Glyma15g05300 - SoyBase

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Report for Sequence Feature Glyma15g05300

Feature Type:	gene_model
Chromosome:	Gm15
Start:	3760026
stop:	3765550
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g05300

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G33270	AT	Annotation by Michelle Graham. TAIR10: Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein \| chr1:12068324-12070157 REVERSE LENGTH=369	SoyBase	E_val: 5.00E-172	ISS
GO:0006629	GO-bp	Annotation by Michelle Graham. GO Biological Process: lipid metabolic process	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
KOG3773	KOG	Adiponutrin and related vesicular transport proteins; predicted alpha/beta hydrolase	JGI		ISS
PTHR12406	Panther	CALCIUM-INDEPENDENT PHOSPHOLIPASE A2 (IPLA2)-RELATED	JGI		ISS
PTHR12406:SF1	Panther	GS2 - RELATED	JGI		ISS
PF01734	PFAM	Patatin-like phospholipase	JGI		ISS
UniRef100_A2Q497	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Patatin n=1 Tax=Medicago truncatula RepID=A2Q497_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1MDQ4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MDQ4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g05300

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g05300 not represented in the dataset	Glyma15g05300 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g05300

Paralog	Evidence	Comments
Glyma08g19720	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g05300 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g047800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g05300

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma15g05300

Limit To All Plant Sequences

>Glyma15g05300.3   sequence type=transcript   gene model=Glyma15g05300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GATTCAGAAGAAAGAGGAGTGTGAGTTGCGTGGTCAGGTCAGGGATGGGTCCCTGTATCTGCTCCTCCCATGCTCAGCGTCTCCCCTATGCAGCAAATCTAAACCCTAATTCTTCTATTCTCCGTCGACGCGCACAATTCATCAGCTTCGCCTCGAATTCTTCTCCACCTCAAGACGAGGAGGCCACTGCCAAGAAATCGTTTGCCGTGGCGACCGGCGAGCTGTTTCTAGGGCTGGCGACGCGCCTGATTAAGAGCCGAAACAAGGGAAGCAGCAGCCTCGCAGAAGATTCGGGTTCGGTGGGCATGTTTGAGAATAATTCTGAGGAGAGAATCGGAGCGGTGGTGGAGGACGAGATTGATCCCGACGTGGTTTGGGAGCAAAGAGTGAAAGACGTGGAGGCGGAGCGCAATAGGTATAGCCGCCTCGTCACCAGCCCTGGCTTTAGTTTCTCTGCCGCTGGACTTCTCTTCCCTTACCATCTTGGTGTCGCTCAATTTCTCATTCAAAATGGTTACATTAAGGAAACAACACCGTTAGCCGGTTCCTCAGCTGGAGCTATAGTTTGTGCTGTGATTGCTTCCGGAGCTAGTATGGAAGAAGCCTTGAATGCTACTAAAATATTGGCTGAAGATTGCCGCAATCGGGGGACTGCATTCCGGCTTGGGGCTGTTCTACGTGATATTCTTGACAAGTTTTTGCCAGATGATGTTCATATAAGATCTAATGGGAGAGTTCGAGTTGCTGTGACACAGCTTCTTTGGAGACCCCGAGGTTTGTTGGTAGATCAGTTTGATTCCAAGGAAGATCTCATCAATGCAGTTTTTACCTCTTCCTTTATTCCAGGATATCTTGCACCAAGGCCAGCAACGATGTTTCGGAATCGACTATGCATTGATGGGGGTTTGACATTGTTTATGCCACCGACATCTGCTGCACAAACGGTCCATCTTTGGTGTTTAGAGTCCAAGGCATTCCGATTCCAAAATTTCAACTTTCAAACCATTTGCAATCAAACCAATTAAACCCACCAGTGAATTATAAATGGTGTGCATCTTTCTTTCTCCCATCAAAACACTTCATATCACAAGCTCATGTACCAGCGAATTAAAGGATTAAACCCCTTCCTTGTCCGACTATTGCCGAGCAATTTTTGGATATCAAACGGACTTCCTCAGAAGGTTCGTGTTTGTGCTTTTCCAGCAAGTCGATTGGGATTGCAAGGGATAGGAATTAGTCCAGACTGCAATCCTGAAAACGTGTGTAGCCCACGACAGCTTTTCAACTGGGCACTTGAACCAGCCGAAGATGCAATTCTTGACCGATTCTTTGAGCTTGGATATCTAGATGCTTCTGTCTGGGCAAAGGAAAACCCAGTTGAAGTAATAGTTCAAGATGATAGTCCTGCGTTTGGAAGTAGCAGTGCGACATAGATTGATGATATAATGAACTACGTAAAGATAGTTCATTATGCAGATTGAAGATGCATGAGGAAACTACAGACCATTGAATCAACGATGTTTCCTTGAAATGGAGCATCAAATTAGGAAAAATTCACGGGGAGAAGTCCATAATTAATCTCGTTTATTCATATTTATTGTACATTGCAATAGAATTAGAGGAAAGGAAAGAAAGAAAATAGTTGAGAGGTAATATATTTAAAATTTACTAGCCAGAAGGTTCATGTTGTTGGAAATTTATAGTGAATCATAAATAGAATTTATTGCTAGTTTCCCTGTGCATGACAAAGTTATGGTAATTTAGTTTCTCGAATGTGATGTTTTTGTGTTATTAAAGGTAGAGAGTTTCACCTGGTT

>Glyma15g05300.4   sequence type=transcript   gene model=Glyma15g05300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GATTCAGAAGAAAGAGGAGTGTGAGTTGCGTGGTCAGGTCAGGGATGGGTCCCTGTATCTGCTCCTCCCATGCTCAGCGTCTCCCCTATGCAGCAAATCTAAACCCTAATTCTTCTATTCTCCGTCGACGCGCACAATTCATCAGCTTCGCCTCGAATTCTTCTCCACCTCAAGACGAGGAGGCCACTGCCAAGAAATCGTTTGCCGTGGCGACCGGCGAGCTGTTTCTAGGGCTGGCGACGCGCCTGATTAAGAGCCGAAACAAGGGAAGCAGCAGCCTCGCAGAAGATTCGGGTTCGGTGGGCATGTTTGAGAATAATTCTGAGGAGAGAATCGGAGCGGTGGTGGAGGACGAGATTGATCCCGACGTGGTTTGGGAGCAAAGAGTGAAAGACGTGGAGGCGGAGCGCAATAGGTATAGCCGCCTCGTCACCAGCCCTGGCTTTAGTTTCTCTGCCGCTGGACTTCTCTTCCCTTACCATCTTGGTGTCGCTCAATTTCTCATTCAAAATGGTTACATTAAGGAAACAACACCGTTAGCCGGTTCCTCAGCTGGAGCTATAGTTTGTGCTGTGATTGCTTCCGGAGCTAGTATGGAAGAAGCCTTGAATGCTACTAAAATATTGGCTGAAGATTGCCGCAATCGGGGGACTGCATTCCGGCTTGGGGCTGTTCTACGTGATATTCTTGACAAGTTTTTGCCAGATGATGTTCATATAAGATCTAATGGGAGAGTTCGAGTTGCTGTGACACAGCTTCTTTGGAGACCCCGAGGTTTGTTGGTAGATCAGTTTGATTCCAAGGAAGATCTCATCAATGCAGTTTTTACCTCTTCCTTTATTCCAGGATATCTTGCACCAAGGCCAGCAACGATGTTTCGGAATCGACTATGCATTGATGGGGGTTTGACATTGTTTATGCCACCGACATCTGCTGCACAAACGGTCCATCTTTGGTGTTTAGAGTCCAAGGCATTCCGATTCCAAAATTTCAACTTTCAAACCATTTGCAATCAAACCAATTAAACCCACCAGTGAATTATAAATGGTGTGCATCTTTCTTTCTCCCATCAAAACACTTCATATCACAAGCTCATGTACCAGCGAATTAAAGGATTAAACCCCTTCCTTGTCCGACTATTGCCGAGCAATTTTTGGATATCAAACGGACTTCCTCAGAAGGTAATTTTAATGTGGCTGATTTCCCCTCTTTTACTAAGGGATGGACATCGAAAAAACACAATAATAGAAAATGATAATTTTCTTTCTGTTTTGAGCAACGAACAACACCAATTACAACAGGAAGGGGAGGAAGGAGAGAAAAAAAAAAAGCAGCGAACAAAGCTCTAGCTGTGTGCGTCACTGTCAAGCCACCCTCCATCGGTACAAGATTTCTCTCTGCCGTGTTCCGACATGTTCGTGTTTGTGCTTTTCCAGCAAGTCGATTGGGATTGCAAGGGATAGGAATTAGTCCAGACTGCAATCCTGAAAACGTGTGTAGCCCACGACAGCTTTTCAACTGGGCACTTGAACCAGCCGAAGATGCAATTCTTGACCGATTCTTTGAGCTTGGATATCTAGATGCTTCTGTCTGGGCAAAGGAAAACCCAGTTGAAGTAATAGTTCAAGATGATAGTCCTGCGTTTGGAAGTAGCAGTGCGACATAGATTGATGATATAATGAACTACGTAAAGATAGTTCATTATGCAGATTGAAGATGCATGAGGAAACTACAGACCATTGAATCAACGATGTTTCCTTGAAATGGAGCATCAAATTAGGAAAAATTCACGGGGAGAAGTCCATAATTAATCTCGTTTATTCATATTTATTGTACATTGCAATAGAATTAGAGGAAAGGAAAGAAAGAAAATAGTTGAGAGGTAATATATTTAAAATTTACTAGCCAGAAGGTTCATGTTGTTGGAAATTTATAGTGAATCATAAATAGAATTTATTGCTAGTTTCCCTGTGCATGACAAAGTTATGGTAATTTAGTTTCTCGAATGTGATGTTTTTGTGTTATTAAAGGTAGAGAGTTTCACCTGGTT

