SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G71190 | AT | Annotation by Michelle Graham. TAIR10: senescence associated gene 18 | chr1:26833597-26834982 REVERSE LENGTH=281 | SoyBase | E_val: 6.00E-141 | ISS |
| GO:0006672 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ceramide metabolic process | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0016021 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane | SoyBase | N/A | ISS |
| GO:0016811 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides | SoyBase | N/A | ISS |
| PF05875 | PFAM | Alkaline phytoceramidase (aPHC) | JGI | ISS | |
| UniRef100_B6T2L1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Membrane protein n=2 Tax=Zea mays RepID=B6T2L1_MAIZE | SoyBase | E_val: 9.00E-134 | ISS |
| UniRef100_I1MDN5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MDN5_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma15g05100 not represented in the dataset |
Glyma15g05100 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma08g19950 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.15g046100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma15g05100.2 sequence type=transcript gene model=Glyma15g05100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GCAAAGGGAAAGAGAGGAAGAGTGAAAATGAAAATGAGAAGGGGGTCGGGGGGAATATTGAACACAACACCCACTGCACAGCTTCATAACTAAACCGCCATCGCCTCCAAGACTTTCCGTGCCCAAAAGATGAGAAAACGCAGCATTTACGCATGGCTAGTAGCACTTGTTTGCTTCCTCCTACTCATGATCGTCACCCCAGCCATTCCCCAGTCACAAGAATACCATGATTTCGCCGACCACCGCACCTTCCTCGGTATTCCCAATGCACTTAACGTGATATCCAATTTCCCTTTTCTGGTTATTGGCCTCGTTGGACTTGTACTCTGTCATCATGGAAATTACTTTAGGCTCAGTTGCAGTTGGATCTTCATACTATCATCTCAAGCCAGACGATGCTCGCCTTGTGTGGGATCGCTTGCCCATGACCGTCGCTTTTACATCAATCATGGCAATATTCATCATTGAGCGGATTGATGAGAGGAAGGGAACGGTTTCTATTATACCTCTAGTTTTGGCGGGTATAATAAGCATTGTGTATTGGAGATTCTTTGATGACCTGCGTCCATATGCTCTAGTCCAATTTGTGCCATGCATTGTCATTCCTCTAATGGCTATTTTGTTGCCTCCAATGTACACACATTCAACATATTGGCTCTGGGCTGCAGGGTCTTATCTTCTAGCTAAGGTGCTAGAGGCTACTGATGATGTGATCTATGAATGGGCGCAACATATTGTCAGTGGTCACACACTTAAGCATCTGGTTGCAGCAATGGTTCCTGTCTTCTTAACATTCATGCTTGCTAAGAGGAGTGTTGAACCTGAGAGGCAAAGTTTGCTTAAAACGTGGAGGGTTTCCTGGACGAAGTTCAGAGAGGGCAACTCCAACATTGAGAGCTACTCTTACTCTTACACAAATGTGCAGGCTGTGGAGCCCCAGTGATGTGTTACTTTCCCATAGAACAAAAAATAATAAAGGCTTATCCTGGATTACGGAATATTGTTACACTTGACTGTGGACTAGGTAAAACAAGACATAGCAAGTTAACTTTCACACAATAATATTATCTGTAATTAACTTTGTATAGTTCCCGATCTTTATCACATAGAGAGGACCATTTAGATCTGTGATTCTGTATGTGTTGTCTAATGTCTATTTTTCGTTCAGCATGGTTATAATCTGCACGCCTTCAAAGTTCAAACCCTTGTAGTGCTTGTCATGAGAAATCATACTAACTGATATTAATTAGGAATTTAGGATATTCCTGGTATGTTGCAATGCTCA
