Glyma15g05080 - SoyBase

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Report for Sequence Feature Glyma15g05080

Feature Type:	gene_model
Chromosome:	Gm15
Start:	3641686
stop:	3648173
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g05080

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G60995	AT	Annotation by Michelle Graham. TAIR10: FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Membralin (InterPro:IPR019144); Has 172 Blast hits to 170 proteins in 70 species: Archae - 0; Bacteria - 0; Metazoa - 110; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink). \| chr1:22465768-22470575 REVERSE LENGTH=623	SoyBase	E_val: 0	ISS
KOG2092	KOG	Uncharacterized conserved protein	JGI		ISS
PTHR21650	Panther	MEMBRALIN/KINETOCHORE PROTEIN NUF2	JGI		ISS
PTHR21650:SF4	Panther	gb def: Hypothetical protein At1g61000/T7P1 14	JGI		ISS
PF09746	PFAM	Tumour-associated protein	JGI		ISS
UniRef100_G7IPG0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Membralin n=1 Tax=Medicago truncatula RepID=G7IPG0_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1MDN3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MDN3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g05080

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g05080

Paralog	Evidence	Comments
Glyma08g19970	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g05080 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g045900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g05080

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g05080

Limit To All Plant Sequences

>Glyma15g05080.1   sequence type=CDS   gene model=Glyma15g05080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATCCGGAGCAGACTTTCATACGCGTGCAGGAGAGGTTTTCTCAGATGCTGACGCCCAAAGTCAGAGTTGCTTTGGAGTATCTCTACCTGTTCATCGCCATAACCTTATTCTGCATTCTCGTTGTTATGCACGCCAATTACGTTCAACAGCCTGGGTGTTCAAGTGAGCTATCCGGAGTAGTGACATCAGAAGCCCAACTTATTCAGATTAAGATAACCAGTGCCGGCCTGTGGTCTCATAATGATTCTGAATCAAACAGAATAGATCCCCCTGAAACAGAAATTGTAAAAGACAAAATGGAGATTTCTGATGTCAGTGGAGATAAATTGCCATTTTTGGCTTCCAAGCTTTGGTGGAACTGGATTGGTTCAGGTGCTAGGAGAGGAAAATTGGTATTCAAGTTTTGGAAAACTGACACTGAGTTTCTTGAACATCAAGCTGAAACCTCTACAAGTAATCAAAACACCAGGCCAGTGGGTGAAGATGCTGTCATCAAAATTGATAAAGAGGACCCACCAAAAAGTTTTACTTTATCAGCCAAAGAGACATTAAAAGCAGCAATTATACATTTTGGTAAAAAGTGGTATAGGCGCATCTCATTCATTTGGAGGCACACCATGCAGATCATCGGAAGTTTTCAGAAGCTATGGAATATTGCTGGTGTACACTTAAATCTTGATATTCCCAAATGGATGCATATCCTTCGTTTGGACAGGCTTAACACCAATGCAGTGCAATGGCTTAACAAGAAAGGAAAGTTATTTGAACCCACATATCTTTATACTATGGAAAAGGGGTATTTCTTGTTACCTGAAAGTGCTAAATCTCATCATAATATACGTACTGTGAATGTTAGCATATCAGCTTGGCACTCCTGCTTTGGAAACAGGTGGCAGCAACTACTCATAAACAGATTTGTCGGATATGATACGATTTTAATCAATAGTTTATTGAGTTCTCCTGGTCAAGGTTATCTTTATAACTATCAAACAAAGGAATTCTATAACCTTAGTTATGCACAAGAAGTTCCGGAAGGCCCAGCTAGGTTTGGAGACTATCTTGTAACAAAGTGTGGCGTGCTTATGATGTCCTTGTTTGTATTTTTTACTACCACAATGTCAGTATCATTTACATTAAGAGAAACACAGACTCGCATGCTGAAGTTCACGGTGCAGCTTCAACACCATGCACGGCATCGCCTTCCAACATTTCAGCTGATCTTTGTACATGTGATTGAATCACTAGTTTTTGTTCCTATTATGATTGGCATTCTGTTTTTTCTCTTTGAGTTTTATGATGATCAGCTACTTGCCTTCATGGTCTTGATTCTTGTCTGGTTGTGTGAACTTTTTACTCTCATCAGTGTCCGAACACCAATATCAATGAAGTTCTTTCCTCGCTTCTTTTTGCTGTATTTCCTGGTCTTCCACATATATTTCTTCTCTTATGCTTACGGTTTTTCGTATTTGGCTCTTTCTACAACCGCGGCTTTTATGCAACACCTTATCCTGTACTTTTGGAATCGGTTTGAGGTACCGGCACTGCAAAGGTACATGCAAAATCGACGGTCACAACTTCAGCAACACCCAGACTTCCACATTACCTCTTCCACCATTCTTGCATCAACGTTACACATCACAAGATTGAACACAAGAAACCAGGGATTAAATAACGTTGACTTGGCTACTGGAGCAGGGTTGAGACCTGGTTTTGATCAATCAATGCCCCAAAATGGACCAGGAGTTGCCGATCCTCAAGATCGGTCAGAAAATAATCGAGACAGGGTTGCGAACCCTGCCCAGATTCCTGGGCAAGCTGACATTCAACAAGCAGAAAGGGGTCCGAACCCTGGATCCATGAATTCATTCAGTTCTTTGTTATTATGGATCTTAGGAGGTGCTTCGTCTGAGGGCCTAAACTCGTTTTTTTCAATGTTCAGAGACGTGAGAGAGCAAGGACAAGTTTTTAATGAAACACCTGGGGCTGGGGCTGGGGCTGGTGATGAAAGCCGTGAGAATCAGGATAATATTGACAGATAG

Predicted protein sequences of Glyma15g05080

Limit To All Plant Sequences

>Glyma15g05080.1   sequence type=predicted peptide   gene model=Glyma15g05080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDPEQTFIRVQERFSQMLTPKVRVALEYLYLFIAITLFCILVVMHANYVQQPGCSSELSGVVTSEAQLIQIKITSAGLWSHNDSESNRIDPPETEIVKDKMEISDVSGDKLPFLASKLWWNWIGSGARRGKLVFKFWKTDTEFLEHQAETSTSNQNTRPVGEDAVIKIDKEDPPKSFTLSAKETLKAAIIHFGKKWYRRISFIWRHTMQIIGSFQKLWNIAGVHLNLDIPKWMHILRLDRLNTNAVQWLNKKGKLFEPTYLYTMEKGYFLLPESAKSHHNIRTVNVSISAWHSCFGNRWQQLLINRFVGYDTILINSLLSSPGQGYLYNYQTKEFYNLSYAQEVPEGPARFGDYLVTKCGVLMMSLFVFFTTTMSVSFTLRETQTRMLKFTVQLQHHARHRLPTFQLIFVHVIESLVFVPIMIGILFFLFEFYDDQLLAFMVLILVWLCELFTLISVRTPISMKFFPRFFLLYFLVFHIYFFSYAYGFSYLALSTTAAFMQHLILYFWNRFEVPALQRYMQNRRSQLQQHPDFHITSSTILASTLHITRLNTRNQGLNNVDLATGAGLRPGFDQSMPQNGPGVADPQDRSENNRDRVANPAQIPGQADIQQAERGPNPGSMNSFSSLLLWILGGASSEGLNSFFSMFRDVREQGQVFNETPGAGAGAGDESRENQDNIDR*

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