Glyma15g05360 - SoyBase

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Report for Sequence Feature Glyma15g05360

Feature Type:	gene_model
Chromosome:	Gm15
Start:	3794870
stop:	3797375
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g05360

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G25260	AT	Annotation by Michelle Graham. TAIR10: Ribosomal protein L10 family protein \| chr1:8854163-8855766 REVERSE LENGTH=235	SoyBase	E_val: 2.00E-118	ISS
GO:0001510	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA methylation	SoyBase	N/A	ISS
GO:0006412	GO-bp	Annotation by Michelle Graham. GO Biological Process: translation	SoyBase	N/A	ISS
GO:0042254	GO-bp	Annotation by Michelle Graham. GO Biological Process: ribosome biogenesis	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0005840	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: ribosome	SoyBase	N/A	ISS
GO:0022626	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosolic ribosome	SoyBase	N/A	ISS
GO:0003735	GO-mf	Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome	SoyBase	N/A	ISS
KOG0816	KOG	Protein involved in mRNA turnover	JGI		ISS
PTHR21141	Panther	60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER	JGI		ISS
PTHR21141:SF1	Panther	MRNA TURNOVER PROTEIN 4 MRT4	JGI		ISS
PF00466	PFAM	Ribosomal protein L10	JGI		ISS
UniRef100_A2Q489	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ribosomal protein L10 n=1 Tax=Medicago truncatula RepID=A2Q489_MEDTR	SoyBase	E_val: 1.00E-139	ISS
UniRef100_I1MDQ9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MDQ9_SOYBN	SoyBase	E_val: 6.00E-167	ISS

Expression Patterns of Glyma15g05360

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g05360

Paralog	Evidence	Comments
Glyma08g19660	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g05360 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g048200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g05360

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma15g05360

Limit To All Plant Sequences

>Glyma15g05360.2   sequence type=transcript   gene model=Glyma15g05360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAATTGGCAAAAAACCCATCTTAAATACGCAGAGCCCAACCCGAATAGAGGAGGTAAATAAACGGAGTCTCTAATCACAAACCTAAAACCCTACAGGCAGCGAGCCAGAGAAGTTGCAACTGCGAACAGAACAAGTTCATAATGCCAAAGTCAAAGAGAAATAGACAAGTTACGCTGTCAAAGACGAAGAAAAAGGGAAGAGACCACAAAGAGACGATAGTGAACGGAATAAAAGATGCGGCAGAAAAGTACGGGTGCGTGTACGTGTTCTCCTTCGAGAATATGAGGAATCAGAAATTAAAGGAGTTCAGGGAACAGTTGAAATCGAATAGCAGGTTCTTTCTGGGTTCTAACAAAGTAATGCAAGTTGCTTTAGGTCGCTCCGCTTCAGATGAGATCAGACCTGGCCTTCACAAGGTTTCAAAGCTATTGCGTGGAGATTCTGGGATGTTTTTCACCAATTTGTCTAAGGAAGAAGTTGAAAGGCTGTTTAAAGAATTTGAGGAATATGACTTTGCAAGAACAGGAAGCATTGCCACTGAAAAGGTAATTGGAGTTAGTTCTTATGATTATGATTTTTTCATACAACATGGGATGGTTTTGGGCCTCTGGGGGGAGCTGCAAAACAGCCATAGAAACTTCTAATCTCTAATTTTGATTATTTTCATTTATATTGATGCCTGGTTTGTTTATAAAACCATATTTCTCTTCTACATCAATAGGAATCATTTGCCAGTCATATCCATTAGATCCTCAATTCAATTTTAATCTATAAATGAAACTCACACTTTCATAATGAGTGTTATAGGTGGATCTCAAAGAGGGTCCTTTAGAGCAATTCACTCATGAGATGGAACCCTTTCTCAGGAAGCAAGGCATGCCTGTTCGGTTAAATAAAGGAGTTGTGGAGCTTGTTTCGGATTTTGTTGTTTGCGACGAAGGAAAGCCTTTGTCACCAGAGGCTGCTCGTATACTGCGTTTAATGGGAATCAAGATGGCTACATTTCGACTTAACTTAATTTGCAGATGGAGTCCCGATGAGTTTGAACTTTACATTGATGGGCCTGATGAATCAGATATTGAATGCTCGTAGGACCTCTTTTAAAATGTAGAAGATTATGGAGCGCCCTCCTCCAAAAAAAAAAAATATTACAAGATATGACGCATATGTAATTTACATCTACAGTGATATTTACTGTAGCGTTTTTTGGATTATGAATTCTTAGAAGAGTTAATTTGTGGGAATGCGAGAGATTTCTGTCAACTAGGCCGAGCTGTAACTTTATGAAAAATTCAAATTACTGAGATACAATTTTGATTGGCTTAGATTTTTTTTGCTGCTGATATATATAATTTCTATCAATTTGGAAGAGTAGAGTCTAAGACTAAGTATCCCTTGAAAGGGAATTCGATCCCTTTTAAGCTTACTATCTGGTAC

