Glyma15g05170 - SoyBase

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Report for Sequence Feature Glyma15g05170

Feature Type:	gene_model
Chromosome:	Gm15
Start:	3693548
stop:	3698599
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g05170

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G10890	AT	Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: petal, flower, leaf; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G13340.1); Has 11769 Blast hits to 8435 proteins in 698 species: Archae - 22; Bacteria - 971; Metazoa - 5937; Fungi - 1065; Plants - 592; Viruses - 101; Other Eukaryotes -	SoyBase	E_val: 7.00E-67	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_A2Q3T8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ribosomal protein S7 n=1 Tax=Medicago truncatula RepID=A2Q3T8_MEDTR	SoyBase	E_val: 3.00E-99	ISS
UniRef100_I1MDP0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MDP0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g05170

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g05170

Paralog	Evidence	Comments
Glyma08g19850	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g05170 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g046600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g05170

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma15g05170

Limit To All Plant Sequences

>Glyma15g05170.3   sequence type=transcript   gene model=Glyma15g05170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGAAAATAGAAAATAGAAAAAAGTATTTTGGTCCACCTTCCGTCTTCTATCGCCGTTGTCTTCCTCCATCGTGTTAGGGTTTCCACTTTGCAGAGTTTCAATTTACTCTCATTATCACATCGCAATTCCTCCGTGTTTCTGTTTTGATAACTCGCAAATATTCTACTTAATAGCCCGACATCTCGTTCCCTGAATACTGATTTTGAGCTTTCCCCTGATTTTTTTAGGGAAACAAATTATTGCCCCTTCCTTTTTTCCAATCATCTCCAGTGAAAAAAAAAAAAAAAACTATATCTGAAGTTTATTGGGGATCGGGTATTGGGAAATGCCTCGAGACTTGTCACGATCCCGATCGCCTCCCTATAGGCGGAGGCATTCACCATCTCCTGTGGGACACAGGTATAGCAGGAGGAGCAGAAGAGACAGAAGCAGATCTCCTTATTCGTCCTACTCTTACAGCAGGCGAAAAAGTCGTTCTATTTCACCAAGAGGTCACAGAAGTCCTTCTACAACTCCAAGACGTGGTAGAAGCCGATCTCCATCTGCTAAACGATACAGAAGACATAGAAGTAGGAGTTCCTCATTGTCTCCTACTCGTAAATCTTCCAGTCCAAGTCTTGTGTCAGTAGAGCACAAAAGTGCCACTGAAAAACAAAAGAAAGAAGAAGAGAAGAAAAGGCGTCAACTAGAAGCAGAGTTGAAATTAATAGAAGAAGAGACTGCAAAGAGAGTTGAAGAAGCAATACGTAAGAGAGTTGAAGAAAGCTTGAAATCTGAGGAGGTTCAGGTGGAGATTGAAAGGCGGTTGGAAGAGGGACGGAAGAGACTTAATGATGAAGTTGCAGCTCAACTTGAAAAAGAAAAAGAAGCTGCCCTTATTGAGGCTAAACAGAAGGAGGAGCAAGCCCGTAAAGAGAAAGAAGATCTTGAAAGGATGCTTGAGGAGAACCGGAGGAAGGTTGAAGAAGCTCAGAGAAGGGAAGCTTTAGAGCAGCAAAGAAGGGAGGAAGAACGATATAAAGAGCTGGAAGAGATGCAAAGACAGAAGGAAGAAGCCATGCGAAAAAAGAAACAGGAGGAGGAGCAAGAACGTCTAAACCAAATAAAGTTGTTGGGTAAAAACAAATCCCGACCAAAATTGTCATTTGCTTTTGGATCCAAATGACCATTGGCTTGGGCAACCTGTGTCTATTTATTTAGTCTAAAGTGTGTTTGGGCTTAATTCCCTATTTGTGTCTGTAATTTGAGGAAAATCAGGAAATTATACACAGCCTCCTCAACTATAATGTGACAGCGTTGTTACCGTTTTCAGTTTGCATTAGATTTCATTGTTTATCATTGCCACATAATTCTCCATTCATCTTTTTTTTCCGATGTTGTGAGATTGAGAGGAGAGACCTGGGCCTAAGATGAGAGAAA

