Report for Sequence Feature Glyma15g04770
Feature Type: gene_model
Chromosome: Gm15
Start: 3344900
stop: 3348660
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma15g04770
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G07710 AT
Annotation by Michelle Graham. TAIR10: Ankyrin repeat family protein | chr1:2386275-2387986 REVERSE LENGTH=543
SoyBase E_val: 0 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005575 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cellular component
SoyBase N/A ISS
KOG4412
KOG
26S proteasome regulatory complex, subunit PSMD10
JGI ISS
PTHR24186 Panther
FAMILY NOT NAMED
JGI ISS
PTHR24186:SF119 Panther
JGI ISS
PF00023 PFAM
Ankyrin repeat
JGI ISS
UniRef100_G7IUA5 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Ankyrin repeat-containing protein n=1 Tax=Medicago truncatula RepID=G7IUA5_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1MDK5 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MDK5_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma15g04770
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma15g04770
Paralog Evidence Comments
Glyma13g40660 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma15g04770 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.15g042600 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma15g04770
Coding sequences of Glyma15g04770
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma15g04770.1 sequence type=CDS gene model=Glyma15g04770 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCAACACCAGCAATGCAGGCAGTAAACACCACAAGGAAAAAAATGACAAAACAATTGACAGGAAAAAGGGATGATACACCTTTGCATTCTGCAGCAAGAGCAGGGAATTTGGCTGTGCTGAAAGATACCATTTTGGAAACTGATGAGGCTGAATTGCATGAATTATTAGCCAAGCAGAATCAAGATGGAGAAACGCCTCTTTATATTGCTGCTGAATATGGTTACGTTGATGTAGTTAGGGAGATGATTCAGTATTATGATCTTGCTGATGCTGGAATTAAGGCTAGAAATGGTTTTGATGCATTGCACATTGCTGCCAAACAAGGGGATTTAGATGTACTTAAGATCCTTATGGAGGGTCATCCTGAGTTGTCGATGACTGTGGATCCATCCAACACCACAGCTTTGCACACAGCTGCAATTCAAGGGCACACTGAGATAGTGAAATTCCTATTGGAAGCTGGAAGTAGTCTGGCAACCATTGCTAGAAGTAATGGGAAAACAGCTCTGCATTCTGCTGCAAGAAATGGACATTTGGTGGTTGTGAAAGCACTTCTTGAGAAGGAGCCCGGTGTTGCAACGCGGACCGATAAGAAGGGCCAGACAGCACTTCACATGGCAGTGAAGGGACAGAACATTGAGGTGGTGGAGGAGTTGATAAAAGCAGATCCCTCATCTATAAACATGGTTGATAGTAAGGGGAACACAGCATTGCACATAGCAACCAGGAAAGGCAGGGCTCAGATTGTAAAGTTGCTTCTAGAACAGAAGGAAAATGTTACAAGTGCAGTGAACAGATGTGGTGAAACAGCAGTAGACACTGCTGAGAAAACAGGAAACCATGCCGTGCAAGCCATTCTTCTTGAACACGGTGTTGAGAGTGCAAGAACCATAAAACCCCCTCAGGGCACAACAGCTACCACAGCCCGTGAGTTGAAACAAACGGTGAGTGACATAAAGCACGAGGTCCACCACCAGTTGGAACACACACGCCAAACCAGAAAACGCGTTCAAGGCATTGCCAAACGTATAAACAAAATGCATGCAGAAGGACTCAACAATGCTATAAATTCCACAACTGTGGTGGCAGTGCTAATTGCCACCGTGGCATTTGCTGCTATTTTCACAGTCCCTGGCCAATTTGTTGATGACCCAAATAACATTCCTGCGGGAATGTCCCTTGGTGAAGCAAACATAGCCCCCCAAGCCACGTTCATCATTTTCTTTGTGTTTGATTCCATTGCACTGTTTATCTCTTTGGCTGTTGTGGTGGTGCAAACCTCGGTCGTGGTTATAGAAAGCAAAGCAAAGAAGCAGATGATGGCTGTGATTAACAAGCTGATGTGGCTGGCTTGTGTTCTTATTTCGGTGGCATTCTTGGCACTGTCTTTTGTTGTGGTGGGAAAGGAAGAGAAGTGGCTGGCCATAGGAGTGACCATTATAGGGACAACCATAATGGCTACAACGTTGGGTACTATGTGTTACTGGGTCATTAGGCATCGCATTGAGACCTCCAATTTGAGGAGCATTCGGAAATCTTCGTTGCAAAGCAAGTCAAAGTCTTTTTCAGTGTCGGCTTTTTCAGATTCTGAGCTACTAAACAGTGAGTATTATAAGAAAATGTATGCGATTTAG
Predicted protein sequences of Glyma15g04770
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma15g04770.1 sequence type=predicted peptide gene model=Glyma15g04770 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MATPAMQAVNTTRKKMTKQLTGKRDDTPLHSAARAGNLAVLKDTILETDEAELHELLAKQNQDGETPLYIAAEYGYVDVVREMIQYYDLADAGIKARNGFDALHIAAKQGDLDVLKILMEGHPELSMTVDPSNTTALHTAAIQGHTEIVKFLLEAGSSLATIARSNGKTALHSAARNGHLVVVKALLEKEPGVATRTDKKGQTALHMAVKGQNIEVVEELIKADPSSINMVDSKGNTALHIATRKGRAQIVKLLLEQKENVTSAVNRCGETAVDTAEKTGNHAVQAILLEHGVESARTIKPPQGTTATTARELKQTVSDIKHEVHHQLEHTRQTRKRVQGIAKRINKMHAEGLNNAINSTTVVAVLIATVAFAAIFTVPGQFVDDPNNIPAGMSLGEANIAPQATFIIFFVFDSIALFISLAVVVVQTSVVVIESKAKKQMMAVINKLMWLACVLISVAFLALSFVVVGKEEKWLAIGVTIIGTTIMATTLGTMCYWVIRHRIETSNLRSIRKSSLQSKSKSFSVSAFSDSELLNSEYYKKMYAI*