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Report for Sequence Feature Glyma15g04805

Feature Type:gene_model
Chromosome:Gm15
Start:3362279
stop:3372518
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma15g04805
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G59970AT Annotation by Michelle Graham. TAIR10: Histone superfamily protein | chr5:24146352-24146663 REVERSE LENGTH=103 SoyBaseE_val: 4.00E-68ISS
GO:0006334GO-bp Annotation by Michelle Graham. GO Biological Process: nucleosome assembly SoyBaseN/AISS
GO:0000786GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleosome SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005773GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuole SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
KOG3467 KOG Histone H4 JGI ISS
PTHR10484Panther HISTONE H4 JGI ISS
PF00125PFAM Core histone H2A/H2B/H3/H4 JGI ISS
UniRef100_G3HPV7UniRef Annotation by Michelle Graham. Most informative UniRef hit: Histone H4 n=1 Tax=Cricetulus griseus RepID=G3HPV7_CRIGR SoyBaseE_val: 3.00E-67ISS
UniRef100_UPI000233B309UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233B309 related cluster n=1 Tax=unknown RepID=UPI000233B309 SoyBaseE_val: 4.00E-91ISS

Expression Patterns of Glyma15g04805
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g04805 not represented in the dataset
Glyma15g04805 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma15g04805 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma15g04805
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma15g04805
>Glyma15g04805.2   sequence type=transcript   gene model=Glyma15g04805   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCCGAAAAAAGATTAACCGCGGGACCGAACCCGCCAACACAAAATTCACTTTTTCATTTAACGGCTCAAGCCACGTCACCGATCCAAATGAAGTCTCTTCTCCCATCTCCATCGTACATAGCAACCAAATCAACGGTCCAGAACGCGCTTGAAAAACCGGCATCCGCATCCGAACCTGAATCCTATCACAACACTAACACAGATTTTGATTCGATTCGATTCGATTCAGTCGAGGTTTTAAGCAGCAGCAAGATGTCTGGGCGTGGAAAGGGAGGAAAGGGATTGGGAAAAGGAGGAGCAAAACGACATCGTAAGGTGCTCCGCGACAACATTCAGGGAATTACGAAGCCAGCGATTCGTCGTTTGGCTCGCAGGGGTGGCGTGAAGCGTATCAGCGGTTTGATCTACGAGGAGACTCGCGGTGTTCTCAAGATCTTCTTGGAGAATGTCATCCGTGACGCCGTTACTTACACGGAGCACGCTAGGAGGAAGACCGTTACGGCTATGGACGTTGTTTATGCGCTTAAGAGGCAGGGAAGGACCCTCTACGGATTTGGTGGTTAGGGTTTTTGCTTGATTTTCCTCGCCAGGGAAAAGTCTTGCTGTCAAGAAAAACAAACGAGGCATGGATTGGGGTAGTTTTTATTTTATGTT
Coding sequences of Glyma15g04805
>Glyma15g04805.1   sequence type=CDS   gene model=Glyma15g04805   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCCGAAAAAAGATTAACCGCGGGACCGAACCCGCCAACACAAAATTCACTTTTTCATTTAACGGCTCAAGCCACGTCACCGATCCAAATGAAGTCTCTTCTCCCATCTCCATCGTACATAGCAACCAAATCAACGGTCCAGAACGCGCTTGAAAAACCGGCATCCGCATCCGAACCTGAATCCTATCACAACACTAACACAGATTTTGATTCGATTCGATTCGATTCAGTCGAGGTTTTAAGCAGCAGCAAGATGTCTGGGCGTGGAAAGGGAGGAAAGGGATTGGGAAAAGGAGGAGCAAAACGACATCGTAAGGTGCTCCGCGACAACATTCAGGGAATTACGAAGCCAGCGATTCGTCGTTTGGCTCGCAGGGGTGGCGTGAAGCGTATCAGCGGTTTGATCTACGAGGAGACTCGCGGTGTTCTCAAGATCTTCTTGGAGAATGTCATCCGTGACGCCGTTACTTACACGGAGCACGCTAGGAGGAAGACCGTTACGGCTATGGACGTTGTTTATGCGCTTAAGAGGCAGGGAAGGACCCTCTACGGATTTGGTGGTTAG

>Glyma15g04805.2   sequence type=CDS   gene model=Glyma15g04805   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCCGAAAAAAGATTAACCGCGGGACCGAACCCGCCAACACAAAATTCACTTTTTCATTTAACGGCTCAAGCCACGTCACCGATCCAAATGAAGTCTCTTCTCCCATCTCCATCGTACATAGCAACCAAATCAACGGTCCAGAACGCGCTTGAAAAACCGGCATCCGCATCCGAACCTGAATCCTATCACAACACTAACACAGATTTTGATTCGATTCGATTCGATTCAGTCGAGGTTTTAAGCAGCAGCAAGATGTCTGGGCGTGGAAAGGGAGGAAAGGGATTGGGAAAAGGAGGAGCAAAACGACATCGTAAGGTGCTCCGCGACAACATTCAGGGAATTACGAAGCCAGCGATTCGTCGTTTGGCTCGCAGGGGTGGCGTGAAGCGTATCAGCGGTTTGATCTACGAGGAGACTCGCGGTGTTCTCAAGATCTTCTTGGAGAATGTCATCCGTGACGCCGTTACTTACACGGAGCACGCTAGGAGGAAGACCGTTACGGCTATGGACGTTGTTTATGCGCTTAAGAGGCAGGGAAGGACCCTCTACGGATTTGGTGGTTAG
Predicted protein sequences of Glyma15g04805
>Glyma15g04805.1   sequence type=predicted peptide   gene model=Glyma15g04805   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPEKRLTAGPNPPTQNSLFHLTAQATSPIQMKSLLPSPSYIATKSTVQNALEKPASASEPESYHNTNTDFDSIRFDSVEVLSSSKMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG*

>Glyma15g04805.2   sequence type=predicted peptide   gene model=Glyma15g04805   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPEKRLTAGPNPPTQNSLFHLTAQATSPIQMKSLLPSPSYIATKSTVQNALEKPASASEPESYHNTNTDFDSIRFDSVEVLSSSKMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG*






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