SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G28520 | AT | Annotation by Michelle Graham. TAIR10: vacuolar proton ATPase A1 | chr2:12210026-12215532 FORWARD LENGTH=817 | SoyBase | E_val: 0 | ISS |
| GO:0070070 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proton-transporting V-type ATPase complex assembly | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005768 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endosome | SoyBase | N/A | ISS |
| GO:0005773 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuole | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0005802 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network | SoyBase | N/A | ISS |
| GO:0012510 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network transport vesicle membrane | SoyBase | N/A | ISS |
| GO:0033177 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: proton-transporting two-sector ATPase complex, proton-transporting domain | SoyBase | N/A | ISS |
| GO:0015078 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrogen ion transmembrane transporter activity | SoyBase | N/A | ISS |
| GO:0016887 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATPase activity | SoyBase | N/A | ISS |
| KOG2189 | KOG | Vacuolar H+-ATPase V0 sector, subunit a | JGI | ISS | |
| PTHR11629 | Panther | VACUOLAR PROTON ATPASES | JGI | ISS | |
| PTHR11629:SF11 | Panther | VACUOLAR PROTON ATPASE | JGI | ISS | |
| PF01496 | PFAM | V-type ATPase 116kDa subunit family | JGI | ISS | |
| UniRef100_G7IU50 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: V-type proton ATPase 116 kDa subunit a isoform n=1 Tax=Medicago truncatula RepID=G7IU50_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1MDM2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MDM2_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma15g04971 not represented in the dataset |
Glyma15g04971 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma13g40430 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.15g044700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma15g04971.1 sequence type=CDS gene model=Glyma15g04971 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGAAAATGGAGCAGTTCATTGATAACTTGCCGCCGATGGATCTGATGCGATCGGAGAAGATGACCTTCGTTCAGCTCATCATCCCCGTCGAGTCCGCGCACCGCGCCATCTCCTATTTAGGTGAACTCGGCCTTCTCCAATTCCGCGACTTAAATGCTGATAAAAGCCCCTTTCAGAGAACATTTGTCAATCAGGTAAAGCGATGTGCAGAAATGTCAAGAAAGCTTCGATTCTTCAAGGATCAAATCAGTAAAGCTGGCCTAATGTCTTCTTCTCGTACTGTATTGCAACCAGATATAGACTTGGAGGATTTAGAGATACAACTTGCTGAACATGAACATGAGCTGATTGAAATGAACTCTAACAGTGACAAACTTCAGCAATCATATAATGAACTCCAGGAATTCAAGATTGTATTACAAAAGGCATGTGGTTTTCTTGTTTCCAAACATAGCCTTGCGGTTTCAGATGAAAGAGAACTACAAGAGAATGTATATTCAAATGATGCCTATGTTGAGACAGGATCTTTGCTTGAACAGGAAATGAGGCCTCAGTCATCAAACTCGTCTGGTTTAAGATTTATCAGTGGGATTATTTGTAAATCCAAGGTTCTTAGGTTTGAAAGGATGTTGTTTCGTGCTACGAGAGGCAATATGCTTTTCAATCAGGCACCGGCTGATGAACTAATCATGGATCCTGTTTCAGCCGAGATGATTGAAAAAACAGTGTTCGTTGTGTTTTTCTCTGGGGAACAGGCAAGAACCAAGATTCTGAAAATTTGTGAGGCATTTGGTGCAAATTGTTATCCTGTTCCTGAAGATATTAGTAAGCAGAGGGAAATAACTAGAGAGGTTTCATCACGTCTTACGGACTTAGAGGCAACTTTGGAAGCTGGGATTAGGCACCGGAACAAGGCTCTAGCTTCTGTTGCAGACCATCTAGCAAAATGGATAAACATGGTAAGAAGAGAGAAGGCTGTGTATGATACACTGAACATGTTAAACTTTGATGTCACAAAAAAATGTCTTGTTGGAGAGGGCTGGTGTCCTCTGTTTGCAAAAACACAGATGCAGGAGGTACTGCAACGTGCAACTTTTGATAGCAATTCTCAAGTTGGCATAATCTTCCATCCAATGGATGCAGTGGAGTCACCACCTACATATTTTAGGACCAACACTTTCACAAATCCATATCAAGAAATTGTTGATGCATATGGTGTTGCAAGATACCAAGAAGCAAATCCTGCAGTTTACACAACTATTATATTCCCTTTCCTATTTGCTTTGATGTTTGGGGACTGGGGTCATGGAATTTGCCTATTGCTAGGAGCATTGGTTCTTATAGCACGTCAAAACAAGCTCAGCACACAGAAACTTGGAAGCTTTATGGAGATGCTATTTGGTGGGCGCTATGTGCTTCTTCTAATGGCACTGTTTTCAATCTATTGTGGCTTAATCTACAATGAATTCTTTTCTGTTCCCTTTCACATATTTGGTGCATCGGCTTACAAATGCCGTGATAGTTCATGCAGGGATGCACATACTATTGGGTTAATCAAATACCAAGATCCATACCCGTTTGGTGTGGATCCCAGCTGGCGTGGAAGTCGATCAGAATTGTCTTTCCTAAACTCTTTGAAGATGAAGATGTCCATTCTGTTTGGTGTGGCACATATGAACTTAGGAATTATATTGAGTTATTTTAATGCTCATTTCTTTCAAAACTCACTGGATATAAGGTACCAGTTTGTGCCACAGATGATTTTCCTTAACAGTCTATTTGGGTATCTTTCCGTTCTCATTGTTATCAAGTGGTGTACTGGCTCTCAAGCAGACCTTTATCATGTAATGATATACATGTTTTTAAGCCCCACAGACAATCTTGGCGAGAATCAGTTGTTCTGGGGCCAAAGACCTCTTCAAATTGTGTTATTGCTTTTGGCTGTAATTGCAGTTCCGTGGATGCTCTTTCCAAAACCTTTTATACTAAAAAAGCTTCATACTGAGAGGTTTCAAGGTCGTAGTTATGGTATACTGAATACCTCTGAGGTGGATCTTGAGGCTGAACCTGATTCTGCCAGACAACATCATGAAGAATTCAATTTCAGTGAGGTCTTTGTTCACCAAATGATCCACGCCATTGAATTTGTTCTAGGTTCAGTTTCTAATACAGCATCATATCTTCGTCTTTGGGCACTAAGTTTGGCTCACTCAGAACTTTCTACTGTTTTCTATGAGAAAGTCCTGCTTCTTGCTTGGGGGTATGACAATCTTGTCATTCGGTTGATAGGGCTAACCGTTTTTGCCTTTGCAACTGCCTTTATACTACTAATGATGGAGAGTCTTAGTGCTTTTCTTCATGCCCTGAGGCTTCACTGGGTAGAATTTCAAAATAAATTCTACCATGGTGATGGCTACAAGTTCAGGCCTTTTTCATTTGCCTCCTTAACAGAGGATGACGATTGA
>Glyma15g04971.1 sequence type=predicted peptide gene model=Glyma15g04971 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEKMEQFIDNLPPMDLMRSEKMTFVQLIIPVESAHRAISYLGELGLLQFRDLNADKSPFQRTFVNQVKRCAEMSRKLRFFKDQISKAGLMSSSRTVLQPDIDLEDLEIQLAEHEHELIEMNSNSDKLQQSYNELQEFKIVLQKACGFLVSKHSLAVSDERELQENVYSNDAYVETGSLLEQEMRPQSSNSSGLRFISGIICKSKVLRFERMLFRATRGNMLFNQAPADELIMDPVSAEMIEKTVFVVFFSGEQARTKILKICEAFGANCYPVPEDISKQREITREVSSRLTDLEATLEAGIRHRNKALASVADHLAKWINMVRREKAVYDTLNMLNFDVTKKCLVGEGWCPLFAKTQMQEVLQRATFDSNSQVGIIFHPMDAVESPPTYFRTNTFTNPYQEIVDAYGVARYQEANPAVYTTIIFPFLFALMFGDWGHGICLLLGALVLIARQNKLSTQKLGSFMEMLFGGRYVLLLMALFSIYCGLIYNEFFSVPFHIFGASAYKCRDSSCRDAHTIGLIKYQDPYPFGVDPSWRGSRSELSFLNSLKMKMSILFGVAHMNLGIILSYFNAHFFQNSLDIRYQFVPQMIFLNSLFGYLSVLIVIKWCTGSQADLYHVMIYMFLSPTDNLGENQLFWGQRPLQIVLLLLAVIAVPWMLFPKPFILKKLHTERFQGRSYGILNTSEVDLEAEPDSARQHHEEFNFSEVFVHQMIHAIEFVLGSVSNTASYLRLWALSLAHSELSTVFYEKVLLLAWGYDNLVIRLIGLTVFAFATAFILLMMESLSAFLHALRLHWVEFQNKFYHGDGYKFRPFSFASLTEDDD*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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