Report for Sequence Feature Glyma15g04641
Feature Type: gene_model
Chromosome: Gm15
Start: 3229566
stop: 3229843
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma15g04641
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G59613 AT
Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrial respiratory chain complex III; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G46430.1). | chr5:24015726-24016500 REVERSE LENGTH=55
SoyBase E_val: 4.00E-28 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005750 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial respiratory chain complex III
SoyBase N/A ISS
GO:0005753 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial proton-transporting ATP synthase complex
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
UniRef100_G7IHL3 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Mitochondrial ATP synthase subunit n=1 Tax=Medicago truncatula RepID=G7IHL3_MEDTR
SoyBase E_val: 2.00E-26 ISS
UniRef100_UPI000233B49E UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233B49E related cluster n=1 Tax=unknown RepID=UPI000233B49E
SoyBase E_val: 1.00E-31 ISS
Expression Patterns of Glyma15g04641
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma15g04641
Paralog Evidence Comments
Glyma13g40810 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma15g04641 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.15g041300 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma15g04641
Coding sequences of Glyma15g04641
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma15g04641.1 sequence type=CDS gene model=Glyma15g04641 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAGACTGTTCGATCCATGGCCTGTTTTCTTCAAGAGAGAATGGAAGCGGAATTGGCCCTTCTTGGTTGGATTCGCCATCACCGGAACTCTCATCACCAAACTTTCCCTTGGTCTCTCTGAGGAGGAAGCCAAAAAGTCGAAATTCGTCCAGGCACACAAGAGGTGA
Predicted protein sequences of Glyma15g04641
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma15g04641.1 sequence type=predicted peptide gene model=Glyma15g04641 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MRLFDPWPVFFKREWKRNWPFLVGFAITGTLITKLSLGLSEEEAKKSKFVQAHKR*