGTGACTATAATAAGAGGAAGCAGTGAGTGAAATGAGAAGAAGACATGGCAGAGGTTGTGGCAGGCACAGAGTCTGAAGACAACATGAGCATGAGCCTCCAGGATTTGTTGGGCTCTCATAGTCATGGAGGAAGAAGGGTAAAGAGAAAGAGCGTAGTGGAAGAACCCCTCGTTGTCGATAAGGTCACTCTTCAGAAACAGAGAAGGATGATCAAAAACAGAGAATCTGCCGCTAGGTCCAGGGAACGCAAGCAGGCATACACAGTTGAGCTAGAATCTTTGGTTACACATCTGGAGGAAGAGAATGCCGTATTGTTACAACTAGCGGTATGTATGTATCTATCTATCTATGCCTTTTCCGTCTTGTCTTGTCTTTATAATATACTTTTTTCTCTTGTAGGCTGATAGGAAAAGGCTGAGGTTGAACCAGCTCATGGAGTGCCTTATTCCAGTTGAGGAGAAGCGTATACCAAAACGAATGCTTCGGAGAGTGAATTCATCCCAATGGTGATGTAATATGTTCCTTGTCCTAATGGAGTACAAGTTTTCAAGTCCTGGTGTATAGATACCAAACAAATGATGCATGAAATTGTTAAAGGATAATAAATATGAAAAAGAGAGGAAAAGATTTCCAAGGTTTTTTTATATACATATAACTTTGCTGATTATTTTCCAGGATATCACTTGGAGTTACATTGCTGTATAGAGAAATAATGCAGCTAAATAATTCAACTAATTTGATTCAAGCTGAAGCTTATTATTGGTTCACTAGGTGGAGGATAGGTCTATATTGGGGGAAGAGAGTTGAAATTAGAATGTATGTTAATGCTAGATTGTCTGCTTTTTGATATTTCAGGGAGGGAACTATGTGTAAGTATGATTAAGTGTTATATGTGTTATCTTCACTCCAATTTTTATTTTATTTTCTTTTTGTTGAATC

Coding sequences of Glyma15g05440

Limit To All Plant Sequences

>Glyma15g05440.1   sequence type=CDS   gene model=Glyma15g05440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGAGGTTGTGGCAGGCACAGAGTCTGAAGACAACATGAGCATGAGCCTCCAGGATTTGTTGGGCTCTCATAGTCATGGAGGAAGAAGGGTAAAGAGAAAGAGCGTAGTGGAAGAACCCCTCGTTGTCGATAAGGTCACTCTTCAGAAACAGAGAAGGATGATCAAAAACAGAGAATCTGCCGCTAGGTCCAGGGAACGCAAGCAGGCATACACAGTTGAGCTAGAATCTTTGGTTACACATCTGGAGGAAGAGAATGCCGTATTGTTACAACTAGCGGCTGATAGGAAAAGGCTGAGGTTGAACCAGCTCATGGAGTGCCTTATTCCAGTTGAGGAGAAGCGTATACCAAAACGAATGCTTCGGAGAGTGAATTCATCCCAATGGTGA

>Glyma15g05440.2   sequence type=CDS   gene model=Glyma15g05440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGAGGTTGTGGCAGGCACAGAGTCTGAAGACAACATGAGCATGAGCCTCCAGGATTTGTTGGGCTCTCATAGTCATGGAGGAAGAAGGGTAAAGAGAAAGAGCGTAGTGGAAGAACCCCTCGTTGTCGATAAGGTCACTCTTCAGAAACAGAGAAGGATGATCAAAAACAGAGAATCTGCCGCTAGGTCCAGGGAACGCAAGCAGGCATACACAGTTGAGCTAGAATCTTTGGTTACACATCTGGAGGAAGAGAATGCCGTATTGTTACAACTAGCGGTATGTATGTATCTATCTATCTATGCCTTTTCCGTCTTGTCTTGTCTTTATAATATACTTTTTTCTCTTGTAGGCTGA

Predicted protein sequences of Glyma15g05440

Limit To All Plant Sequences

>Glyma15g05440.1   sequence type=predicted peptide   gene model=Glyma15g05440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAEVVAGTESEDNMSMSLQDLLGSHSHGGRRVKRKSVVEEPLVVDKVTLQKQRRMIKNRESAARSRERKQAYTVELESLVTHLEEENAVLLQLAADRKRLRLNQLMECLIPVEEKRIPKRMLRRVNSSQW*

>Glyma15g05440.2   sequence type=predicted peptide   gene model=Glyma15g05440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAEVVAGTESEDNMSMSLQDLLGSHSHGGRRVKRKSVVEEPLVVDKVTLQKQRRMIKNRESAARSRERKQAYTVELESLVTHLEEENAVLLQLAVCMYLSIYAFSVLSCLYNILFSLVG*

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