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Report for Sequence Feature Glyma15g05260

Feature Type:gene_model
Chromosome:Gm15
Start:3736929
stop:3740245
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G25290AT Annotation by Michelle Graham. TAIR10: RHOMBOID-like protein 10 | chr1:8867157-8868945 FORWARD LENGTH=343 SoyBaseE_val: 1.00E-93ISS
GO:0006508GO-bp Annotation by Michelle Graham. GO Biological Process: proteolysis SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0031969GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast membrane SoyBaseN/AISS
GO:0004252GO-mf Annotation by Michelle Graham. GO Molecular Function: serine-type endopeptidase activity SoyBaseN/AISS
KOG2632 KOG Rhomboid family proteins JGI ISS
PTHR22936Panther RHOMBOID-RELATED JGI ISS
PF01694PFAM Rhomboid family JGI ISS
UniRef100_G7IR52UniRef Annotation by Michelle Graham. Most informative UniRef hit: Rhomboid protease gluP n=1 Tax=Medicago truncatula RepID=G7IR52_MEDTR SoyBaseE_val: 2.00E-107ISS
UniRef100_I1MDP8UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MDP8_SOYBN SoyBaseE_val: 6.00E-177ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma08g19760 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma15g05260.1   sequence type=CDS   gene model=Glyma15g05260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTGGTAAAGATCCATTTAATGGAAGGAAATGGACAGAAATTCTCCTTGCTGCCAATGTTTTCAGTTTGTACGATCGTTTTTGGTTCTATTGCTTATTGTTTACTGATTATTTGCACAAATTTTATATTGCACAACTTGCAACCCAAGGCAAGCTATTATTGTGGGGAGCAAAGATAAATAGTCTAATTGAAAAAGGACAACTTTGGAGACTTGCCATGTCTTCCTTTTTGCATGCCAACACCGGGCACCTTTTGGTAAATTGTTATTCCTTAAATTCAGTTGGTCCCACTGTGGAGAGCTTCAGTGGTCCTCGAAGATTTCTTGCAGTTTACTTTATCTCTGCAATTTACAAAAAATCAGGTTCTGCTATGAGTTATTGGTTCTGCAGAATGCCTTCAGAAGGTGCATCAGGAGCAATTTTTGGACTAGTTGGATCAGTTGCCGTATTTGTATTGAGGCACAAAGACCTTGTGGGAGGTGGTAAAAAAGATTTACAGCACATAGCACAAGTAATTGCCCTCAATATGGTTACTGGGCTATTCTCCACTCGGATCGCCAACCGGGGACATTTAGGAGGGTTGGTTGGTGGCGTTGCTGCATCATGGTTTATTGGACCGGCATGGAAACATGAATCCACATCAAGGGATGGAAGAAGACTTTTCATTGACACTGCACCAATGTATAAACTCTTCAAGATTAAAAGAGTACCTAAGCAATGGAAATAG

>Glyma15g05260.1   sequence type=predicted peptide   gene model=Glyma15g05260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSGKDPFNGRKWTEILLAANVFSLYDRFWFYCLLFTDYLHKFYIAQLATQGKLLLWGAKINSLIEKGQLWRLAMSSFLHANTGHLLVNCYSLNSVGPTVESFSGPRRFLAVYFISAIYKKSGSAMSYWFCRMPSEGASGAIFGLVGSVAVFVLRHKDLVGGGKKDLQHIAQVIALNMVTGLFSTRIANRGHLGGLVGGVAASWFIGPAWKHESTSRDGRRLFIDTAPMYKLFKIKRVPKQWK*







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