Report for Sequence Feature Glyma15g05260
Feature Type: gene_model
Chromosome: Gm15
Start: 3736929
stop: 3740245
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma15g05260
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G25290 AT
Annotation by Michelle Graham. TAIR10: RHOMBOID-like protein 10 | chr1:8867157-8868945 FORWARD LENGTH=343
SoyBase E_val: 1.00E-93 ISS
GO:0006508 GO-bp
Annotation by Michelle Graham. GO Biological Process: proteolysis
SoyBase N/A ISS
GO:0005886 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane
SoyBase N/A ISS
GO:0031969 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast membrane
SoyBase N/A ISS
GO:0004252 GO-mf
Annotation by Michelle Graham. GO Molecular Function: serine-type endopeptidase activity
SoyBase N/A ISS
KOG2632
KOG
Rhomboid family proteins
JGI ISS
PTHR22936 Panther
RHOMBOID-RELATED
JGI ISS
PF01694 PFAM
Rhomboid family
JGI ISS
UniRef100_G7IR52 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Rhomboid protease gluP n=1 Tax=Medicago truncatula RepID=G7IR52_MEDTR
SoyBase E_val: 2.00E-107 ISS
UniRef100_I1MDP8 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MDP8_SOYBN
SoyBase E_val: 6.00E-177 ISS
Expression Patterns of Glyma15g05260
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma15g05260
Paralog Evidence Comments
Glyma08g19760 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma15g05260 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
References for Glyma15g05260
Coding sequences of Glyma15g05260
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma15g05260.1 sequence type=CDS gene model=Glyma15g05260 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTCTGGTAAAGATCCATTTAATGGAAGGAAATGGACAGAAATTCTCCTTGCTGCCAATGTTTTCAGTTTGTACGATCGTTTTTGGTTCTATTGCTTATTGTTTACTGATTATTTGCACAAATTTTATATTGCACAACTTGCAACCCAAGGCAAGCTATTATTGTGGGGAGCAAAGATAAATAGTCTAATTGAAAAAGGACAACTTTGGAGACTTGCCATGTCTTCCTTTTTGCATGCCAACACCGGGCACCTTTTGGTAAATTGTTATTCCTTAAATTCAGTTGGTCCCACTGTGGAGAGCTTCAGTGGTCCTCGAAGATTTCTTGCAGTTTACTTTATCTCTGCAATTTACAAAAAATCAGGTTCTGCTATGAGTTATTGGTTCTGCAGAATGCCTTCAGAAGGTGCATCAGGAGCAATTTTTGGACTAGTTGGATCAGTTGCCGTATTTGTATTGAGGCACAAAGACCTTGTGGGAGGTGGTAAAAAAGATTTACAGCACATAGCACAAGTAATTGCCCTCAATATGGTTACTGGGCTATTCTCCACTCGGATCGCCAACCGGGGACATTTAGGAGGGTTGGTTGGTGGCGTTGCTGCATCATGGTTTATTGGACCGGCATGGAAACATGAATCCACATCAAGGGATGGAAGAAGACTTTTCATTGACACTGCACCAATGTATAAACTCTTCAAGATTAAAAGAGTACCTAAGCAATGGAAATAG
Predicted protein sequences of Glyma15g05260
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma15g05260.1 sequence type=predicted peptide gene model=Glyma15g05260 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MSGKDPFNGRKWTEILLAANVFSLYDRFWFYCLLFTDYLHKFYIAQLATQGKLLLWGAKINSLIEKGQLWRLAMSSFLHANTGHLLVNCYSLNSVGPTVESFSGPRRFLAVYFISAIYKKSGSAMSYWFCRMPSEGASGAIFGLVGSVAVFVLRHKDLVGGGKKDLQHIAQVIALNMVTGLFSTRIANRGHLGGLVGGVAASWFIGPAWKHESTSRDGRRLFIDTAPMYKLFKIKRVPKQWK*