Glyma15g04686 - SoyBase

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Report for Sequence Feature Glyma15g04686

Feature Type:	gene_model
Chromosome:	Gm15
Start:	3252848
stop:	3259595
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g04686

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G59740	AT	Annotation by Michelle Graham. TAIR10: UDP-N-acetylglucosamine (UAA) transporter family \| chr5:24070310-24072747 REVERSE LENGTH=344	SoyBase	E_val: 0	ISS
GO:0007062	GO-bp	Annotation by Michelle Graham. GO Biological Process: sister chromatid cohesion	SoyBase	N/A	ISS
GO:0031048	GO-bp	Annotation by Michelle Graham. GO Biological Process: chromatin silencing by small RNA	SoyBase	N/A	ISS
GO:0045132	GO-bp	Annotation by Michelle Graham. GO Biological Process: meiotic chromosome segregation	SoyBase	N/A	ISS
GO:0055085	GO-bp	Annotation by Michelle Graham. GO Biological Process: transmembrane transport	SoyBase	N/A	ISS
GO:0005354	GO-mf	Annotation by Michelle Graham. GO Molecular Function: galactose transmembrane transporter activity	SoyBase	N/A	ISS
KOG1581	KOG	UDP-galactose transporter related protein	JGI		ISS
PTHR10778	Panther	UDP-GALACTOSE TRANSPORTER-RELATED	JGI		ISS
PTHR10778:SF13	Panther	UDP-GALACTOSE TRANSPORTER B1 (SLC35B1)	JGI		ISS
PF08449	PFAM	UAA transporter family	JGI		ISS
UniRef100_G7IHK8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Adenosine 3'-phospho 5'-phosphosulfate transporter n=1 Tax=Medicago truncatula RepID=G7IHK8_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1MDJ6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MDJ6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g04686

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g04686 not represented in the dataset	Glyma15g04686 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g04686

Paralog	Evidence	Comments
Glyma13g40761	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g04686 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g041700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g04686

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma15g04686

Limit To All Plant Sequences

>Glyma15g04686.2   sequence type=transcript   gene model=Glyma15g04686   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TAAAAAAGAGTCAATAGTAAAGATGTAGTTAGTGAATCAAAGAAGCCGAATCAACTGAAAGCAAAATTGATCGAAATCGAATTCTTGGTTTGGGGGGAGGGGTTGACACGTCCAAAATGGAAAGGGCTTTTTTCATGGCAATTTGGCAAACAAAAGAACAAAACAAATCCGTGTACTATACCGTATTGTTGATGATGGTGAATGCAAGCTGACGTGGCAAACCAGTTCTCTTGCTTTTATTAATCTCACAGAAAATGATGCCGGAGAAAGCGATGCTTATGAATCTCTCTCTCTCTCTCTCTAACAGAACCCAAAACAAAACAAAACTAATGCTATGTCTCAGTTAGTTCTTCTGAGTCTCCGAGGTTAAGAGTTGAGCTAAGACGCGACACACACACCTCTCTAACTCTAACATTCAAAATTCGATGTCGGGGTTTTGATCCCCTAGCTGAGGTCCCACAGCCTCTTGTATTGTATTGTGTTGTATGTATTTGGGGTATGGCGGAATCATCCACTAGTTCTGCTGTTTCAGTTGATTCCATTTCCAGAGACAACAAGTTCTGGAAAGGGGCATTTGCTGTCGCTGGAATCATGCTTACCCTCGTCACCTATGGTGTCTTGCAGGAAAAGATCATGAGAGTGCCGTATGGAGCAGAAAAGGAGTATTTCAAGCATTCACTGTTTCTTGTTTTCTGCAACCGCATCACAACATCTGCTGTTTCTGCTTGTTCTTTGCTGGCAAGTAAAAAAGCAATGGACCCAGTAGCTCCCATTTATAAGTATTGCCTTATCTCGGTATCAAACATACTAACTACAACTTGCCAGTATGAGGTCTGGGGTGCCCTCATTATGCAGAAGAGATACCAGGGACCTGACTATTTGTTGGCTTTTTTAATTACCCTTGGTTGCTCAGTATTTATCCTATATCCGGCAGGAGCAGACATGAGTCCTTACAGTAGAGGAAGGGAAAATACAGTTTGGGGAGTTCTCCTAATGGTTGGCTATCTTGGGTTTGATGGCTTTACAAGCACATTCCAAGATAAGTTGTTTAGAGGCTATGACATGGAGATACATAATCAGATATTTTACACAACATTGTGCTCTTGTATTCTTAGCCTGACAGGTCTTATCTTACAAGGACATTTAATACCAGCTGTAGAATTTGTTTATAACCATCATGATTGTTTCTTTGACATAGCATTGCTTTCTACTGTTGCCACAGTTAGTCAATTTTTTATTTCATACACAATTCGCACCTTCGGTGCTTTGACATTTGCAACCATAATGACGACAAGACAGTTGGTGAGCATTATGCTGTCATGTGTGTGGTTTGCCCATCCTCTTAGCTGGGAACAGTGGATTGGAGCTGTCATTGTCTTTGGCTCCCTTTATGGAAAAAGCTTCTCGAGGAAAATGCCTCAAAAGACAACCTCCTCCATAACACTTGTTCAAAAGGGGGATCCAAATAATTTGAAGGACAATCCGTGACAGAGATGGAGGTAAATTTTCCTGAACTGACACCTGCTAATGTCTGCAGTGGTGATGTGGCTTCAGCTTTAACTTCAGAGTTGGGCATTCAATATTTAAGATCATGGATAGTTTCATTATACAGAGTTGGTTTGACTTAAAATCCAGTCAGCATCAGCTGCTGCTAGATGTGCAGATTTTGGAATCACAGTCATAACAATAGAGAACTTAAAAGGATTTTAACCCCGTATTTTTTGGTAGGGGAGATCAATTATAGACTGACTAGGGCCAAAAGATGCTTATAGATTGATATATGTACAATGCATTTGCTCAAGCAAAAGTTGTTACTTTGTTCTGTTTTTCAGAAATGTGTAGTGGAGAGAAATTTGTTTGTGGTAATTTCCAGGATCCGTTATTTACTTAGTGTAATTGGCAATTTTATGGTGTTATTATCTATAAGCATACTGTGCAAAATTATAACAGGCATAGATTGTACTAACATTAGGGAACCTTGATTCCCAAGTTCATTCTGCATGCACTAAGTTGTTT