Coding sequences of Glyma15g05300

Limit To All Plant Sequences

>Glyma15g05300.1   sequence type=CDS   gene model=Glyma15g05300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTCCCTGTATCTGCTCCTCCCATGCTCAGCGTCTCCCCTATGCAGCAAATCTAAACCCTAATTCTTCTATTCTCCGTCGACGCGCACAATTCATCAGCTTCGCCTCGAATTCTTCTCCACCTCAAGACGAGGAGGCCACTGCCAAGAAATCGTTTGCCGTGGCGACCGGCGAGCTGTTTCTAGGGCTGGCGACGCGCCTGATTAAGAGCCGAAACAAGGGAAGCAGCAGCCTCGCAGAAGATTCGGGTTCGGTGGGCATGTTTGAGAATAATTCTGAGGAGAGAATCGGAGCGGTGGTGGAGGACGAGATTGATCCCGACGTGGTTTGGGAGCAAAGAGTGAAAGACGTGGAGGCGGAGCGCAATAGGTATAGCCGCCTCGTCACCAGCCCTGGCTTTAGTTTCTCTGCCGCTGGACTTCTCTTCCCTTACCATCTTGGTGTCGCTCAATTTCTCATTCAAAATGGTTACATTAAGGAAACAACACCGTTAGCCGGTTCCTCAGCTGGAGCTATAGTTTGTGCTGTGATTGCTTCCGGAGCTAGTATGGAAGAAGCCTTGAATGCTACTAAAATATTGGCTGAAGATTGCCGCAATCGGGGGACTGCATTCCGGCTTGGGGCTGTTCTACGTGATATTCTTGACAAGTTTTTGCCAGATGATGTTCATATAAGATCTAATGGGAGAGTTCGAGTTGCTGTGACACAGCTTCTTTGGAGACCCCGAGGTTTGTTGGTAGATCAGTTTGATTCCAAGGAAGATCTCATCAATGCAGTTTTTACCTCTTCCTTTATTCCAGGATATCTTGCACCAAGGCCAGCAACGATGTTTCGGAATCGACTATGCATTGATGGGGGTTTGACATTGTTTATGCCACCGACATCTGCTGCACAAACGGTTCGTGTTTGTGCTTTTCCAGCAAGTCGATTGGGATTGCAAGGGATAGGAATTAGTCCAGACTGCAATCCTGAAAACGTGTGTAGCCCACGACAGCTTTTCAACTGGGCACTTGAACCAGCCGAAGATGCAATTCTTGACCGATTCTTTGAGCTTGGATATCTAGATGCTTCTGTCTGGGCAAAGGAAAACCCAGTTGAAGTAATAGTTCAAGATGATAGTCCTGCGTTTGGAAGTAGCAGTGCGACATAG