>Glyma15g05100.1 sequence type=CDS gene model=Glyma15g05100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGAAAACGCAGCATTTACGCATGGCTAGTAGCACTTGTTTGCTTCCTCCTACTCATGATCGTCACCCCAGCCATTCCCCAGTCACAAGAATACCATGATTTCGCCGACCACCGCACCTTCCTCGGTATTCCCAATGCACTTAACGTGATATCCAATTTCCCTTTTCTGGTTATTGGCCTCGTTGGACTTGTACTCTGTCATCATGGAAATTACTTTAGGCTCAGCTTGCAAGGTGAACTATGGGGCTGGACATGCTTCTATGTTGGCGTGGCTGCAGTTGCAGTTGGATCTTCATACTATCATCTCAAGCCAGACGATGCTCGCCTTGTGTGGGATCGCTTGCCCATGACCGTCGCTTTTACATCAATCATGGCAATATTCATCATTGAGCGGATTGATGAGAGGAAGGGAACGGTTTCTATTATACCTCTAGTTTTGGCGGGTATAATAAGCATTGTGTATTGGAGATTCTTTGATGACCTGCGTCCATATGCTCTAGTCCAATTTGTGCCATGCATTGTCATTCCTCTAATGGCTATTTTGTTGCCTCCAATGTACACACATTCAACATATTGGCTCTGGGCTGCAGGGTCTTATCTTCTAGCTAAGGTGCTAGAGGCTACTGATGATGTGATCTATGAATGGGCGCAACATATTGTCAGTGGTCACACACTTAAGCATCTGGTTGCAGCAATGGTTCCTGTCTTCTTAACATTCATGCTTGCTAAGAGGAGTGTTGAACCTGAGAGGCAAAGTTTGCTTAAAACGTGGAGGGTTTCCTGGACGAAGTTCAGAGAGGGCAACTCCAACATTGAGAGCTACTCTTACTCTTACACAAATGTGCAGGCTGTGGAGCCCCAGTGA >Glyma15g05100.2 sequence type=CDS gene model=Glyma15g05100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAAATTACTTTAGGCTCAGTTGCAGTTGGATCTTCATACTATCATCTCAAGCCAGACGATGCTCGCCTTGTGTGGGATCGCTTGCCCATGACCGTCGCTTTTACATCAATCATGGCAATATTCATCATTGAGCGGATTGATGAGAGGAAGGGAACGGTTTCTATTATACCTCTAGTTTTGGCGGGTATAATAAGCATTGTGTATTGGAGATTCTTTGATGACCTGCGTCCATATGCTCTAGTCCAATTTGTGCCATGCATTGTCATTCCTCTAATGGCTATTTTGTTGCCTCCAATGTACACACATTCAACATATTGGCTCTGGGCTGCAGGGTCTTATCTTCTAGCTAAGGTGCTAGAGGCTACTGATGATGTGATCTATGAATGGGCGCAACATATTGTCAGTGGTCACACACTTAAGCATCTGGTTGCAGCAATGGTTCCTGTCTTCTTAACATTCATGCTTGCTAAGAGGAGTGTTGAACCTGAGAGGCAAAGTTTGCTTAAAACGTGGAGGGTTTCCTGGACGAAGTTCAGAGAGGGCAACTCCAACATTGAGAGCTACTCTTACTCTTACACAAATGTGCAGGCTGTGGAGCCCCAGTGA
>Glyma15g05100.1 sequence type=predicted peptide gene model=Glyma15g05100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRKRSIYAWLVALVCFLLLMIVTPAIPQSQEYHDFADHRTFLGIPNALNVISNFPFLVIGLVGLVLCHHGNYFRLSLQGELWGWTCFYVGVAAVAVGSSYYHLKPDDARLVWDRLPMTVAFTSIMAIFIIERIDERKGTVSIIPLVLAGIISIVYWRFFDDLRPYALVQFVPCIVIPLMAILLPPMYTHSTYWLWAAGSYLLAKVLEATDDVIYEWAQHIVSGHTLKHLVAAMVPVFLTFMLAKRSVEPERQSLLKTWRVSWTKFREGNSNIESYSYSYTNVQAVEPQ* >Glyma15g05100.2 sequence type=predicted peptide gene model=Glyma15g05100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEITLGSVAVGSSYYHLKPDDARLVWDRLPMTVAFTSIMAIFIIERIDERKGTVSIIPLVLAGIISIVYWRFFDDLRPYALVQFVPCIVIPLMAILLPPMYTHSTYWLWAAGSYLLAKVLEATDDVIYEWAQHIVSGHTLKHLVAAMVPVFLTFMLAKRSVEPERQSLLKTWRVSWTKFREGNSNIESYSYSYTNVQAVEPQ*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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