>Glyma15g04686.3   sequence type=transcript   gene model=Glyma15g04686   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TAAAAAAGAGTCAATAGTAAAGATGTAGTTAGTGAATCAAAGAAGCCGAATCAACTGAAAGCAAAATTGATCGAAATCGAATTCTTGGTTTGGGGGGAGGGGTTGACACGTCCAAAATGGAAAGGGCTTTTTTCATGGCAATTTGGCAAACAAAAGAACAAAACAAATCCGTGTACTATACCGTATTGTTGATGATGGTGAATGCAAGCTGACGTGGCAAACCAGTTCTCTTGCTTTTATTAATCTCACAGAAAATGATGCCGGAGAAAGCGATGCTTATGAATCTCTCTCTCTCTCTCTCTAACAGAACCCAAAACAAAACAAAACTAATGCTATGTCTCAGTTAGTTCTTCTGAGTCTCCGAGGTTAAGAGTTGAGCTAAGACGCGACACACACACCTCTCTAACTCTAACATTCAAAATTCGATGTCGGGGTTTTGATCCCCTAGCTGAGGTCCCACAGCCTCTTGTATTGTATTGTGTTGTATGTATTTGGGGTATGGCGGAATCATCCACTAGTTCTGCTGTTTCAGTTGATTCCATTTCCAGAGACAACAAGTTCTGGAAAGGGGCATTTGCTGTCGCTGGAATCATGCTTACCCTCGTCACCTATGGTGTCTTGCAGGAAAAGATCATGAGAGTGCCGTATGGAGCAGAAAAGGAGTATTTCAAGCATTCACTGTTTCTTGTTTTCTGCAACCGCATCACAACATCTGCTGTTTCTGCTTGTTCTTTGCTGGCAAGTAAAAAAGCAATGGACCCAGTAGCTCCCATTTATAAGTATTGCCTTATCTCGGTATCAAACATACTAACTACAACTTGCCAGTATGAGGCCCTCAAATATGTTAGTTTTCCTGTTCAAACCCTTGCCAAATGTGCAAAAACGATACCAGTTATGGTCTGGGGTGCCCTCATTATGCAGAAGAGATACCAGGGACCTGACTATTTGTTGGCTTTTTTAATTACCCTTGGTTGCTCAGTATTTATCCTATATCCGGCAGGAGCAGACATGAGTCCTTACAGTAGAGGAAGGGAAAATACAGTTTGGGGAGTTCTCCTAATGGTTGGCTATCTTGGGTTTGATGGCTTTACAAGCACATTCCAAGATAAGTTGTTTAGAGGCTATGACATGGAGATACATAATCAGATATTTTACACAACATTGTGCTCTTGTATTCTTAGCCTGACAGGTTGCCACAGTTAGTCAATTTTTTATTTCATACACAATTCGCACCTTCGGTGCTTTGACATTTGCAACCATAATGACGACAAGACAGTTGGTGAGCATTATGCTGTCATGTGTGTGGTTTGCCCATCCTCTTAGCTGGGAACAGTGGATTGGAGCTGTCATTGTCTTTGGCTCCCTTTATGGAAAAAGCTTCTCGAGGAAAATGCCTCAAAAGACAACCTCCTCCATAACACTTGTTCAAAAGGGGGATCCAAATAATTTGAAGGACAATCCGTGACAGAGATGGAGGTAAATTTTCCTGAACTGACACCTGCTAATGTCTGCAGTGGTGATGTGGCTTCAGCTTTAACTTCAGAGTTGGGCATTCAATATTTAAGATCATGGATAGTTTCATTATACAGAGTTGGTTTGACTTAAAATCCAGTCAGCATCAGCTGCTGCTAGATGTGCAGATTTTGGAATCACAGTCATAACAATAGAGAACTTAAAAGGATTTTAACCCCGTATTTTTTGGTAGGGGAGATCAATTATAGACTGACTAGGGCCAAAAGATGCTTATAGATTGATATATGTACAATGCATTTGCTCAAGCAAAAGTTGTTACTTTGTTCTGTTTTTCAGAAATGTGTAGTGGAGAGAAATTTGTTTGTGGTAATTTCCAGGATCCGTTATTTACTTAGTGTAATTGGCAATTTTATGGTGTTATTATCTATAAGCATACTGTGCAAAATTATAACAGGCATAGATTGTACTAACATTAGGGAACCTTGATTCCCAAGTTCATTCTGCATGCACTAAGTTGTTT

