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Report for Sequence Feature Glyma15g04641

Feature Type:gene_model
Chromosome:Gm15
Start:3229566
stop:3229843
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G59613AT Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrial respiratory chain complex III; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G46430.1). | chr5:24015726-24016500 REVERSE LENGTH=55 SoyBaseE_val: 4.00E-28ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005750GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial respiratory chain complex III SoyBaseN/AISS
GO:0005753GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial proton-transporting ATP synthase complex SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_G7IHL3UniRef Annotation by Michelle Graham. Most informative UniRef hit: Mitochondrial ATP synthase subunit n=1 Tax=Medicago truncatula RepID=G7IHL3_MEDTR SoyBaseE_val: 2.00E-26ISS
UniRef100_UPI000233B49EUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233B49E related cluster n=1 Tax=unknown RepID=UPI000233B49E SoyBaseE_val: 1.00E-31ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g04641 not represented in the dataset

Glyma15g04641 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma13g40810 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.15g041300 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma15g04641.1   sequence type=CDS   gene model=Glyma15g04641   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGACTGTTCGATCCATGGCCTGTTTTCTTCAAGAGAGAATGGAAGCGGAATTGGCCCTTCTTGGTTGGATTCGCCATCACCGGAACTCTCATCACCAAACTTTCCCTTGGTCTCTCTGAGGAGGAAGCCAAAAAGTCGAAATTCGTCCAGGCACACAAGAGGTGA

>Glyma15g04641.1   sequence type=predicted peptide   gene model=Glyma15g04641   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRLFDPWPVFFKREWKRNWPFLVGFAITGTLITKLSLGLSEEEAKKSKFVQAHKR*







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