Report for Sequence Feature Glyma15g05380
Feature Type: gene_model
Chromosome: Gm15
Start: 3804453
stop: 3808639
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma15g05380
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G23570 AT
Annotation by Michelle Graham. TAIR10: XS domain-containing protein / XS zinc finger domain-containing protein-related | chr5:7943621-7945874 FORWARD LENGTH=625
SoyBase E_val: 2.00E-121 ISS
GO:0009616 GO-bp
Annotation by Michelle Graham. GO Biological Process: virus induced gene silencing
SoyBase N/A ISS
GO:0010025 GO-bp
Annotation by Michelle Graham. GO Biological Process: wax biosynthetic process
SoyBase N/A ISS
GO:0010050 GO-bp
Annotation by Michelle Graham. GO Biological Process: vegetative phase change
SoyBase N/A ISS
GO:0010267 GO-bp
Annotation by Michelle Graham. GO Biological Process: production of ta-siRNAs involved in RNA interference
SoyBase N/A ISS
GO:0035196 GO-bp
Annotation by Michelle Graham. GO Biological Process: production of miRNAs involved in gene silencing by miRNA
SoyBase N/A ISS
GO:0051607 GO-bp
Annotation by Michelle Graham. GO Biological Process: defense response to virus
SoyBase N/A ISS
GO:0005737 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm
SoyBase N/A ISS
GO:0005783 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum
SoyBase N/A ISS
GO:0005829 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytosol
SoyBase N/A ISS
PTHR21596 Panther
RIBONUCLEASE P PROTEIN SUBUNIT P38-RELATED
JGI ISS
PTHR21596:SF1 Panther
TRANSCRIPTION FACTOR X1-LIKE
JGI ISS
PF03468 PFAM
XS domain
JGI ISS
PF03470 PFAM
XS zinc finger domain
JGI ISS
UniRef100_G7IK02 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Protein SUPPRESSOR OF GENE SILENCING-like protein n=1 Tax=Medicago truncatula RepID=G7IK02_MEDTR
SoyBase E_val: 0 ISS
UniRef100_UPI000233B474 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233B474 related cluster n=1 Tax=unknown RepID=UPI000233B474
SoyBase E_val: 0 ISS
Expression Patterns of Glyma15g05380
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma15g05380
Paralog Evidence Comments
Glyma08g19690 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma15g05380 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.15g048400 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma15g05380
Coding sequences of Glyma15g05380