>Glyma15g05300.3   sequence type=CDS   gene model=Glyma15g05300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTCCCTGTATCTGCTCCTCCCATGCTCAGCGTCTCCCCTATGCAGCAAATCTAAACCCTAATTCTTCTATTCTCCGTCGACGCGCACAATTCATCAGCTTCGCCTCGAATTCTTCTCCACCTCAAGACGAGGAGGCCACTGCCAAGAAATCGTTTGCCGTGGCGACCGGCGAGCTGTTTCTAGGGCTGGCGACGCGCCTGATTAAGAGCCGAAACAAGGGAAGCAGCAGCCTCGCAGAAGATTCGGGTTCGGTGGGCATGTTTGAGAATAATTCTGAGGAGAGAATCGGAGCGGTGGTGGAGGACGAGATTGATCCCGACGTGGTTTGGGAGCAAAGAGTGAAAGACGTGGAGGCGGAGCGCAATAGGTATAGCCGCCTCGTCACCAGCCCTGGCTTTAGTTTCTCTGCCGCTGGACTTCTCTTCCCTTACCATCTTGGTGTCGCTCAATTTCTCATTCAAAATGGTTACATTAAGGAAACAACACCGTTAGCCGGTTCCTCAGCTGGAGCTATAGTTTGTGCTGTGATTGCTTCCGGAGCTAGTATGGAAGAAGCCTTGAATGCTACTAAAATATTGGCTGAAGATTGCCGCAATCGGGGGACTGCATTCCGGCTTGGGGCTGTTCTACGTGATATTCTTGACAAGTTTTTGCCAGATGATGTTCATATAAGATCTAATGGGAGAGTTCGAGTTGCTGTGACACAGCTTCTTTGGAGACCCCGAGGTTTGTTGGTAGATCAGTTTGATTCCAAGGAAGATCTCATCAATGCAGTTTTTACCTCTTCCTTTATTCCAGGATATCTTGCACCAAGGCCAGCAACGATGTTTCGGAATCGACTATGCATTGATGGGGGTTTGACATTGTTTATGCCACCGACATCTGCTGCACAAACGGTCCATCTTTGGTGTTTAGAGTCCAAGGCATTCCGATTCCAAAATTTCAACTTTCAAACCATTTGCAATCAAACCAATTAA

