Glyma15g05370 - SoyBase

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Report for Sequence Feature Glyma15g05370

Feature Type:	gene_model
Chromosome:	Gm15
Start:	3797980
stop:	3801854
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g05370

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G01070	AT	Annotation by Michelle Graham. TAIR10: Lung seven transmembrane receptor family protein \| chr2:75596-77625 FORWARD LENGTH=496	SoyBase	E_val: 0	ISS
GO:0006084	GO-bp	Annotation by Michelle Graham. GO Biological Process: acetyl-CoA metabolic process	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0016126	GO-bp	Annotation by Michelle Graham. GO Biological Process: sterol biosynthetic process	SoyBase	N/A	ISS
GO:0016132	GO-bp	Annotation by Michelle Graham. GO Biological Process: brassinosteroid biosynthetic process	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG2568	KOG	Predicted membrane protein	JGI		ISS
PTHR21229	Panther	LUNG SEVEN TRANSMEMBRANE RECEPTOR	JGI		ISS
PTHR21229:SF1	Panther	PTM1	JGI		ISS
PF06814	PFAM	Lung seven transmembrane receptor	JGI		ISS
UniRef100_A2Q492	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Lung seven transmembrane receptor n=1 Tax=Medicago truncatula RepID=A2Q492_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1MDR1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MDR1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g05370

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g05370

Paralog	Evidence	Comments
Glyma08g19670	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g05370 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g048300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g05370

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g05370

Limit To All Plant Sequences

>Glyma15g05370.1   sequence type=CDS   gene model=Glyma15g05370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTCAGCATTTGCGAGAACGAGATCCATGTTCTTCGCAGCTTCACTCCTCCTCTACATATTCGCAGTCACCACCACCACCTTCGCATCCATCCACATCTACGATCATGAACCTTTCAGAGAACTCGGCAATTCCTACCTCCTCGCTGGCGGCAGCGAAGGCATCGTCACTTCCCAACCCTATTCCGTCCACGATGATGGCCGTTCCTACATCCGATTTGAGAATATAACCTTCCGGAGAACCAAAGCTTCAGCCAAGGCACGCGGTTCTGTGCCAGTACACATCATAATTTTTGAGGCTGCTGATCGTAATGATATAGGTGGTTCTGCTTATGGTGGACAACGGGCAATCTGTTGCACTCCTGATTTAGCCAAGATGGGAGTTTGTAAGCAAGGAGAGATTATTAGGAGACCTTCTGCAACAGACATTAATTGGCCAGTCATTTTAGATGTACAATTCAAAGGCAGATCCAAAACTGCAAGTCTAGATTCTCAGAAAGTTTTTATCACAAAGACTGGAATGTATAATTTGTTTTTTGTAGCTTGTGAACCCAAGCTCAAGGACATGGTAATGAGTGGAAAGACAGTATGGAAAAACCCTGATGGGTATTTACCTGGTAGGATGGCCCCATTAAAGAAGTTCTATGTATTTATGACACTGGCTTATGTTTGCCTTAGCATCATTTGGTTTTTTCAGTATGTGAGATTTTGGGATGATGTACTGCAACTTCAGCACTGTATCACAGCTGTCATTGCTCTTGGATTGTTTGAGATGATTCTCTGGTATTTTGAGTATGTCAATTTCAACAATACTGGAATGAGACCTATTGTGCTCACAATATGGGTCGTCACTGTTGGGGCTATAAGAAAATCAATATCACGACTTCTCATTCTCTCTGTCTCAATGGGTTATGGTGTTGTGCGACCCACTCTGGGTGGTCTTACATCAAAGGTTCTTTTACTTGGAATAACTTACTTTCTAGCATCGGAGTTACTGAATATTACTGAATATGTGGGGACCATCAATGATGTGTCAGGAAGGGCAAGGCTTCTTCTAGTTCTTCCTGATGCTTTCTTAGATGCATTTTTGATATTATGGATTTTTACATCTCTTTCAAGAACACTGGAGCAGTTACAGGCAAAACGAAGTTCTGTCAAGTTGGATATATATAGGAAGTTCTCAAATGCATTAGCAGTAACTGTGATCTCCTCAGTTGCTTGGATTGGATATGAGGTATACTTCAAGGCTACAGATCCTTTCAATGAGCGCTGGCAAAGTGCTTGGATCATCACTGCATTCTGGGACATTCTAGCATTTGCATTACTCTGTGTTATATGCTATCTCTGGGCCCCATCCCAAAGCTCTCAAAGGTATGCATATTCGGAGGAAGTGGGAGAAGATTCTGATGACGAAGAAGCTCAATCTCTCACTAAGGGAAAGCAGGAAGGTCAGGGTGAACTAAGTTTAGTTCGGCAAGAGAAGAATGGTGGAACTGATGGATCCTTTGATCAAGAAGACGAGTCAGAAGAGGAAGATAAAAGGGAATGA

Predicted protein sequences of Glyma15g05370

Limit To All Plant Sequences

>Glyma15g05370.1   sequence type=predicted peptide   gene model=Glyma15g05370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDSAFARTRSMFFAASLLLYIFAVTTTTFASIHIYDHEPFRELGNSYLLAGGSEGIVTSQPYSVHDDGRSYIRFENITFRRTKASAKARGSVPVHIIIFEAADRNDIGGSAYGGQRAICCTPDLAKMGVCKQGEIIRRPSATDINWPVILDVQFKGRSKTASLDSQKVFITKTGMYNLFFVACEPKLKDMVMSGKTVWKNPDGYLPGRMAPLKKFYVFMTLAYVCLSIIWFFQYVRFWDDVLQLQHCITAVIALGLFEMILWYFEYVNFNNTGMRPIVLTIWVVTVGAIRKSISRLLILSVSMGYGVVRPTLGGLTSKVLLLGITYFLASELLNITEYVGTINDVSGRARLLLVLPDAFLDAFLILWIFTSLSRTLEQLQAKRSSVKLDIYRKFSNALAVTVISSVAWIGYEVYFKATDPFNERWQSAWIITAFWDILAFALLCVICYLWAPSQSSQRYAYSEEVGEDSDDEEAQSLTKGKQEGQGELSLVRQEKNGGTDGSFDQEDESEEEDKRE*

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