Report for Sequence Feature Glyma15g05420
Feature Type: gene_model
Chromosome: Gm15
Start: 3834061
stop: 3837428
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma15g05420
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT2G01080 AT
Annotation by Michelle Graham. TAIR10: Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family | chr2:78038-79176 FORWARD LENGTH=231
SoyBase E_val: 4.00E-85 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005886 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
PF03168 PFAM
Late embryogenesis abundant protein
JGI ISS
UniRef100_Q9SJV8 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=1 Tax=Arabidopsis thaliana RepID=Q9SJV8_ARATH
SoyBase E_val: 2.00E-82 ISS
UniRef100_UPI000233B477 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233B477 related cluster n=1 Tax=unknown RepID=UPI000233B477
SoyBase E_val: 0 ISS
Expression Patterns of Glyma15g05420
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma15g05420
Paralog Evidence Comments
Glyma08g19630 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma15g05420 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.15g048800 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma15g05420
Coding sequences of Glyma15g05420
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma15g05420.2 sequence type=CDS gene model=Glyma15g05420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGACCACCCCAAGAGGAAACCACCACCCGCAGCCTAACGGTGAGCGAAGAAGACAATGGCCACCGGCACATCCAGCAGCGGCAGCGGCAGCGGCTCCGGAAGCGGCAGAGACAGCGACAGCAACAGCAGCAGGCGGACATTCTTACAATGGGTACCGACAGTACCACCCAAGAACGCCGGGTCGTTCGTCGTCGTCGTCGGCATCGTTCAAAGGGTGCTGTTGCTGCCTCTTCCTTCTATTCTCGTTCCTGGCGCTGCTGGTGCTAGCGGTGGTGCTGGTAATAATCCTAGCGGTGAAGCCGAAGAAGCCACAGTTCGATCTGGAGCAAGTGGGGGTGCAGTACATGGGCATCACACCCAATCCCCCCTCCACCGCTTCCCTCTCCCTCACTATTCGCCTCCTCTTCGCCGCCACCAACCCCAACAAGGTCGGGATCAGGTACGGCCAGTCCAGCTTCACCGTCATGTACCGCGGCATCCCATTGGGAAAAGCCACCGTCCCCGGCTTCTTCCAACAGCCTCACAGCACCCGACAGGTCATCGCCACCATCGCCGTCGATCGCGTCAATTTGCTTCAGGCCGACGCCGCCGATTTGATCCGAGACGCCTCCCTCAGCGACCGAGTCGACCTCAGAGTCTTGGGCGACGTTGCTGCCAAGATCCGCGTCATCAACTTCGATTCTCCAGGTGTTCAGGTCTCGGTGGATTGTGCTATTGTGATCAGTCCAAGAAAGCAATCTCTGACTTACAAGCAGTGTGGGTTCGATGGATTGACTGTTTGA
Predicted protein sequences of Glyma15g05420
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma15g05420.2 sequence type=predicted peptide gene model=Glyma15g05420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MTTPRGNHHPQPNGERRRQWPPAHPAAAAAAAPEAAETATATAAGGHSYNGYRQYHPRTPGRSSSSSASFKGCCCCLFLLFSFLALLVLAVVLVIILAVKPKKPQFDLEQVGVQYMGITPNPPSTASLSLTIRLLFAATNPNKVGIRYGQSSFTVMYRGIPLGKATVPGFFQQPHSTRQVIATIAVDRVNLLQADAADLIRDASLSDRVDLRVLGDVAAKIRVINFDSPGVQVSVDCAIVISPRKQSLTYKQCGFDGLTV*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
