SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G29900 | AT | Annotation by Michelle Graham. TAIR10: carbamoyl phosphate synthetase B | chr1:10468164-10471976 FORWARD LENGTH=1187 | SoyBase | E_val: 0 | ISS |
| GO:0006094 | GO-bp | Annotation by Michelle Graham. GO Biological Process: gluconeogenesis | SoyBase | N/A | ISS |
| GO:0006342 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chromatin silencing | SoyBase | N/A | ISS |
| GO:0006526 | GO-bp | Annotation by Michelle Graham. GO Biological Process: arginine biosynthetic process | SoyBase | N/A | ISS |
| GO:0006807 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nitrogen compound metabolic process | SoyBase | N/A | ISS |
| GO:0007010 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cytoskeleton organization | SoyBase | N/A | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0010498 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteasomal protein catabolic process | SoyBase | N/A | ISS |
| GO:0016036 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular response to phosphate starvation | SoyBase | N/A | ISS |
| GO:0051567 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone H3-K9 methylation | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0005951 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: carbamoyl-phosphate synthase complex | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009570 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0004088 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0016874 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ligase activity | SoyBase | N/A | ISS |
| GO:0046872 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: metal ion binding | SoyBase | N/A | ISS |
| KOG0370 | KOG | Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) | JGI | ISS | |
| PTHR11405 | Panther | CARBAMOYLTRANSFERASE RELATED | JGI | ISS | |
| PTHR11405:SF15 | Panther | ORNITHINE CARBAMOYLTRANSFERASE | JGI | ISS | |
| PF00289 | PFAM | Carbamoyl-phosphate synthase L chain, N-terminal domain | JGI | ISS | |
| PF02142 | PFAM | MGS-like domain | JGI | ISS | |
| PF02786 | PFAM | Carbamoyl-phosphate synthase L chain, ATP binding domain | JGI | ISS | |
| PF02787 | PFAM | Carbamoyl-phosphate synthetase large chain, oligomerisation domain | JGI | ISS | |
| UniRef100_G7IU57 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Carbamoyl-phosphate synthase large chain n=1 Tax=Medicago truncatula RepID=G7IU57_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1MDM6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MDM6_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma15g05021 not represented in the dataset |
