Glyma15g05330 - SoyBase

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Report for Sequence Feature Glyma15g05330

Feature Type:	gene_model
Chromosome:	Gm15
Start:	3772995
stop:	3776621
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g05330

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G54630	AT	Annotation by Michelle Graham. TAIR10: CONTAINS InterPro DOMAIN/s: Kinetochore protein Ndc80 (InterPro:IPR005550); Has 24780 Blast hits to 15608 proteins in 1321 species: Archae - 545; Bacteria - 2969; Metazoa - 12597; Fungi - 2181; Plants - 1581; Viruses - 39; Other Eukaryotes - 4868 (source: NCBI BLink). \| chr3:20221195-20222901 REVERSE LENGTH=568	SoyBase	E_val: 5.00E-163	ISS
GO:0000911	GO-bp	Annotation by Michelle Graham. GO Biological Process: cytokinesis by cell plate formation	SoyBase	N/A	ISS
GO:0006260	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA replication	SoyBase	N/A	ISS
GO:0006306	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA methylation	SoyBase	N/A	ISS
GO:0007129	GO-bp	Annotation by Michelle Graham. GO Biological Process: synapsis	SoyBase	N/A	ISS
GO:0007131	GO-bp	Annotation by Michelle Graham. GO Biological Process: reciprocal meiotic recombination	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0008283	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell proliferation	SoyBase	N/A	ISS
GO:0010564	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of cell cycle process	SoyBase	N/A	ISS
GO:0048451	GO-bp	Annotation by Michelle Graham. GO Biological Process: petal formation	SoyBase	N/A	ISS
GO:0048453	GO-bp	Annotation by Michelle Graham. GO Biological Process: sepal formation	SoyBase	N/A	ISS
GO:0051322	GO-bp	Annotation by Michelle Graham. GO Biological Process: anaphase	SoyBase	N/A	ISS
GO:0051567	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone H3-K9 methylation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG0995	KOG	Centromere-associated protein HEC1	JGI		ISS
PTHR10643	Panther	HEC1 PROTEIN	JGI		ISS
PF03801	PFAM	HEC/Ndc80p family	JGI		ISS
UniRef100_G7IFT2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Kinetochore protein NDC80-like protein n=2 Tax=Medicago truncatula RepID=G7IFT2_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1MDQ7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MDQ7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g05330

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g05330 not represented in the dataset	Glyma15g05330 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma15g05330 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g048000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g05330

