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Report for Sequence Feature Glyma15g04790

Feature Type:gene_model
Chromosome:Gm15
Start:3363020
stop:3366590
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G46290AT Annotation by Michelle Graham. TAIR10: hercules receptor kinase 1 | chr3:17013009-17015501 FORWARD LENGTH=830 SoyBaseE_val: 0ISS
GO:0006468GO-bp Annotation by Michelle Graham. GO Biological Process: protein phosphorylation SoyBaseN/AISS
GO:0009741GO-bp Annotation by Michelle Graham. GO Biological Process: response to brassinosteroid stimulus SoyBaseN/AISS
GO:0009742GO-bp Annotation by Michelle Graham. GO Biological Process: brassinosteroid mediated signaling pathway SoyBaseN/AISS
GO:0009791GO-bp Annotation by Michelle Graham. GO Biological Process: post-embryonic development SoyBaseN/AISS
GO:0009826GO-bp Annotation by Michelle Graham. GO Biological Process: unidimensional cell growth SoyBaseN/AISS
GO:0051510GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of unidimensional cell growth SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0009506GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma SoyBaseN/AISS
GO:0004672GO-mf Annotation by Michelle Graham. GO Molecular Function: protein kinase activity SoyBaseN/AISS
GO:0004674GO-mf Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0016301GO-mf Annotation by Michelle Graham. GO Molecular Function: kinase activity SoyBaseN/AISS
GO:0016772GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups SoyBaseN/AISS
KOG1187 KOG Serine/threonine protein kinase JGI ISS
PTHR24420Panther FAMILY NOT NAMED JGI ISS
PTHR24420:SF785Panther JGI ISS
PF07714PFAM Protein tyrosine kinase JGI ISS
PF11721PFAM Di-glucose binding within endoplasmic reticulum JGI ISS
UniRef100_C6ZRT9UniRef Annotation by Michelle Graham. Best UniRef hit: Protein kinase n=1 Tax=Glycine max RepID=C6ZRT9_SOYBN SoyBaseE_val: 0ISS
UniRef100_C6ZRT9UniRef Annotation by Michelle Graham. Most informative UniRef hit: Protein kinase n=1 Tax=Glycine max RepID=C6ZRT9_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma13g40640 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.15g042900 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma15g04790.1   sequence type=CDS   gene model=Glyma15g04790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACTGATTGGAGAAATATTGGTTTCTTTATATGTGTTTTATCAATCTTTCCGCTTGTATGCTTCTGTGCCACCTTTGTTCCAGTAGATAATTATCTTATAGACTGTGGAGCAACTACGAGTACTTCAGTAGGTACACGCAATTTCATAGCAGATAACAAGGATCTCCTTTCCACACAAAAAGATATTGTTGCCACTACCTCCTCAAAATCAGCTACTTCTTCCTCTGATGATTCATCGCTCTATCAAACTGCAAGAGTCTTCACTGCTTCCTCGAAGTACACTTTTAAAATTAATCAAAAGGGGAGGCACTGGATCCGTCTCTATTTCCTTCCATTCGCTTATGAAAAGTACAATTTGCGTGCTGCAGATTTCACTGTTTCCACCCAAAACCATGTCCTTTTCAGAAGCCTCAACATGCAGAAAGATCCTGTGATGAAGGAGTACTCAGTGAATGTGACCTCCGACTCCCTTGTTCTTACCTTTGCCCCTTCAGGAAGTTCCATTGCTTTTGTGAATGCCATTGAAGTTGTTTCTGTCCCTGATGACCTAATTGTTGATGATGGTTTTGCCTTAGATCCATCAGTAACCTCTTCTGGGTTGGTGACACAAGCACTTGAGACAGTTTGGAGGGTTAACATGGGTGGTCCTACTGTGACCCCTATAAATGACACCCTTCAAAGAACTTGGGTTCCTGATCAAAGTTTCCTTTTGCAATCCAACCTTGCCTCATTTTCTTCCAATATTAAGGGTGTTAAGTATGAGAACCATGGGCAAGCAACAGAAAACACTGCTCCGCCTACCGTTTATGGGACTCTCACACAGATGAACTCGACCTATGATCCCCGTAATATTTTCAATGTAACATGGCAGTTTGATGTAAGTCCCGGATTTCAGTACCTTGTTCGACTTCACTTCTGTGATGTAGTCAGTAAAGCTCTCAATGAACTCTACTTCAATGCTTATGTTGACTCCAAACTGGCTGCTTCAAGTGCTGATCCCAGTACTACTAGCAATAATGCTTTGGGTGTTCCATACTATAGGGATCTGGTTACAGCCGTGGCTGTCAGCAAAACACTTCGTGTAAGTATTGGCCCTTCTGAGGTAAATAAGGAGTACCCTAATGCCATTTTGAATGGGTTGGAGATCATGAAAATGAACAATTCTATGGGCAGTCTTATCCCAGGAGCTGTGGCTATTACTTCTGGCTCAAGTTCTAAAAAAACTGGCATGATTGTGGGTGTGAGTGTTGGGGTAGTTGGTGCAGTTGTCTTGGCTGGAGTTTTCTTTGTACTGTGCAGGAAAAGAAGAAGGTTGGCACAAAGGCAGTCAAAGACATGGGTTCCTTTATCCATCAATGATGGAACTACTTTTCATACCATGGGAAGTAAATATTCTAACGGCACAACACTGAGTGCTGCTTCAAACTTTGAGTACCGAGTCCCTTTTGTGGCGGTTCAGGAGGCTACAAATAATTTTGATGAGAGTTGGGTTATTGGCATTGGTGGTTTTGGTAAAGTGTACAAGGGAGAGTTAAGTGATGGCACAAAAGTGGCAGTCAAGAGGGGGAATCCACGATCACAGCAGGGGCTTGCGGAGTTCCAAACTGAAATTGAAATGCTTTCTCAATTCCGTCATCGCCATCTAGTGTCTTTGATTGGTTATTGTGATGAAAGGAATGAAATGATCTTGATATATGAATATATGGAGAAGGGTACTCTCAAGGGTCATTTATATGGTTCAGGTCTGCCAAGCTTAAGCTGGAAGGAGAGGCTTGAGATATGCATTGGAGCAGCTAGAGGGCTTCATTACCTTCACACTGGCTATGCTAAAGCAGTTATTCACCGCGATGTGAAGTCTGCAAATATCCTACTTGATGAGAACCTGATGGCTAAAGTTGCTGATTTTGGATTATCAAAGACGGGGCCTGAAATTGACCAGACACATGTTAGCACAGCTGTTAAAGGTAGTTTTGGGTACCTTGATCCGGAGTATTTTAGGAGGCAACAACTAACAGAAAAGTCAGATGTATATTCATTTGGGGTAGTTCTGTTTGAAGTTCTTTGTGCAAGGCCTGTCATAGATCCAACACTTCCTAGAGAAATGGTAAACTTGGCAGAATGGGCGATGAAATGGCAGAAGAAAGGACAGTTGGAGCAAATCATAGATCAAACACTTGCAGGCAAAATAAGACCAGATTCTCTAAGGAAGTTTGGAGAAACTGCTGAGAAATGCTTGGCTGACTATGGTGTGGACAGGTCTTCTATGGGAGATGTCTTGTGGAATTTGGAGTATGCTCTCCAACTTCAAGAGGCCGTGGTTCAAGGTGATCCTGAAGAAAACAGCACCAATATGATTGGAGAACTCTCTCCACAAGTCAATAATTTCAACCAGGATGCAAGTGCTTCTGTTACACAATTTGCTGGCTCAAGCCTCGATGATCTGTCTGGTGTTTCTATGAGTAGGGTGTTCTCACAGTTGGTGAAGTCTGAGGGTAGATAG

>Glyma15g04790.1   sequence type=predicted peptide   gene model=Glyma15g04790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTDWRNIGFFICVLSIFPLVCFCATFVPVDNYLIDCGATTSTSVGTRNFIADNKDLLSTQKDIVATTSSKSATSSSDDSSLYQTARVFTASSKYTFKINQKGRHWIRLYFLPFAYEKYNLRAADFTVSTQNHVLFRSLNMQKDPVMKEYSVNVTSDSLVLTFAPSGSSIAFVNAIEVVSVPDDLIVDDGFALDPSVTSSGLVTQALETVWRVNMGGPTVTPINDTLQRTWVPDQSFLLQSNLASFSSNIKGVKYENHGQATENTAPPTVYGTLTQMNSTYDPRNIFNVTWQFDVSPGFQYLVRLHFCDVVSKALNELYFNAYVDSKLAASSADPSTTSNNALGVPYYRDLVTAVAVSKTLRVSIGPSEVNKEYPNAILNGLEIMKMNNSMGSLIPGAVAITSGSSSKKTGMIVGVSVGVVGAVVLAGVFFVLCRKRRRLAQRQSKTWVPLSINDGTTFHTMGSKYSNGTTLSAASNFEYRVPFVAVQEATNNFDESWVIGIGGFGKVYKGELSDGTKVAVKRGNPRSQQGLAEFQTEIEMLSQFRHRHLVSLIGYCDERNEMILIYEYMEKGTLKGHLYGSGLPSLSWKERLEICIGAARGLHYLHTGYAKAVIHRDVKSANILLDENLMAKVADFGLSKTGPEIDQTHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEVLCARPVIDPTLPREMVNLAEWAMKWQKKGQLEQIIDQTLAGKIRPDSLRKFGETAEKCLADYGVDRSSMGDVLWNLEYALQLQEAVVQGDPEENSTNMIGELSPQVNNFNQDASASVTQFAGSSLDDLSGVSMSRVFSQLVKSEGR*







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