Glyma15g05021 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma13g40380 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.15g045100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma15g05021.1 sequence type=CDS gene model=Glyma15g05021 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAATGGCCTATTGCATCTCCCAGCTCCCCAAACTCCCACTCCTCCCTTCTCTCCCTCATTCCCGTTCCTCTAAAACCCTCCCTTCACTAAACCACGCCGTTCCCCCCACCCTTCTCCGTGCATGTCCTCCTCCCACCACGCGCCTCAACCCCGCGCGCGTCCGATGCTCCGCCGTCGCCGTCGCCGAACCTCCTGCCCCCAAACTCGGCAAGCGGACCGACATAAAGAAGATCCTGATCCTCGGTGCGGGCCCCATCGTCATCGGCCAAGCGTGCGAGTTCGACTACTCCGGCACCCAAGCGTGCAAGGCCCTCCGTGAGGAAGGGTACGAGGTTGTCCTCATCAACTCCAACCCCGCCACCATCATGACTGATCCCGAAACCGCCGACCGCACCTATATCACCCCCATGACGCCGGACCTCGTGGAGCGCGTCCTCGAATCGGAGCGTCCCGACGCGCTCCTCCCCACCATGGGCGGCCAGACCGCCCTCAACCTCGCTGTCGCCCTCTCCGAGAGCGGCGCCCTCGAAAAATATGGCGTGGAACTCATCGGAGCAAAGCTCGACGCAATCAAGAAGGCTGAGGACAGGGAACTCTTCAAACAGGCCATGAAGAATATCGGGATTAAGACCCCTCCCTCCGGCATTGGCACCACTCTTGATGAGTGTCTCAGCATTGCCAATGATATCGGGGAATATCCGTTAATTGTGCGGCCGGCGTTCACGCTTGGGGGTACCGGCGGCGGAATTGCGTATAACAGAGAAGATTTGCTGGAAATTTGCAAGGCTGGGATTGCTGCTAGCTTGACTAATCAGGTTTTGATTGAGAAGTCTCTGTTGGGGTGGAAGGAGTATGAGCTTGAGGTTATGAGGGACTTGGCTGACAATGTTGTTATCATTTGCTCTATTGAGAATATTGATCCTATGGGGGTGCATACCGGGGATTCGATTACTGTTGCACCGGCGCAGACTCTGACGGATAAGGAGTACCAGAGGCTGAGGGATTATTCGATTGCTATAATTAGAGAGATTGGTGTGGAGTGTGGAGGGTCTAATGTGCAGTTTGCGGTTAATCCCGATAATGGTGAGGTCATGGTCATCGAGATGAACCCCAGAGTTTCCAGGTCTTCGGCTCTGGCGTCGAAGGCTACTGGGTTTCCCATTGCAAAGATGGCGGCAAAGTTGTCTGTGGGGTATTCTTTGGATCAGATACCAAACGATATAACGAAGAAGACACCGGCTAGTTTTGAGCCCTCAATTGATTATGTGGTTACTAAGATTCCACGGTTTGCTTTTGAGAAGTTTCCTGGTTCTAAGCCAATATTGACGACACAGATGAAATCAGTTGGTGAGGCGATGGCTGTAGGGCGAACCTTCCAAGAGTCATTTCAAAAAGCAGTACGCTCTCTAGAGTATGGATACCCTGGATGGGGGTGTTCACAAGTGAAGGAGTTGAACTATGACTTGGAGCAATTGAAGTATAGCCTCCGAGTTCCTAACCCGGAGCGCATTCATGCCATCTATGCTGCAATGAAAAGAGGGATGCAGATTGATGAAATCTTTGAGCTGAGTTACATTGACAAATGGTTTCTCACGCAGCTAAAGGAGCTGGTTGATGTGGAAAGTTTCTTGCTGTCTCACAATTTGTCTGATTTGACAAATATTGATTTCTATGAGGTGAAGAGAAGAGGGTTCAGTGATAAACAGATAGCATTTGCAACTAAATCCACTGAGAAAGAAGTTCGCAATAGGCGGTTGTCTCTAGGTGTCACTCCAGCATATAAGCGAGTAGATACCTGTGCAGCGGAATTTGAAGCTAATACGCCTTATATGTATTCTTCTTATGATTTTGAGTGTGAATCGGCTCCCACTACTAGAAAGAAGGTCTTGATTTTGGGTGGAGGACCAAATAGAATTGGTCAAGGGATTGAGTTTGACTACTGTTGTTGTCATGCATCCTTTGCTCTTCAGGATGCAGGATATGAGACAATCATGGTGAACTCAAACCCCGAGACAGTTTCCACAGATTATGACACTAGTGACCGTCTATACTTTGAACCCTTGACCGTTGAAGATGTTTTGAACATTATTGATTTGGAAAGGCCTGATGGTATCATTGTACAATTTGGTGGTCAAACACCATTGAAGTTATCTCTCCCCTTACAACAATACCTAGATGAACACAAGCCAGCATGTGCTAGTGGGGTTGGTCATGTACGCATTTGGGGAACATCTCCTGATTCCATAGATATTGCTGAGGACCGAGAGAGGTTCAACGTGATGCTTCATGAACTAAAGATTGAACACCCAAAAGGAGGAATTGCTAGGAGTGAAACTGATGCACTTGCCATTGCAGCAGATATTGGATACCCAGTTGTTGTTCGTCCTTCTTATGTTTTGGGTGGTCGAGCAATGGAGATTGTATATAGCGATAATAAACTGGTGACTTACCTTGAAAATGCTGTTGAGGTGGATCCAGAACGCCCTGTATTAATTGACAAGTATTTATCTGATGCCTGTGAGATTGATGTTGATGCACTGGCTGACTCACAAGGTAATGTAGTCATTGGTGGGATAATGGAGCACATTGAACAGGCTGGGATACATTCTGGTGACTCTGCCTGCTCTATTCCCACCAGAACTGTTCCTGCTTCTTGCTTGGAGACAATCAGGTCGTGGACAGTAAACTTGGCTAAACAATTGAATGTTTGTGGGCTCATGAATTGTCAGTATGCAATAACTCCATCAGGGGATGTATTTTTGCTAGAGGCCAACCCTCGAGCTTCTCGTACAGTTCCATTTGTATCAAAAGCAATTGGCCATCCCTTGGCTAAATATGCTTCCCTTGTCATGTCTGGAAAGACCCTCTATGATTTACAGTTTACAAAAGAAGTTATCCCTAAATATGTGTCAGTCAAGGAAGCTGTTCTTCCTTTTTCAAAGTTCCCAGGCTGTGACGTGTTTTTAAGTCCTGAGATGCGAAGTACTGGTGAGGTCATGGGTATTGACCCTTCTTATAATATTGCATTTGCTAAGGCACAAATTGCTGCTGGCCAGAAGTTACCACTTTCTGGTACCGTGTTCCTTAGTTTGAATGACTTAACAAAGCCACATCTTGAGAAGATAGCAAAGGCTTTTGTTGAGAATGGTTTCAAGATTGCTGCTACCAGTGGAACAGCTCATGTTCTTAACTTAGCTAAAATTCCAGCGGAGCGAGTGCTGAAGTTGCATGAAGGGAGGCCTCATGCTGGTGACATGATTGCCAATGGGGACATTCAGCTGATGGTGGTAACCAGTTCAGATGATGCACTTGATCGGATAGATGGTCTGGCCCTGAGAAGGATGGCTTTGGATTACAAGGTTCCTATCGTGACAACAGTTAATGGAGCTCTGGCAACTGCTGAAGCTATAAACAGCTTGAAGGCCAACTCTATCAAAATGATCGCACTTCAGGACTTCATTGATGGTGAATTTAATGAGTGA
>Glyma15g05021.1 sequence type=predicted peptide gene model=Glyma15g05021 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAMAYCISQLPKLPLLPSLPHSRSSKTLPSLNHAVPPTLLRACPPPTTRLNPARVRCSAVAVAEPPAPKLGKRTDIKKILILGAGPIVIGQACEFDYSGTQACKALREEGYEVVLINSNPATIMTDPETADRTYITPMTPDLVERVLESERPDALLPTMGGQTALNLAVALSESGALEKYGVELIGAKLDAIKKAEDRELFKQAMKNIGIKTPPSGIGTTLDECLSIANDIGEYPLIVRPAFTLGGTGGGIAYNREDLLEICKAGIAASLTNQVLIEKSLLGWKEYELEVMRDLADNVVIICSIENIDPMGVHTGDSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPDNGEVMVIEMNPRVSRSSALASKATGFPIAKMAAKLSVGYSLDQIPNDITKKTPASFEPSIDYVVTKIPRFAFEKFPGSKPILTTQMKSVGEAMAVGRTFQESFQKAVRSLEYGYPGWGCSQVKELNYDLEQLKYSLRVPNPERIHAIYAAMKRGMQIDEIFELSYIDKWFLTQLKELVDVESFLLSHNLSDLTNIDFYEVKRRGFSDKQIAFATKSTEKEVRNRRLSLGVTPAYKRVDTCAAEFEANTPYMYSSYDFECESAPTTRKKVLILGGGPNRIGQGIEFDYCCCHASFALQDAGYETIMVNSNPETVSTDYDTSDRLYFEPLTVEDVLNIIDLERPDGIIVQFGGQTPLKLSLPLQQYLDEHKPACASGVGHVRIWGTSPDSIDIAEDRERFNVMLHELKIEHPKGGIARSETDALAIAADIGYPVVVRPSYVLGGRAMEIVYSDNKLVTYLENAVEVDPERPVLIDKYLSDACEIDVDALADSQGNVVIGGIMEHIEQAGIHSGDSACSIPTRTVPASCLETIRSWTVNLAKQLNVCGLMNCQYAITPSGDVFLLEANPRASRTVPFVSKAIGHPLAKYASLVMSGKTLYDLQFTKEVIPKYVSVKEAVLPFSKFPGCDVFLSPEMRSTGEVMGIDPSYNIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLEKIAKAFVENGFKIAATSGTAHVLNLAKIPAERVLKLHEGRPHAGDMIANGDIQLMVVTSSDDALDRIDGLALRRMALDYKVPIVTTVNGALATAEAINSLKANSIKMIALQDFIDGEFNE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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