Coding sequences of Glyma15g05360

Limit To All Plant Sequences

>Glyma15g05360.1   sequence type=CDS   gene model=Glyma15g05360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCAAAGTCAAAGAGAAATAGACAAGTTACGCTGTCAAAGACGAAGAAAAAGGGAAGAGACCACAAAGAGACGATAGTGAACGGAATAAAAGATGCGGCAGAAAAGTACGGGTGCGTGTACGTGTTCTCCTTCGAGAATATGAGGAATCAGAAATTAAAGGAGTTCAGGGAACAGTTGAAATCGAATAGCAGGTTCTTTCTGGGTTCTAACAAAGTAATGCAAGTTGCTTTAGGTCGCTCCGCTTCAGATGAGATCAGACCTGGCCTTCACAAGGTTTCAAAGCTATTGCGTGGAGATTCTGGGATGTTTTTCACCAATTTGTCTAAGGAAGAAGTTGAAAGGCTGTTTAAAGAATTTGAGGAATATGACTTTGCAAGAACAGGAAGCATTGCCACTGAAAAGGTGGATCTCAAAGAGGGTCCTTTAGAGCAATTCACTCATGAGATGGAACCCTTTCTCAGGAAGCAAGGCATGCCTGTTCGGTTAAATAAAGGAGTTGTGGAGCTTGTTTCGGATTTTGTTGTTTGCGACGAAGGAAAGCCTTTGTCACCAGAGGCTGCTCGTATACTGCGTTTAATGGGAATCAAGATGGCTACATTTCGACTTAACTTAATTTGCAGATGGAGTCCCGATGAGTTTGAACTTTACATTGATGGGCCTGATGAATCAGATATTGAATGCTCGTAG

>Glyma15g05360.2   sequence type=CDS   gene model=Glyma15g05360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCAAAGTCAAAGAGAAATAGACAAGTTACGCTGTCAAAGACGAAGAAAAAGGGAAGAGACCACAAAGAGACGATAGTGAACGGAATAAAAGATGCGGCAGAAAAGTACGGGTGCGTGTACGTGTTCTCCTTCGAGAATATGAGGAATCAGAAATTAAAGGAGTTCAGGGAACAGTTGAAATCGAATAGCAGGTTCTTTCTGGGTTCTAACAAAGTAATGCAAGTTGCTTTAGGTCGCTCCGCTTCAGATGAGATCAGACCTGGCCTTCACAAGGTTTCAAAGCTATTGCGTGGAGATTCTGGGATGTTTTTCACCAATTTGTCTAAGGAAGAAGTTGAAAGGCTGTTTAAAGAATTTGAGGAATATGACTTTGCAAGAACAGGAAGCATTGCCACTGAAAAGGTAATTGGAGTTAGTTCTTATGATTATGATTTTTTCATACAACATGGGATGGTTTTGGGCCTCTGGGGGGAGCTGCAAAACAGCCATAGAAACTTCTAA

Predicted protein sequences of Glyma15g05360

Limit To All Plant Sequences

>Glyma15g05360.1   sequence type=predicted peptide   gene model=Glyma15g05360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPKSKRNRQVTLSKTKKKGRDHKETIVNGIKDAAEKYGCVYVFSFENMRNQKLKEFREQLKSNSRFFLGSNKVMQVALGRSASDEIRPGLHKVSKLLRGDSGMFFTNLSKEEVERLFKEFEEYDFARTGSIATEKVDLKEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCDEGKPLSPEAARILRLMGIKMATFRLNLICRWSPDEFELYIDGPDESDIECS*

>Glyma15g05360.2   sequence type=predicted peptide   gene model=Glyma15g05360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPKSKRNRQVTLSKTKKKGRDHKETIVNGIKDAAEKYGCVYVFSFENMRNQKLKEFREQLKSNSRFFLGSNKVMQVALGRSASDEIRPGLHKVSKLLRGDSGMFFTNLSKEEVERLFKEFEEYDFARTGSIATEKVIGVSSYDYDFFIQHGMVLGLWGELQNSHRNF*

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