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g05330

Limit To All Plant Sequences

>Glyma15g05330.1   sequence type=CDS   gene model=Glyma15g05330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGACCCACCGCGCGTCGGCAAGCGAAGGACTCCTTCATTCCCCCGGCGCCGCCCACTCCGCTGGACTTCCACCACCGCCAGTACTCCTCCCGCGACTCCGACGTCAGCAGCCGCCCCTCCTCCGTCGGCATCGGCAGACGCCCCACCCTAGACCTCTACAATGAGCCTTCCTACAAGCAAACGGTGGTTTCCACCATCAACTCCTTCCTCTCCTCCCACAACTTCCCAATCACCTTCAAAACGACGCTCCCCTCTGCCAAAGACATCCACGAAACCCTAAAATTTCTCCTCTCTCTCCTCGACTTCCCTTTCTCCAAACTCGAAGAGGATCTCCCTCCCCTCCTCAAACGCCTCAATTATCCTTTTAAACTCAACAAATCCATTCTCCGTTCCCCAGCCGCGCCTCACCAATGGCCTACCTTCCTCGCTCTCATCCACTGGCTCGTCCAGATCGCCAAATTCCACCTCCACCTCTCTTCTTCCCCCAAACAGCACAACTCCCTCTACCAATACACCGTCAACAGCTACATGCACTTCATCCACAACGAGGACGACGCCGTTGAGGACCTCGACCGCAGCATCAAGGATAAGCTCCACCACGAGAAGGCCGCCGCCGAGGAACGCCTCCAGGCCACGCGCCGCAGCGCCGCCGAGCTCGAGGCGGAGCTCGAGCGGCTCCGGTCCGCGCCCTCACTGAAGGAGGCGCTGGAGAAGGAGAAAGCAATGCTGGAGGACGACGTGAAGAAGTTCCACAAGATGATCGAGGAGTTATCCCTGCGGATCGAGCAGGCGGAGAGGGTTCTGGCGGAGAAAGAGAAGCAGGTGGAGGCGAAGCAAGCGGAGAACGAGAAGATCTGCGAGGAGAATGAGGAGCTGAAGCGTCGCGTGGAGGCGCAGAGCTTCAACGCGAGGGACGTGGAGAGGATGAAGAGGGAGTTGCAGGCGGTGGAGAGGGACACTGCGGAGGCTGAACTTGCAAGGAATGCGTTGGAGGAGCAGGCGTGGGATCTCGACACCACTCTCTCACACAAAATCAAAGACCTCGAGGCTCTCGGCATGGAGTGCAACCAAGCCCTTAAGAGGTTGAAGATTGGTAATGGAATTCAATATCTGCTGAATGCCAAGGGTACTACTCCTGCTGAGATAATGGGAATCGATCACAAACTTGTGCTGAAGCCTGCACTTAGATCCTTTTCTGATGAAATCAAGAAAAGTTCTATGGAAAAACTGGAGGAGTCCATTTCTTATCAGCAGAAGTCTGGTGAAAATGCTGTTAGGCTTGAGGGGAAAAGAAATCAGCTTGCGGCAGTGCAATCACGTATTGATGAAATGGAAGCTCAACTGAACAGGATAAAGAAGGAAACACATGAATACACAAGTAGAGCTTCTGCTGAAGCTAAGAAAATGTTGGAGGATGTCCAGCTGGCAGATCATGAAATTGACATTATGGAAAGAGAGGCAGCTGAGGTTCTCAAGACATCCGAATTGAAGTTGCAGGAAGTGATTAAACAAAGTGAAGAAGAAATTCAAATGCATGCCAGGGAACTCTTTCAGCTGGTTGATTCCGTCTCAAAATTCAAAGAACATGTGGGTTCCAAAATTTCAGAGATTGGGAGGGATCTATCTGAAACTGCCGCTGCTGTCTCAGATACATATAGGGGAGCTTGTGTAGATATAGATATTGAGAGGAAAAAAATGAGAGAGAGAAAATAA

Predicted protein sequences of Glyma15g05330

Limit To All Plant Sequences

>Glyma15g05330.1   sequence type=predicted peptide   gene model=Glyma15g05330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRPTARRQAKDSFIPPAPPTPLDFHHRQYSSRDSDVSSRPSSVGIGRRPTLDLYNEPSYKQTVVSTINSFLSSHNFPITFKTTLPSAKDIHETLKFLLSLLDFPFSKLEEDLPPLLKRLNYPFKLNKSILRSPAAPHQWPTFLALIHWLVQIAKFHLHLSSSPKQHNSLYQYTVNSYMHFIHNEDDAVEDLDRSIKDKLHHEKAAAEERLQATRRSAAELEAELERLRSAPSLKEALEKEKAMLEDDVKKFHKMIEELSLRIEQAERVLAEKEKQVEAKQAENEKICEENEELKRRVEAQSFNARDVERMKRELQAVERDTAEAELARNALEEQAWDLDTTLSHKIKDLEALGMECNQALKRLKIGNGIQYLLNAKGTTPAEIMGIDHKLVLKPALRSFSDEIKKSSMEKLEESISYQQKSGENAVRLEGKRNQLAAVQSRIDEMEAQLNRIKKETHEYTSRASAEAKKMLEDVQLADHEIDIMEREAAEVLKTSELKLQEVIKQSEEEIQMHARELFQLVDSVSKFKEHVGSKISEIGRDLSETAAAVSDTYRGACVDIDIERKKMRERK*

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