>Glyma15g05300.4   sequence type=CDS   gene model=Glyma15g05300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTCCCTGTATCTGCTCCTCCCATGCTCAGCGTCTCCCCTATGCAGCAAATCTAAACCCTAATTCTTCTATTCTCCGTCGACGCGCACAATTCATCAGCTTCGCCTCGAATTCTTCTCCACCTCAAGACGAGGAGGCCACTGCCAAGAAATCGTTTGCCGTGGCGACCGGCGAGCTGTTTCTAGGGCTGGCGACGCGCCTGATTAAGAGCCGAAACAAGGGAAGCAGCAGCCTCGCAGAAGATTCGGGTTCGGTGGGCATGTTTGAGAATAATTCTGAGGAGAGAATCGGAGCGGTGGTGGAGGACGAGATTGATCCCGACGTGGTTTGGGAGCAAAGAGTGAAAGACGTGGAGGCGGAGCGCAATAGGTATAGCCGCCTCGTCACCAGCCCTGGCTTTAGTTTCTCTGCCGCTGGACTTCTCTTCCCTTACCATCTTGGTGTCGCTCAATTTCTCATTCAAAATGGTTACATTAAGGAAACAACACCGTTAGCCGGTTCCTCAGCTGGAGCTATAGTTTGTGCTGTGATTGCTTCCGGAGCTAGTATGGAAGAAGCCTTGAATGCTACTAAAATATTGGCTGAAGATTGCCGCAATCGGGGGACTGCATTCCGGCTTGGGGCTGTTCTACGTGATATTCTTGACAAGTTTTTGCCAGATGATGTTCATATAAGATCTAATGGGAGAGTTCGAGTTGCTGTGACACAGCTTCTTTGGAGACCCCGAGGTTTGTTGGTAGATCAGTTTGATTCCAAGGAAGATCTCATCAATGCAGTTTTTACCTCTTCCTTTATTCCAGGATATCTTGCACCAAGGCCAGCAACGATGTTTCGGAATCGACTATGCATTGATGGGGGTTTGACATTGTTTATGCCACCGACATCTGCTGCACAAACGGTCCATCTTTGGTGTTTAGAGTCCAAGGCATTCCGATTCCAAAATTTCAACTTTCAAACCATTTGCAATCAAACCAATTAA

Predicted protein sequences of Glyma15g05300

Limit To All Plant Sequences

>Glyma15g05300.1   sequence type=predicted peptide   gene model=Glyma15g05300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGPCICSSHAQRLPYAANLNPNSSILRRRAQFISFASNSSPPQDEEATAKKSFAVATGELFLGLATRLIKSRNKGSSSLAEDSGSVGMFENNSEERIGAVVEDEIDPDVVWEQRVKDVEAERNRYSRLVTSPGFSFSAAGLLFPYHLGVAQFLIQNGYIKETTPLAGSSAGAIVCAVIASGASMEEALNATKILAEDCRNRGTAFRLGAVLRDILDKFLPDDVHIRSNGRVRVAVTQLLWRPRGLLVDQFDSKEDLINAVFTSSFIPGYLAPRPATMFRNRLCIDGGLTLFMPPTSAAQTVRVCAFPASRLGLQGIGISPDCNPENVCSPRQLFNWALEPAEDAILDRFFELGYLDASVWAKENPVEVIVQDDSPAFGSSSAT*

>Glyma15g05300.3   sequence type=predicted peptide   gene model=Glyma15g05300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGPCICSSHAQRLPYAANLNPNSSILRRRAQFISFASNSSPPQDEEATAKKSFAVATGELFLGLATRLIKSRNKGSSSLAEDSGSVGMFENNSEERIGAVVEDEIDPDVVWEQRVKDVEAERNRYSRLVTSPGFSFSAAGLLFPYHLGVAQFLIQNGYIKETTPLAGSSAGAIVCAVIASGASMEEALNATKILAEDCRNRGTAFRLGAVLRDILDKFLPDDVHIRSNGRVRVAVTQLLWRPRGLLVDQFDSKEDLINAVFTSSFIPGYLAPRPATMFRNRLCIDGGLTLFMPPTSAAQTVHLWCLESKAFRFQNFNFQTICNQTN*

>Glyma15g05300.4   sequence type=predicted peptide   gene model=Glyma15g05300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGPCICSSHAQRLPYAANLNPNSSILRRRAQFISFASNSSPPQDEEATAKKSFAVATGELFLGLATRLIKSRNKGSSSLAEDSGSVGMFENNSEERIGAVVEDEIDPDVVWEQRVKDVEAERNRYSRLVTSPGFSFSAAGLLFPYHLGVAQFLIQNGYIKETTPLAGSSAGAIVCAVIASGASMEEALNATKILAEDCRNRGTAFRLGAVLRDILDKFLPDDVHIRSNGRVRVAVTQLLWRPRGLLVDQFDSKEDLINAVFTSSFIPGYLAPRPATMFRNRLCIDGGLTLFMPPTSAAQTVHLWCLESKAFRFQNFNFQTICNQTN*

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