SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G28560 | AT | Annotation by Michelle Graham. TAIR10: DNA repair (Rad51) family protein | chr2:12237052-12239086 REVERSE LENGTH=371 | SoyBase | E_val: 0 | ISS |
| GO:0006259 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA metabolic process | SoyBase | N/A | ISS |
| GO:0006281 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA repair | SoyBase | N/A | ISS |
| GO:0006310 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA recombination | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0000150 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: recombinase activity | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0008094 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA-dependent ATPase activity | SoyBase | N/A | ISS |
| GO:0017111 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity | SoyBase | N/A | ISS |
| KOG1433 | KOG | DNA repair protein RAD51/RHP55 | JGI | ISS | |
| PTHR22942 | Panther | RECA/RAD51/RADA DNA STRAND-PAIRING FAMILY MEMBER | JGI | ISS | |
| PTHR22942:SF15 | Panther | DNA REPAIR PROTEIN RAD51 HOMOLOG 2, R51H2 | JGI | ISS | |
| PF08423 | PFAM | Rad51 | JGI | ISS | |
| UniRef100_G7IU37 | UniRef | Annotation by Michelle Graham. Best UniRef hit: DNA repair protein RAD51-like protein n=1 Tax=Medicago truncatula RepID=G7IU37_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_G7IU37 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: DNA repair protein RAD51-like protein n=1 Tax=Medicago truncatula RepID=G7IU37_MEDTR | SoyBase | E_val: 0 | ISS |
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Glyma15g04920 not represented in the dataset |
Glyma15g04920 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.15g044300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma15g04920.1 sequence type=CDS gene model=Glyma15g04920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGAACAAGCTCATCAACCAGATGGGATTGCCCAAATCCATTGTTAATATCTTCACTGCTCGCAACATTATCACCGCCAAGGATGCATTATCTCACACTGAATTTGAGTTGATGGAATTGCTGGACGTTGGGAAGGAAGAAGTAACATCCGCAATGGCTCATGTTAGTGAAGTCGTGTGTCCACCGTGCCAAACTGCATTACTTCTGTTGGAGCAGCGAGTACTCAATGAGAGTTTGGCCGGTCATCTTTCCACTCGTTTGAAAGGTTTGGATGAAGCCTTGTGCGGTGGTATACCGTTTGGTGTTTTGACAGAGTTGGTTGGTCCAGCAGGAATTGGCAAAACTCAGTTTTGCTTGAAGCTCTCACTGCTGGCTTCATTGCCCACAAATTGTGGAGGCTTAGATGGCCGTGTGATATATATCGATGTTGAATCCAAATTTAGGTCAAAAAGATTGATAGAGATTGGAATAAACAGTTTTCCTGAGATATTTCTCAAGAAGGGAATGGCACAGGAGATGGCCGGTAGAATTCTGATTTTGCATCCTACATCACTTTCTGAATTCGCTGAGAGTTTGCACCAGATCAGAGTATCACTCCTCCAACAACAAGTGAAATTGCTCATCATTGATAGCATGGCTGCTCTAGTTTTAGGTGAACATGATAGTGAGGCTTCTAGACAACAAGCATTGGGTTGGCATGTTTCTTTTATCAAGTCACTTGCTGAATTTTCACGAATTCCAGTTGTATTGACTAATCAAGTAAGATCTCAAATTGGTGATGAATCTCGCATGTATTCCTTTCAAGCACAAAGCCACTCTATAATAAAAGATAATCCTGCCACATATGATTCTCATCTGGTTGCTGCTTTGGGAATTAACTGGGCTCATGCTGTGACCATCCGCCTTGTACTTGAAGCCAGATCAGGTCAAAGGTTTATTAAGTTAGCAAAATCTCCCATATCAGCTCCTCTGGCTTTCCCTTTCAAGATAACTTCATCAGGGTTGGTTCTGCTGGATGATGAGGGGATAGAAATGAAAGGGCCAGAAATAAACACTATTCATTGCCAAGGTTTGTCATTGAGCACTCTTGCCGTTAGCTCCGCTGAATATATTTTGCGTACAAAAAATGCTTAA
>Glyma15g04920.1 sequence type=predicted peptide gene model=Glyma15g04920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MANKLINQMGLPKSIVNIFTARNIITAKDALSHTEFELMELLDVGKEEVTSAMAHVSEVVCPPCQTALLLLEQRVLNESLAGHLSTRLKGLDEALCGGIPFGVLTELVGPAGIGKTQFCLKLSLLASLPTNCGGLDGRVIYIDVESKFRSKRLIEIGINSFPEIFLKKGMAQEMAGRILILHPTSLSEFAESLHQIRVSLLQQQVKLLIIDSMAALVLGEHDSEASRQQALGWHVSFIKSLAEFSRIPVVLTNQVRSQIGDESRMYSFQAQSHSIIKDNPATYDSHLVAALGINWAHAVTIRLVLEARSGQRFIKLAKSPISAPLAFPFKITSSGLVLLDDEGIEMKGPEINTIHCQGLSLSTLAVSSAEYILRTKNA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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