SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma15g04583

Feature Type:gene_model
Chromosome:Gm15
Start:3193144
stop:3194850
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma15g04583
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G19460AT Annotation by Michelle Graham. TAIR10: Reticulon family protein | chr3:6747600-6748904 FORWARD LENGTH=200 SoyBaseE_val: 1.00E-23ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005783GO-cc Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PTHR10994Panther RETICULON/NOGO JGI ISS
PTHR10994:SF27Panther RETICULON-RELATED (PLANT) JGI ISS
PF02453PFAM Reticulon JGI ISS
UniRef100_I1MDI1UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MDI1_SOYBN SoyBaseE_val: 1.00E-64ISS
UniRef100_Q9LT71UniRef Annotation by Michelle Graham. Most informative UniRef hit: Reticulon-like protein B11 n=1 Tax=Arabidopsis thaliana RepID=RTNLK_ARATH SoyBaseE_val: 6.00E-21ISS

Expression Patterns of Glyma15g04583
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g04583 not represented in the dataset
Glyma15g04583 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma15g04583 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.15g040800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma15g04583
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma15g04583
>Glyma15g04583.2   sequence type=transcript   gene model=Glyma15g04583   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GATGATGGCGGTGCTCAAAACCGACACAATCTCCCGGAATTTCAGATTCTCACTTCCTCACATTTTCGGCTTCCCGATGGCTGGGTTCTCGAGTAAAGGCCCCGTGCCTCTAACCCTTCTCACGTTGACAGCTATTTCTGGTTCTGCCCGGTGGCGTGGATAGTGCTGCTAGTCCTCGCTTTGTGATGACGAGTCGAGGGGGCGTGTTGTGAGTCCCACATCGGGTGATTAATGAGCACGTTTCTCATCCTTTCACCGTGTTCTCGGCGAAGGCTTAGTTGCTGATGTGGTGTTGTGGAAGGATTGACGTGGAGCGGTTGTGGTGATCGTTTCTGTCATCGCATTGTGGTACCTCTTCGAGCGTGCCTGTTACAAATTCTTGTCATTCGTCGCCAATGTCGTGTTGCTTCTCGTCGTTATTTTTTTTCTGGGCCAAAGCTGCTAACCTTCTCAATAGACCTCTTCCTCCTCTCCCCGATTTGGAGATCTCGAAGGAAACTATTGCCAGGGTTGCTGATGCACTGCAAATTTGGTTGAATCTAGCCTTGTTTGTTGCACATGACATAGCGATTGAGAAGAATTTTCTGCTCTGCCTCCAAGTTGTTGGTGTATTGTGGGTAATATCTTACATCGGTAGTTTGTTCAACTTTTTGAACTTTGATCTATATCGGTGTTCTTCTTCGCTTGTCTTTCCCTGGGTTGTATGACAAGAACCAGAACAATTTCAATTTGCATGGCTAGAGTAAGTTTCTCCATGTCTAGCATTATCCAATTTTTGCCAACAAGGTGTTTGATTAAACGCTTCTGAAAATTTTGGCTTATTATTTTAGCCTTTTAGGCTTGTTTTGACGATTTCAGCTTCTGCCATGTGTGGTGGTTAAGCATTGTTCATTTGTTAGCTTCTGTCATGAGTGGTTAAACCTTGATTATTGTTGGTTCACACAGTGTTTGTGAAAAGTTCTCATAAAAGACAAATTTTGTGATTCTTCTATTTTGTTGATGTAAGCTTCTGTTTATGGTGATTAAGCATTGTTTAAGCTTTTGCCATGGATGGTCAAACATTGGATTGTTG
Coding sequences of Glyma15g04583
>Glyma15g04583.1   sequence type=CDS   gene model=Glyma15g04583   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGTGTTGCTTCTCGTCGTTATTTTTTTTCTGGGCCAAAGCTGCTAACCTTCTCAATAGACCTCTTCCTCCTCTCCCCGATTTGGAGATCTCGAAGGAAACTATTGCCAGGGTTGCTGATGCACTGCAAATTTGGTTGAATCTAGCCTTGTTTGTTGCACATGACATAGCGATTGAGAAGAATTTTCTGCTCTGCCTCCAAGTTGTTGGTGTATTGTGGGTAATATCTTACATCGGTAGTTTGTTCAACTTTTTGAACTTTGATCTATATCGGTGTTCTTCTTCGCTTGTCTTTCCCTGGGTTGTATGA

>Glyma15g04583.2   sequence type=CDS   gene model=Glyma15g04583   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGTGTTGCTTCTCGTCGTTATTTTTTTTCTGGGCCAAAGCTGCTAACCTTCTCAATAGACCTCTTCCTCCTCTCCCCGATTTGGAGATCTCGAAGGAAACTATTGCCAGGGTTGCTGATGCACTGCAAATTTGGTTGAATCTAGCCTTGTTTGTTGCACATGACATAGCGATTGAGAAGAATTTTCTGCTCTGCCTCCAAGTTGTTGGTGTATTGTGGGTAATATCTTACATCGGTAGTTTGTTCAACTTTTTGAACTTTGATCTATATCGGTGTTCTTCTTCGCTTGTCTTTCCCTGGGTTGTATGA
Predicted protein sequences of Glyma15g04583
>Glyma15g04583.1   sequence type=predicted peptide   gene model=Glyma15g04583   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSCCFSSLFFFWAKAANLLNRPLPPLPDLEISKETIARVADALQIWLNLALFVAHDIAIEKNFLLCLQVVGVLWVISYIGSLFNFLNFDLYRCSSSLVFPWVV*

>Glyma15g04583.2   sequence type=predicted peptide   gene model=Glyma15g04583   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSCCFSSLFFFWAKAANLLNRPLPPLPDLEISKETIARVADALQIWLNLALFVAHDIAIEKNFLLCLQVVGVLWVISYIGSLFNFLNFDLYRCSSSLVFPWVV*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo