Glyma15g05050 - SoyBase

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Report for Sequence Feature Glyma15g05050

Feature Type:	gene_model
Chromosome:	Gm15
Start:	3616581
stop:	3619098
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g05050

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G07960	AT	Annotation by Michelle Graham. TAIR10: PDI-like 5-1 \| chr1:2467681-2468831 FORWARD LENGTH=146	SoyBase	E_val: 7.00E-69	ISS
GO:0000280	GO-bp	Annotation by Michelle Graham. GO Biological Process: nuclear division	SoyBase	N/A	ISS
GO:0007000	GO-bp	Annotation by Michelle Graham. GO Biological Process: nucleolus organization	SoyBase	N/A	ISS
GO:0030244	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellulose biosynthetic process	SoyBase	N/A	ISS
GO:0045454	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell redox homeostasis	SoyBase	N/A	ISS
GO:0048193	GO-bp	Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
KOG0910	KOG	Thioredoxin-like protein	JGI		ISS
PTHR18929	Panther	PROTEIN DISULFIDE ISOMERASE	JGI		ISS
PF00085	PFAM	Thioredoxin	JGI		ISS
UniRef100_I1MDN0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MDN0_SOYBN	SoyBase	E_val: 1.00E-98	ISS
UniRef100_Q2HSV2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein disulfide-isomerase n=1 Tax=Medicago truncatula RepID=Q2HSV2_MEDTR	SoyBase	E_val: 1.00E-66	ISS

Expression Patterns of Glyma15g05050

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g05050

Paralog	Evidence	Comments
Glyma13g40350	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g05050 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g045500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g05050

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma15g05050

Limit To All Plant Sequences

>Glyma15g05050.4   sequence type=transcript   gene model=Glyma15g05050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTGGATGAAAGATCTGCAGTGCAGACAACATTTGGACGCGGTAGAGAAGAAAGAAAGGTTAGGGTAGATCACGCAGGCTTCAGCCATGAGAACTCACACAATTATCTCTCTCATTCTTCTCTCCTTATTTCTCCGAACCCAATCCGAGGTTATAACGTTATCCTCTGATACGTTTAATGATAAGATCAAGGAGAAAGACACTGCATGGTTTGTGAAATTCTGCGTTCCCTGGTGCAAGCATTGTAAGAACCTGGGTTCTTTGTGGGATGATTTGGGGAAGGCAATGGAAGGAGAAGATGAAATAGAGGTTGGAGAAGTCGATTGCGGCATGGACAAAGCAGTGTGTTCCAAAGTTGATATTCATTCATATCCTACCTTTAAGGTTTTCTATGATGGCGAGGAAGTAGCCAGATACCAAGGTACAAGAGATGTTGAATCAATGAAAACCTTTGTTTTGGAAGAAGCTGAAAAGGCAGCAGCAAAAGCACTTGAAAGTGACAAAGAATTATAACAACTTTTGAGGTATGCTACCAAGACACCCACCCCCTGCGCCTATATTCTTTTCTCTCTATGGAGTCTTGTAATATTAGTGCCTAGGGGGGGGGGGGGGGGGCACTTAAAATCTAGGTTGGTGGTGCTAAATCAGTGTGTTTGGTAGCCACCTTTCTTTCTATTTAACCTCCCATTCTTAATTTTGGTAGAGCTGCAACTTAGGATATTTTAGTGAACTAGCTATCAGTTTAGGATGAATTAACTGGAAGAATAGTTAATTAAGTCAACATATGAACTATTCACCATTCTTTTGGTTAATCATCTTAGATTTGAAATATATTAGCTGCCATATTCTAAATTATAATTCTTCCTTTAATTTTTTTCATTTAATGAATTTGCTATCCTTTTATATTGCATGCCAATTGATTGATTATAGTTTTGTCAGGCACAGTCATTATCTGGATTGCAACTAGCTCTTTACTGCAGGTGGTGCTCATCCCAGATTAGTAAACACCTTTGGGTTCAGGCTGAGACATTCATTCTTCTCTGTTCTGATCAGCATTTGTTTGTTCGACGTAGCAGTTGTGAGTTAAGAACTAACTCCGTACACTACCACAATTTCTTTCTGTTATGCTCCACAATTTTCCTTTTTAGGTTTAGTTATACTCTACAAAACTGATAGTGGCTTGTCAGTGTTAAAAGTTTCAATACAATGATCAGTGAATCATGAATCGTACTTCAGGATTTGTTTATATAATCATTCGATCTTTTGAATGCTCATTATTTTTATGGGATTATACCATCCTAATATCCTATAATCGCCTTCTT

Coding sequences of Glyma15g05050

Limit To All Plant Sequences

>Glyma15g05050.3   sequence type=CDS   gene model=Glyma15g05050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGAACTCACACAATTATCTCTCTCATTCTTCTCTCCTTATTTCTCCGAACCCAATCCGAGGTTATAACGTTATCCTCTGATACGTTTAATGATAAGATCAAGGAGAAAGACACTGCATGGTTTGTGAAATTCTGCGTTCCCTGGTGCAAGCATTGTAAGAACCTGGGTTCTTTGTGGGATGATTTGGGGAAGGCAATGGAAGGAGAAGATGAAATAGAGGTTGGAGAAGTCGATTGCGGCATGGACAAAGCAGTGTGTTCCAAAGTTGATATTCATTCATATCCTACCTTTAAGGTTTTCTATGATGGCGAGGAAGTAGCCAGATACCAAGGTACAAGAGATGTTGAATCAATGAAAACCTTTGTTTTGGAAGAAGCTGAAAAGGCAGCAGCAAAAGCACTTGAAAGTGACAAAGAATTATAA

>Glyma15g05050.4   sequence type=CDS   gene model=Glyma15g05050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGAACTCACACAATTATCTCTCTCATTCTTCTCTCCTTATTTCTCCGAACCCAATCCGAGGTTATAACGTTATCCTCTGATACGTTTAATGATAAGATCAAGGAGAAAGACACTGCATGGTTTGTGAAATTCTGCGTTCCCTGGTGCAAGCATTGTAAGAACCTGGGTTCTTTGTGGGATGATTTGGGGAAGGCAATGGAAGGAGAAGATGAAATAGAGGTTGGAGAAGTCGATTGCGGCATGGACAAAGCAGTGTGTTCCAAAGTTGATATTCATTCATATCCTACCTTTAAGGTTTTCTATGATGGCGAGGAAGTAGCCAGATACCAAGGTACAAGAGATGTTGAATCAATGAAAACCTTTGTTTTGGAAGAAGCTGAAAAGGCAGCAGCAAAAGCACTTGAAAGTGACAAAGAATTATAA

Predicted protein sequences of Glyma15g05050

Limit To All Plant Sequences

>Glyma15g05050.3   sequence type=predicted peptide   gene model=Glyma15g05050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRTHTIISLILLSLFLRTQSEVITLSSDTFNDKIKEKDTAWFVKFCVPWCKHCKNLGSLWDDLGKAMEGEDEIEVGEVDCGMDKAVCSKVDIHSYPTFKVFYDGEEVARYQGTRDVESMKTFVLEEAEKAAAKALESDKEL*

>Glyma15g05050.4   sequence type=predicted peptide   gene model=Glyma15g05050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRTHTIISLILLSLFLRTQSEVITLSSDTFNDKIKEKDTAWFVKFCVPWCKHCKNLGSLWDDLGKAMEGEDEIEVGEVDCGMDKAVCSKVDIHSYPTFKVFYDGEEVARYQGTRDVESMKTFVLEEAEKAAAKALESDKEL*

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