Coding sequences of Glyma15g04686

Limit To All Plant Sequences

>Glyma15g04686.1   sequence type=CDS   gene model=Glyma15g04686   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGAATCATCCACTAGTTCTGCTGTTTCAGTTGATTCCATTTCCAGAGACAACAAGTTCTGGAAAGGGGCATTTGCTGTCGCTGGAATCATGCTTACCCTCGTCACCTATGGTGTCTTGCAGGAAAAGATCATGAGAGTGCCGTATGGAGCAGAAAAGGAGTATTTCAAGCATTCACTGTTTCTTGTTTTCTGCAACCGCATCACAACATCTGCTGTTTCTGCTTGTTCTTTGCTGGCAAGTAAAAAAGCAATGGACCCAGTAGCTCCCATTTATAAGTATTGCCTTATCTCGGTATCAAACATACTAACTACAACTTGCCAGTATGAGGCCCTCAAATATGTTAGTTTTCCTGTTCAAACCCTTGCCAAATGTGCAAAAACGATACCAGTTATGGTCTGGGGTGCCCTCATTATGCAGAAGAGATACCAGGGACCTGACTATTTGTTGGCTTTTTTAATTACCCTTGGTTGCTCAGTATTTATCCTATATCCGGCAGGAGCAGACATGAGTCCTTACAGTAGAGGAAGGGAAAATACAGTTTGGGGAGTTCTCCTAATGGTTGGCTATCTTGGGTTTGATGGCTTTACAAGCACATTCCAAGATAAGTTGTTTAGAGGCTATGACATGGAGATACATAATCAGATATTTTACACAACATTGTGCTCTTGTATTCTTAGCCTGACAGGTCTTATCTTACAAGGACATTTAATACCAGCTGTAGAATTTGTTTATAACCATCATGATTGTTTCTTTGACATAGCATTGCTTTCTACTGTTGCCACAGTTAGTCAATTTTTTATTTCATACACAATTCGCACCTTCGGTGCTTTGACATTTGCAACCATAATGACGACAAGACAGTTGGTGAGCATTATGCTGTCATGTGTGTGGTTTGCCCATCCTCTTAGCTGGGAACAGTGGATTGGAGCTGTCATTGTCTTTGGCTCCCTTTATGGAAAAAGCTTCTCGAGGAAAATGCCTCAAAAGACAACCTCCTCCATAACACTTGTTCAAAAGGGGGATCCAAATAATTTGAAGGACAATCCGTGA

>Glyma15g04686.2   sequence type=CDS   gene model=Glyma15g04686   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGAATCATCCACTAGTTCTGCTGTTTCAGTTGATTCCATTTCCAGAGACAACAAGTTCTGGAAAGGGGCATTTGCTGTCGCTGGAATCATGCTTACCCTCGTCACCTATGGTGTCTTGCAGGAAAAGATCATGAGAGTGCCGTATGGAGCAGAAAAGGAGTATTTCAAGCATTCACTGTTTCTTGTTTTCTGCAACCGCATCACAACATCTGCTGTTTCTGCTTGTTCTTTGCTGGCAAGTAAAAAAGCAATGGACCCAGTAGCTCCCATTTATAAGTATTGCCTTATCTCGGTATCAAACATACTAACTACAACTTGCCAGTATGAGGTCTGGGGTGCCCTCATTATGCAGAAGAGATACCAGGGACCTGACTATTTGTTGGCTTTTTTAATTACCCTTGGTTGCTCAGTATTTATCCTATATCCGGCAGGAGCAGACATGAGTCCTTACAGTAGAGGAAGGGAAAATACAGTTTGGGGAGTTCTCCTAATGGTTGGCTATCTTGGGTTTGATGGCTTTACAAGCACATTCCAAGATAAGTTGTTTAGAGGCTATGACATGGAGATACATAATCAGATATTTTACACAACATTGTGCTCTTGTATTCTTAGCCTGACAGGTCTTATCTTACAAGGACATTTAATACCAGCTGTAGAATTTGTTTATAACCATCATGATTGTTTCTTTGACATAGCATTGCTTTCTACTGTTGCCACAGTTAGTCAATTTTTTATTTCATACACAATTCGCACCTTCGGTGCTTTGACATTTGCAACCATAATGACGACAAGACAGTTGGTGAGCATTATGCTGTCATGTGTGTGGTTTGCCCATCCTCTTAGCTGGGAACAGTGGATTGGAGCTGTCATTGTCTTTGGCTCCCTTTATGGAAAAAGCTTCTCGAGGAAAATGCCTCAAAAGACAACCTCCTCCATAACACTTGTTCAAAAGGGGGATCCAAATAATTTGAAGGACAATCCGTGA

