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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G45620 | AT | Annotation by Michelle Graham. TAIR10: Transducin/WD40 repeat-like superfamily protein | chr3:16745918-16747993 FORWARD LENGTH=481 | SoyBase | E_val: 0 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0009862 | GO-bp | Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0080008 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: CUL4-RING ubiquitin ligase complex | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| KOG0265 | KOG | U5 snRNP-specific protein-like factor and related proteins | JGI | ISS | |
| KOG1334 | KOG | WD40 repeat protein | JGI | ISS | |
| PTHR15574 | Panther | WD REPEAT DOMAIN-CONTAINING FAMILY | JGI | ISS | |
| PTHR15574:SF16 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00400 | PFAM | WD domain, G-beta repeat | JGI | ISS | |
| UniRef100_G7IU49 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: DDB1-and CUL4-associated factor n=1 Tax=Medicago truncatula RepID=G7IU49_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233B311 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233B311 related cluster n=1 Tax=unknown RepID=UPI000233B311 | SoyBase | E_val: 0 | ISS |
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Glyma15g04960 not represented in the dataset |
Glyma15g04960 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma13g40440 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.15g044600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma15g04960.2 sequence type=transcript gene model=Glyma15g04960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CCGAAAGGGCTAAAATTAAAATCACAATCTCTGTCTACGCGATTGCATTGCATATGACGACCTAAGTTAGCGTCTTCCTCACTCATAAAGGAATCCACTTCAACTTCAACAAGTAGACGCAGCAGACTCTGAAAATTTCATCGAAATGGAAAATCTCCATAACCATCGGGGAATTACTAATTCTAACTCTTGTCCTCCACGTGGCTTTACAGATATTTTCAGAAGAGAGTTAGGTTTGTCTCATCCCAACAGTTTCGCGCGTCGCTTTTCAGCTTCCGAGGTCCTTGTGAAGAGCTTGGATTTATATGGGAAGTTGGATGGTCACGAAGGGTGTGTGAATGCAGTGGAGTTTAACTCCACTGGTGACCTTCTGGTCTCAGGTTCTGATGACCGACAAGTTATGTTTTGGAATTGGGCATCCAAAACTAGATTGTTTGCATACCCTTCTGGCCACACAGACAACATATTCCAGACAAAGATTATTCCATTCACCGATGACTGCCGAATTGTAACTTCTGCCGGTGATGGCCAGAACATCAGATGGAGGGGTTGACTCTAGCAGAATGGACTAGTCTCATAGAACATGGTGAATCAAGATTTGAATCCCTACCAGGACAGGTAAGGCTTGGCCTTCTCTGGGAGGATGGTAGAGTTGACACTACAATGTTGGGGAAGCACCATGGTTGTGTATACAAGCTTGCTGTGGAGCCTGGAAGTGCCCACATATTTTACAGTTCTGGTGAAGATGGATTTATTCAACATTTTGATTTGCGAAGTAATTCTGCTACGAAACTTTTCTGTTGTTCCTCGTCAATAGGAAACAATAAACAGACTCTAAGCAAAGTAGGGTTGAATTCCATTGTGATTGACCCTAGAAATCCATATTACTTTGCTATCGGTGGATCTGATGAATATGCACGTGTTTATGACATTAGAAAATGCCAGTGGGGTTCAGCAAGAAATTCAGATCGACCTGTTAACACATTTTGCCCTTGTCACTTAATTGGTTCAAATAATGTCCATATCACTGGATTGGCTTACTCAAGCTTTAGTGAACTCCTTGTTTCTTATAATGATGAGCTCATCTATCTGTTTGAAAAGAATGTGCACTCAGATTCCTCACCTTCATCTGCTACATCTGAGGATCCGAAGAATATTCATGAGGCCCAAGTTTACTCAGGCCACAGAAATGCACAGACAATTAAAGGAGTGAATTTTTTTGGCCCAAATGATGAATACATCATGAGCGGTTCTGATTGTGGCCATATATTCATCTGGAAGAAGAAGGAAGCTAAGCTGGTGAGATTAATGGTAGGTGATCAACATGTTGTAAATCAACTTGAGGCCCATCCACATATACCTATTCTCGCTACTTGTGGTATAGAAAAAAATGTGAAAATCTGGGCTCCTCTAGGGAATGATATACCTCCACTTCCTGCGAATGTGAAAGAGATAATGGAGACAAACAGACAGGGCAGAGAAGACCGATCACGGGTAACCCTTACTCCTGATGTTATAATGCATGTTCTTCGCCTGCAGAGGCGGCAGACATTGGCGTATATTGAAAGAAGACATAATAGGGCAGATATTGTAAGTGATGAAGAAGATGCAGAGGGCTACCTTTTAGGATTCTCAGATGGTGATGCCTCTTCTGAAGAGGATTCTCCTGGAAATTCCAGAGATTGCAACATTAGCTAGAGCTTAAAGAAGTGGGTTTGGTTGCTTTGGCTGACTAATTCCATTGAAACACTAAATGATGTTAGCTTCACTGTTTTCCACTAAGCAGTACCATATACATGTTTGAAACGTGTGCTAGTAAACACCATTAGGAAAACAGTGTGCAGAGCTGTAAAATCTGGGATTGTTCTAGTTGATATTCAGATATTATGACGTGTACAGGTATAAAATATGTATAAATCTTATTTTTAATCAATTATGAGCTTCACTTATAATTTTTTATTT
>Glyma15g04960.1 sequence type=CDS gene model=Glyma15g04960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAAAATCTCCATAACCATCGGGGAATTACTAATTCTAACTCTTGTCCTCCACGTGGCTTTACAGATATTTTCAGAAGAGAGTTAGGTTTGTCTCATCCCAACAGTTTCGCGCGTCGCTTTTCAGCTTCCGAGGTCCTTGTGAAGAGCTTGGATTTATATGGGAAGTTGGATGGTCACGAAGGGTGTGTGAATGCAGTGGAGTTTAACTCCACTGGTGACCTTCTGGTCTCAGGTTCTGATGACCGACAAGTTATGTTTTGGAATTGGGCATCCAAAACTAGATTGTTTGCATACCCTTCTGGCCACACAGACAACATATTCCAGACAAAGATTATTCCATTCACCGATGACTGCCGAATTGTAACTTCTGCCGGTGATGGCCAGGTAAGGCTTGGCCTTCTCTGGGAGGATGGTAGAGTTGACACTACAATGTTGGGGAAGCACCATGGTTGTGTATACAAGCTTGCTGTGGAGCCTGGAAGTGCCCACATATTTTACAGTTCTGGTGAAGATGGATTTATTCAACATTTTGATTTGCGAAGTAATTCTGCTACGAAACTTTTCTGTTGTTCCTCGTCAATAGGAAACAATAAACAGACTCTAAGCAAAGTAGGGTTGAATTCCATTGTGATTGACCCTAGAAATCCATATTACTTTGCTATCGGTGGATCTGATGAATATGCACGTGTTTATGACATTAGAAAATGCCAGTGGGGTTCAGCAAGAAATTCAGATCGACCTGTTAACACATTTTGCCCTTGTCACTTAATTGGTTCAAATAATGTCCATATCACTGGATTGGCTTACTCAAGCTTTAGTGAACTCCTTGTTTCTTATAATGATGAGCTCATCTATCTGTTTGAAAAGAATGTGCACTCAGATTCCTCACCTTCATCTGCTACATCTGAGGATCCGAAGAATATTCATGAGGCCCAAGTTTACTCAGGCCACAGAAATGCACAGACAATTAAAGGAGTGAATTTTTTTGGCCCAAATGATGAATACATCATGAGCGGTTCTGATTGTGGCCATATATTCATCTGGAAGAAGAAGGAAGCTAAGCTGGTGAGATTAATGGTAGGTGATCAACATGTTGTAAATCAACTTGAGGCCCATCCACATATACCTATTCTCGCTACTTGTGGTATAGAAAAAAATGTGAAAATCTGGGCTCCTCTAGGGAATGATATACCTCCACTTCCTGCGAATGTGAAAGAGATAATGGAGACAAACAGACAGGGCAGAGAAGACCGATCACGGGTAACCCTTACTCCTGATGTTATAATGCATGTTCTTCGCCTGCAGAGGCGGCAGACATTGGCGTATATTGAAAGAAGACATAATAGGGCAGATATTGTAAGTGATGAAGAAGATGCAGAGGGCTACCTTTTAGGATTCTCAGATGGTGATGCCTCTTCTGAAGAGGATTCTCCTGGAAATTCCAGAGATTGCAACATTAGCTAG >Glyma15g04960.2 sequence type=CDS gene model=Glyma15g04960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGGGGTTGACTCTAGCAGAATGGACTAGTCTCATAGAACATGGTGAATCAAGATTTGAATCCCTACCAGGACAGGTAAGGCTTGGCCTTCTCTGGGAGGATGGTAGAGTTGACACTACAATGTTGGGGAAGCACCATGGTTGTGTATACAAGCTTGCTGTGGAGCCTGGAAGTGCCCACATATTTTACAGTTCTGGTGAAGATGGATTTATTCAACATTTTGATTTGCGAAGTAATTCTGCTACGAAACTTTTCTGTTGTTCCTCGTCAATAGGAAACAATAAACAGACTCTAAGCAAAGTAGGGTTGAATTCCATTGTGATTGACCCTAGAAATCCATATTACTTTGCTATCGGTGGATCTGATGAATATGCACGTGTTTATGACATTAGAAAATGCCAGTGGGGTTCAGCAAGAAATTCAGATCGACCTGTTAACACATTTTGCCCTTGTCACTTAATTGGTTCAAATAATGTCCATATCACTGGATTGGCTTACTCAAGCTTTAGTGAACTCCTTGTTTCTTATAATGATGAGCTCATCTATCTGTTTGAAAAGAATGTGCACTCAGATTCCTCACCTTCATCTGCTACATCTGAGGATCCGAAGAATATTCATGAGGCCCAAGTTTACTCAGGCCACAGAAATGCACAGACAATTAAAGGAGTGAATTTTTTTGGCCCAAATGATGAATACATCATGAGCGGTTCTGATTGTGGCCATATATTCATCTGGAAGAAGAAGGAAGCTAAGCTGGTGAGATTAATGGTAGGTGATCAACATGTTGTAAATCAACTTGAGGCCCATCCACATATACCTATTCTCGCTACTTGTGGTATAGAAAAAAATGTGAAAATCTGGGCTCCTCTAGGGAATGATATACCTCCACTTCCTGCGAATGTGAAAGAGATAATGGAGACAAACAGACAGGGCAGAGAAGACCGATCACGGGTAACCCTTACTCCTGATGTTATAATGCATGTTCTTCGCCTGCAGAGGCGGCAGACATTGGCGTATATTGAAAGAAGACATAATAGGGCAGATATTGTAAGTGATGAAGAAGATGCAGAGGGCTACCTTTTAGGATTCTCAGATGGTGATGCCTCTTCTGAAGAGGATTCTCCTGGAAATTCCAGAGATTGCAACATTAGCTAG
>Glyma15g04960.1 sequence type=predicted peptide gene model=Glyma15g04960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MENLHNHRGITNSNSCPPRGFTDIFRRELGLSHPNSFARRFSASEVLVKSLDLYGKLDGHEGCVNAVEFNSTGDLLVSGSDDRQVMFWNWASKTRLFAYPSGHTDNIFQTKIIPFTDDCRIVTSAGDGQVRLGLLWEDGRVDTTMLGKHHGCVYKLAVEPGSAHIFYSSGEDGFIQHFDLRSNSATKLFCCSSSIGNNKQTLSKVGLNSIVIDPRNPYYFAIGGSDEYARVYDIRKCQWGSARNSDRPVNTFCPCHLIGSNNVHITGLAYSSFSELLVSYNDELIYLFEKNVHSDSSPSSATSEDPKNIHEAQVYSGHRNAQTIKGVNFFGPNDEYIMSGSDCGHIFIWKKKEAKLVRLMVGDQHVVNQLEAHPHIPILATCGIEKNVKIWAPLGNDIPPLPANVKEIMETNRQGREDRSRVTLTPDVIMHVLRLQRRQTLAYIERRHNRADIVSDEEDAEGYLLGFSDGDASSEEDSPGNSRDCNIS* >Glyma15g04960.2 sequence type=predicted peptide gene model=Glyma15g04960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEGLTLAEWTSLIEHGESRFESLPGQVRLGLLWEDGRVDTTMLGKHHGCVYKLAVEPGSAHIFYSSGEDGFIQHFDLRSNSATKLFCCSSSIGNNKQTLSKVGLNSIVIDPRNPYYFAIGGSDEYARVYDIRKCQWGSARNSDRPVNTFCPCHLIGSNNVHITGLAYSSFSELLVSYNDELIYLFEKNVHSDSSPSSATSEDPKNIHEAQVYSGHRNAQTIKGVNFFGPNDEYIMSGSDCGHIFIWKKKEAKLVRLMVGDQHVVNQLEAHPHIPILATCGIEKNVKIWAPLGNDIPPLPANVKEIMETNRQGREDRSRVTLTPDVIMHVLRLQRRQTLAYIERRHNRADIVSDEEDAEGYLLGFSDGDASSEEDSPGNSRDCNIS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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