Coding sequences of Glyma15g05170

Limit To All Plant Sequences

>Glyma15g05170.2   sequence type=CDS   gene model=Glyma15g05170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCTCGAGACTTGTCACGATCCCGATCGCCTCCCTATAGGCGGAGGCATTCACCATCTCCTGTGGGACACAGGTATAGCAGGAGGAGCAGAAGAGACAGAAGCAGATCTCCTTATTCGTCCTACTCTTACAGCAGGCGAAAAAGTCGTTCTATTTCACCAAGAGGTCACAGAAGTCCTTCTACAACTCCAAGACGTGGTAGAAGCCGATCTCCATCTGCTAAACGATACAGAAGACATAGAAGTAGGAGTTCCTCATTGTCTCCTACTCGTAAATCTTCCAGTCCAAGTCTTGTGTCAGTAGAGCACAAAAGTGCCACTGAAAAACAAAAGAAAGAAGAAGAGAAGAAAAGGCGTCAACTAGAAGCAGAGTTGAAATTAATAGAAGAAGAGACTGCAAAGAGAGTTGAAGAAGCAATACGTAAGAGAGTTGAAGAAAGCTTGAAATCTGAGGAGGTTCAGGTGGAGATTGAAAGGCGGTTGGAAGAGGGACGGAAGAGACTTAATGATGAAGTTGCAGCTCAACTTGAAAAAGAAAAAGAAGCTGCCCTTATTGAGGCTAAACAGAAGGAGGAGCAAGCCCGTAAAGAGAAAGAAGATCTTGAAAGGATGCTTGAGGAGAACCGGAGGAAGGTTGAAGAAGCTCAGAGAAGGGAAGCTTTAGAGCAGCAAAGAAGGGAGGAAGAACGATATAAAGAGCTGGAAGAGATGCAAAGACAGAAGGAAGAAGCCATGCGAAAAAAGAAACAGGAGGAGGAGCAAGAACGTCTAAACCAAATAAAGTTGTTGGGTAAAAACAAATCCCGACCAAAATTGTCATTTGCTTTTGGATCCAAATGA

>Glyma15g05170.3   sequence type=CDS   gene model=Glyma15g05170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCTCGAGACTTGTCACGATCCCGATCGCCTCCCTATAGGCGGAGGCATTCACCATCTCCTGTGGGACACAGGTATAGCAGGAGGAGCAGAAGAGACAGAAGCAGATCTCCTTATTCGTCCTACTCTTACAGCAGGCGAAAAAGTCGTTCTATTTCACCAAGAGGTCACAGAAGTCCTTCTACAACTCCAAGACGTGGTAGAAGCCGATCTCCATCTGCTAAACGATACAGAAGACATAGAAGTAGGAGTTCCTCATTGTCTCCTACTCGTAAATCTTCCAGTCCAAGTCTTGTGTCAGTAGAGCACAAAAGTGCCACTGAAAAACAAAAGAAAGAAGAAGAGAAGAAAAGGCGTCAACTAGAAGCAGAGTTGAAATTAATAGAAGAAGAGACTGCAAAGAGAGTTGAAGAAGCAATACGTAAGAGAGTTGAAGAAAGCTTGAAATCTGAGGAGGTTCAGGTGGAGATTGAAAGGCGGTTGGAAGAGGGACGGAAGAGACTTAATGATGAAGTTGCAGCTCAACTTGAAAAAGAAAAAGAAGCTGCCCTTATTGAGGCTAAACAGAAGGAGGAGCAAGCCCGTAAAGAGAAAGAAGATCTTGAAAGGATGCTTGAGGAGAACCGGAGGAAGGTTGAAGAAGCTCAGAGAAGGGAAGCTTTAGAGCAGCAAAGAAGGGAGGAAGAACGATATAAAGAGCTGGAAGAGATGCAAAGACAGAAGGAAGAAGCCATGCGAAAAAAGAAACAGGAGGAGGAGCAAGAACGTCTAAACCAAATAAAGTTGTTGGGTAAAAACAAATCCCGACCAAAATTGTCATTTGCTTTTGGATCCAAATGA

Predicted protein sequences of Glyma15g05170

Limit To All Plant Sequences

>Glyma15g05170.2   sequence type=predicted peptide   gene model=Glyma15g05170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPRDLSRSRSPPYRRRHSPSPVGHRYSRRSRRDRSRSPYSSYSYSRRKSRSISPRGHRSPSTTPRRGRSRSPSAKRYRRHRSRSSSLSPTRKSSSPSLVSVEHKSATEKQKKEEEKKRRQLEAELKLIEEETAKRVEEAIRKRVEESLKSEEVQVEIERRLEEGRKRLNDEVAAQLEKEKEAALIEAKQKEEQARKEKEDLERMLEENRRKVEEAQRREALEQQRREEERYKELEEMQRQKEEAMRKKKQEEEQERLNQIKLLGKNKSRPKLSFAFGSK*

>Glyma15g05170.3   sequence type=predicted peptide   gene model=Glyma15g05170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPRDLSRSRSPPYRRRHSPSPVGHRYSRRSRRDRSRSPYSSYSYSRRKSRSISPRGHRSPSTTPRRGRSRSPSAKRYRRHRSRSSSLSPTRKSSSPSLVSVEHKSATEKQKKEEEKKRRQLEAELKLIEEETAKRVEEAIRKRVEESLKSEEVQVEIERRLEEGRKRLNDEVAAQLEKEKEAALIEAKQKEEQARKEKEDLERMLEENRRKVEEAQRREALEQQRREEERYKELEEMQRQKEEAMRKKKQEEEQERLNQIKLLGKNKSRPKLSFAFGSK*

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