>Glyma15g04686.3   sequence type=CDS   gene model=Glyma15g04686   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGAATCATCCACTAGTTCTGCTGTTTCAGTTGATTCCATTTCCAGAGACAACAAGTTCTGGAAAGGGGCATTTGCTGTCGCTGGAATCATGCTTACCCTCGTCACCTATGGTGTCTTGCAGGAAAAGATCATGAGAGTGCCGTATGGAGCAGAAAAGGAGTATTTCAAGCATTCACTGTTTCTTGTTTTCTGCAACCGCATCACAACATCTGCTGTTTCTGCTTGTTCTTTGCTGGCAAGTAAAAAAGCAATGGACCCAGTAGCTCCCATTTATAAGTATTGCCTTATCTCGGTATCAAACATACTAACTACAACTTGCCAGTATGAGGCCCTCAAATATGTTAGTTTTCCTGTTCAAACCCTTGCCAAATGTGCAAAAACGATACCAGTTATGGTCTGGGGTGCCCTCATTATGCAGAAGAGATACCAGGGACCTGACTATTTGTTGGCTTTTTTAATTACCCTTGGTTGCTCAGTATTTATCCTATATCCGGCAGGAGCAGACATGAGTCCTTACAGTAGAGGAAGGGAAAATACAGTTTGGGGAGTTCTCCTAATGGTTGGCTATCTTGGGTTTGATGGCTTTACAAGCACATTCCAAGATAAGTTGTTTAGAGGCTATGACATGGAGATACATAATCAGATATTTTACACAACATTGTGCTCTTGTATTCTTAGCCTGACAGGTTGCCACAGTTAG

Predicted protein sequences of Glyma15g04686

Limit To All Plant Sequences

>Glyma15g04686.1   sequence type=predicted peptide   gene model=Glyma15g04686   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAESSTSSAVSVDSISRDNKFWKGAFAVAGIMLTLVTYGVLQEKIMRVPYGAEKEYFKHSLFLVFCNRITTSAVSACSLLASKKAMDPVAPIYKYCLISVSNILTTTCQYEALKYVSFPVQTLAKCAKTIPVMVWGALIMQKRYQGPDYLLAFLITLGCSVFILYPAGADMSPYSRGRENTVWGVLLMVGYLGFDGFTSTFQDKLFRGYDMEIHNQIFYTTLCSCILSLTGLILQGHLIPAVEFVYNHHDCFFDIALLSTVATVSQFFISYTIRTFGALTFATIMTTRQLVSIMLSCVWFAHPLSWEQWIGAVIVFGSLYGKSFSRKMPQKTTSSITLVQKGDPNNLKDNP*

>Glyma15g04686.2   sequence type=predicted peptide   gene model=Glyma15g04686   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAESSTSSAVSVDSISRDNKFWKGAFAVAGIMLTLVTYGVLQEKIMRVPYGAEKEYFKHSLFLVFCNRITTSAVSACSLLASKKAMDPVAPIYKYCLISVSNILTTTCQYEVWGALIMQKRYQGPDYLLAFLITLGCSVFILYPAGADMSPYSRGRENTVWGVLLMVGYLGFDGFTSTFQDKLFRGYDMEIHNQIFYTTLCSCILSLTGLILQGHLIPAVEFVYNHHDCFFDIALLSTVATVSQFFISYTIRTFGALTFATIMTTRQLVSIMLSCVWFAHPLSWEQWIGAVIVFGSLYGKSFSRKMPQKTTSSITLVQKGDPNNLKDNP*

>Glyma15g04686.3   sequence type=predicted peptide   gene model=Glyma15g04686   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAESSTSSAVSVDSISRDNKFWKGAFAVAGIMLTLVTYGVLQEKIMRVPYGAEKEYFKHSLFLVFCNRITTSAVSACSLLASKKAMDPVAPIYKYCLISVSNILTTTCQYEALKYVSFPVQTLAKCAKTIPVMVWGALIMQKRYQGPDYLLAFLITLGCSVFILYPAGADMSPYSRGRENTVWGVLLMVGYLGFDGFTSTFQDKLFRGYDMEIHNQIFYTTLCSCILSLTGCHS*

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