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma15g05380.2 sequence type=CDS gene model=Glyma15g05380 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCTGATGATGGTGCTGATCCATTTCCAGTGTTGACAAGTGTGTATAGAGTATCTGGTTCCAAAAACAGTCAGCTGGGCTGGAATGTAGCCAATTCTCAGCAAACTGTTGACTCCAGTGTAAACAACTCAAGGCAGTTACAGAGCATTTCTGATGGCAGTGCTCCAAGACCCTGGTTTTCTCAAAATTTTAGACCAAATGCATGGGAAGTTCCAGGTGTGATTCAGAAGCTGAGGCCGGCAAAGCGGGGTAATGACGGATTGGCTTTGACGGGAAGTGGAATTTTGAACGACAAGTTGCCTCCTGAGTCAGTAATATCTCCAACATCAGAGACAGAGAGAGGGACAGGGTTAAATTCATCTGTTGGAGTCGTTACAACTACATCCAAGGATTGTGAAAATGTTGAATGCAAGGACAAGGATAAGAGAATCCCAGAACCCCAATGTGAAAACAACAATGATCAGATTGTTGACAATGGATCTGATATTGTTTTTGATAGTGATGATGATTGTTTTTTAGATGACATTGACTCAGATACTGGAGAGAGAAGCCATGAACAGTGCAAAAAGAGCAAGTGGCTCAGGAATTTCTTTGATAAATTAAATGCACTCACCAATGAGGAGATAAGTTCATTAGACAGGCAGTGGCATTGCCCAGCATGCCAAGGGGGTTCTGGTGCTATTGATTGGTACAAAGGGCTGCATCCCCTTTTGGATCATTCCAGAACAATACAAACAAAGAGGGCAAGACTGCACCGGATGTTTGCTGAAACTTTGGAGGAAGAGTGTTTCAGGAGAAGAGCTCCATTAACAACAGTCAGTGACGTCCATGATATATGGGAGGGTCTTGATAAGAAAGTCAAGGATCATGAAATAGTTTGGCCCCCAATGGTTATCATCATGAATACAAGATACGAGCAGGACGAAAGTAACAAGTGGAATGGAATGGGGAACCAAGGACTCCTTGATTGCTTCTGTGACTATGCAGCATTGAAGGCTCGACACTCGTATGGTCCACAAGGGCACCGAGGGATGAGTGCCTTAATTTTTGAGGAATCCACGGCAGGTTATCTAGAAGCTGTGCGGCTCCACAAGCATTTTAAAGAGCAAGGAAGAGATAGGGAGGCTTGGGATTGCTATCGGAATCCATTTCTCCCAGGTGGGAAGCGCCAACTTTATGGTTACTTGGCTTCTAAAGAAGATTTAGATATTTTCAACAAGCACTCTAGAGGAAAGACAAAATTGAAGTTTGAAATGAGATCATATCAAGAGATGGTTGAGAGCAAGATAAAACATATTAATGATGATAGTCGGAAGCTTGACTATTATAAGAGCATGGTAGCCAAAGAACAAATCAAATCACAAGTAGGTGCAGACTCTTTATTGAGATTAAGTGAGAAGTTAAGCTTGACAACCGAAGAAAACCGTGTTGATCAACAAAATAAGGAGATGGATGCACTAGAAAAAAATTTCCAGAGCCAAATCCTAGACATTCAACAAGCCATAGCTGCAAAGGAAGATAAGTTTGTGAAATTACAGCAGGCAATGCAAGAAAAAGTGAAAGAGTCCTGCGGAGAATCTTCTGAGAAAGAGGACAAGGTAGAAAATATCTCTTGTTTCCTGAAGCCCCAAGACAAGGAGATGAAGCAGTTTGAGGCAGAGAGAGAGAAAATCATAAAAATTCATGAAGAGAAAAGGTTGGCTCTGAAGAAGAAGCATTGGCAAGAGCAGGTTGAACTTGAGAAGGAGTTAGAGAATGAACGGACGCAGCTCATGGACAAGTACACTTGCAACCAGACTCAAGAAGAAAACTGTTATGTGGATCATTAA
Predicted protein sequences of Glyma15g05380
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma15g05380.2 sequence type=predicted peptide gene model=Glyma15g05380 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MADDGADPFPVLTSVYRVSGSKNSQLGWNVANSQQTVDSSVNNSRQLQSISDGSAPRPWFSQNFRPNAWEVPGVIQKLRPAKRGNDGLALTGSGILNDKLPPESVISPTSETERGTGLNSSVGVVTTTSKDCENVECKDKDKRIPEPQCENNNDQIVDNGSDIVFDSDDDCFLDDIDSDTGERSHEQCKKSKWLRNFFDKLNALTNEEISSLDRQWHCPACQGGSGAIDWYKGLHPLLDHSRTIQTKRARLHRMFAETLEEECFRRRAPLTTVSDVHDIWEGLDKKVKDHEIVWPPMVIIMNTRYEQDESNKWNGMGNQGLLDCFCDYAALKARHSYGPQGHRGMSALIFEESTAGYLEAVRLHKHFKEQGRDREAWDCYRNPFLPGGKRQLYGYLASKEDLDIFNKHSRGKTKLKFEMRSYQEMVESKIKHINDDSRKLDYYKSMVAKEQIKSQVGADSLLRLSEKLSLTTEENRVDQQNKEMDALEKNFQSQILDIQQAIAAKEDKFVKLQQAMQEKVKESCGESSEKEDKVENISCFLKPQDKEMKQFEAEREKIIKIHEEKRLALKKKHWQEQVELEKELENERTQLMDKYTCNQTQEENCYVDH*