Glyma15g05270 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma15g05270

Feature Type:	gene_model
Chromosome:	Gm15
Start:	3741079
stop:	3743544
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g05270

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G20870	AT	Annotation by Michelle Graham. TAIR10: HSP20-like chaperones superfamily protein \| chr1:7259287-7260775 REVERSE LENGTH=463	SoyBase	E_val: 3.00E-46	ISS
GO:0009408	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to heat	SoyBase	N/A	ISS
GO:0009644	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to high light intensity	SoyBase	N/A	ISS
GO:0042542	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to hydrogen peroxide	SoyBase	N/A	ISS
GO:0005575	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cellular component	SoyBase	N/A	ISS
UniRef100_I1MDP9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1MDP9_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q84KA7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Heat-shock protein-like protein n=1 Tax=Cucumis melo subsp. melo RepID=Q84KA7_CUCME	SoyBase	E_val: 2.00E-62	ISS

Expression Patterns of Glyma15g05270

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g05270

Paralog	Evidence	Comments
Glyma08g19750	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g05270 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g047500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g05270

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g05270

Limit To All Plant Sequences

>Glyma15g05270.1   sequence type=CDS   gene model=Glyma15g05270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTTTAGAGGAAATCTTAATTGCAAGAGAAGGGCTCTCACTGTGAAACCGGTGAGTAGTGATAGTGATAGGAAGTTTCTCATTGACTTCATCGTCACTACTTATTTGGGACCTGATGTCAAGTCTCATAATCCAAGATGTTCTGTTATTCAAAGACTAATTGCCGGATCCCCACTCTATATCTTGAGTGATTTGGGACCTTCATATGTTAGCGTTTCTTTCTTGGAGAGATTGTACTATTATCTCCTCAGAGATGCTTCTCCTGACCTTGTCTTGGATATCAATATGTTCCATATGTATCTAAAGGGAAAATTAGTTTTGCCCACTTCTGACTTTACCCGGGATAGTCAGCAGTTCACCAGCTTTTTCCCTTTGGATCTGCATCAACAGATACGGTACCCTGATAGCTTCAGAGTTGTTAAAGGGGCTGTTTTAATTGATGATCCTTCTACGTCATGCATCAAAGAGAAGGATTTAAATAGATTCAGGTCTTTAACTGGTGTCAGAACTTTCAAGTTAAATATAAGTGAATGTCAATGTTTTCAACTTGATCGTCGGTCAAGCAAGGAAGCTGATGGTAGTTGCATGAACAAAATGCCAGAGACTTTTCCAAACGGGGGATGCCAATCAGAGAAATTCCAACAAGAGCGCAAGAGGAAGTATACTGATGACACATCGCTAATGCTGGAATTTCCAGATGTCCTCCCTACAGAACATAATGCCAAGGTAGAACCTTCCAGGAAAAAGTGCAAATCTGATGGGCCAACATTCATGCCTCTTCTCCCTATTCCTGATGTTGATGACTGCAATCGAGATTCTTCTCTTATTTTAACAGGGGCAGCCAGAAGAGGGCCATTTGGTCCATCTGTTGGCGTTGTAGACATTGGTATTAGTAAAGTGGCATATCTATTTCGAATTTCCTTACCAGGGGTCAAGAAAGATTGCAGTCAGTTCAGTTGTGATATTGAATCTGATGGGAGGGTTCAGATCAGAGGGGTGCTAACTGGTGGAAGTACTATAACTAAACAATCACGTGTTTTTAAGATGAAAATTAGGCAGTTATGCTCTCCTGGACCATTTACACTTTCATTCAGTCTTCCGGGACCTGTTGATCCTAGACTCTTCGCACCTAACTTCAGGCCTGATGGCATTTTTGAAGGAGTTATAATCAAGCAGTAG

Predicted protein sequences of Glyma15g05270

Limit To All Plant Sequences

>Glyma15g05270.1   sequence type=predicted peptide   gene model=Glyma15g05270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDFRGNLNCKRRALTVKPVSSDSDRKFLIDFIVTTYLGPDVKSHNPRCSVIQRLIAGSPLYILSDLGPSYVSVSFLERLYYYLLRDASPDLVLDINMFHMYLKGKLVLPTSDFTRDSQQFTSFFPLDLHQQIRYPDSFRVVKGAVLIDDPSTSCIKEKDLNRFRSLTGVRTFKLNISECQCFQLDRRSSKEADGSCMNKMPETFPNGGCQSEKFQQERKRKYTDDTSLMLEFPDVLPTEHNAKVEPSRKKCKSDGPTFMPLLPIPDVDDCNRDSSLILTGAARRGPFGPSVGVVDIGISKVAYLFRISLPGVKKDCSQFSCDIESDGRVQIRGVLTGGSTITKQSRVFKMKIRQLCSPGPFTLSFSLPGPVDPRLFAPNFRPDGIFEGVIIKQ*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain