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Report for Sequence Feature Glyma15g04450
Feature Type: gene_model
Chromosome: Gm15
Start: 3116829
stop: 3123240
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma15g04450
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT2G18220 AT
Annotation by Michelle Graham. TAIR10: Noc2p family | chr2:7928254-7931851 FORWARD LENGTH=764
SoyBase E_val: 0 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0009220 GO-bp
Annotation by Michelle Graham. GO Biological Process: pyrimidine ribonucleotide biosynthetic process
SoyBase N/A ISS
GO:0042991 GO-bp
Annotation by Michelle Graham. GO Biological Process: transcription factor import into nucleus
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0005829 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytosol
SoyBase N/A ISS
KOG2256
KOG
Predicted protein involved in nuclear export of pre-ribosomes
JGI ISS
PTHR12687 Panther
NUCLEOLAR COMPLEX 2 AND RAD4-RELATED
JGI ISS
PTHR12687:SF5 Panther
SIMILAR TO NUCLEOLAR COMPLEX 2
JGI ISS
PF03715 PFAM
Noc2p family
JGI ISS
UniRef100_G7ID95 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Nucleolar complex protein-like protein n=1 Tax=Medicago truncatula RepID=G7ID95_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1MDG4 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MDG4_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma15g04450
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma15g04450
Paralog Evidence Comments
Glyma13g41010 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma15g04450 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.15g039500 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma15g04450
Transcripts of Glyma15g04450
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma15g04450.3 sequence type=transcript gene model=Glyma15g04450 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
GTTAAAATGAAGGGCATAAAATAAAATCACCTCCTTTTACTTGTCTTCTCTATACTCTGTCCCGCCGCCGCGAAGCTGCAACTACACATAGCATCACGAATAGGTTTTTTATTCAACCAACATGGACGTATCGGAGAGGACTTTGGATGGAGAGAATAGTGTAAGACGAAGGAGCAGAAAAAAATCCATGTCTGGAACTGCGAGTGGAGCACGAGAGCATATGGAGCAATTGCAGAAACTTCAGGAGAAGGACCCAGAATTTTATGAGTTCTTGAAAGAGCATGACAATGAGTTGCTTCAATTCAGTGATGATGATGTAGATGAAGATGTGGGTACTAACACAGAAGATGGAAATCTACAGCTAGATGAGGAGGTTAGTGAGGATGAGATTGAAGAGAAGGAACAAAAATCCTCTAAGGAAGTTATAACTACTTCTATGGTTGATTTGTGGGGCAAATCAATTCAAGAAAGTGGGAGCTTGAGTGCGGTTCGTTCACTGATGAGGGCTTTCAGGACAGCATGTCACTATGGTGATGATGGGGGGAATGAATCTATGGCAAAGCTTAGTGTAATAATGTCTAGCACTGTATTCAACAAAATAATGTTGACTGTACTTACTGAAATGGATGGAATACTAAGAAATTTGTTGAAGCTTCCTGCTTCTGGTGGAAAGAAAGAGACCATAACAGATTTGATGGCCACGAAGCATTGGAAGAGTTATGGCCATTTAGTAAAGTCTTACCTTGGAAACGCTCTCCATGTTTTGAACCAAATGACTGACACAGAAATGATATCGTATACTTTACGTCGGCTGAAATATTCTTTGTTGTTTTTGGCTGCTTTTCCTTCACTCCTTAGAAAATACATTAAGGTGGTCCTTCATTTCTGGGGTACTGGTGGAGGTGCCCTTCCGGTTGTTTCGTTTCTATTTATGAGAGACTTATGTATCCGTATTGGGTCTGGCTGCATAGATGAATGCTTCAAAGGAATATATAAAGCCTATGTTTTGAATTGCCACTTTGTAAATGCTGTGAAACTTAAACATATCCATTTTCTTGGCAATTGTGTCATTGAACTTCTTGGCGTGGATCTTCCAACTGCATATCAACATGCCTTCACTTACATCCGGCAACTGGCTACAATTTTAAGGGAGGCACTTAATACAAAGACTAAGGAATCTTTTCGCAAGGTTTATGAGTGGAAATTCATAAACTGCCTTGAACTTTGGACCGGTGCTATCTGTGCCTACAGTTCAGAGTCAGACTTTAAGCAACTTGCATATCCATTGACCCAAATAATTTCTGGGGCAGCTCGTCTGGTTCCCACAGCCAGATATTTTCCCCTTAGGTTGAGATGTGTAAGAATGCTGAACCAGATTGCAGCTTCTACACATTCTTTTATACCAGTGTCTATGCTCCTTTTGGACATGCTGGAGATGAAAGAATTGAATAGACCCCCAACGGGAGGTGTTGGCAAAGCTGTTGATTTACGCAGTATACTGAAGGTTAGCAAATTGACCCTAAAGACACGAGCATTTCAAGAGGCATGTGTTATTTCTGTGGTTGAAGAGCTTGCTGAACACTTGGCACAGTGGAGTTATTCTGTTGCATTCTTGGAGTTGTCTTTTATTCCACTTGTGAGGTTGCGTAGCTTTTGCAAATCGACCAGAGTTGAGAGGTTTCGAAAAGAAATGAGGCAGCTTATATGCCAGATTGAGGCTAGTTCTGACTACCTGAATGGAAAGCGCCTGTCAATTTCCTTTTTACCTAATGACCCTGCAGCAGCATCTTTCCTCGAGGATGAAAAAAAGCCAGCTTCTAGTGCACTGTCAAAGTACGTCGTGACACTACACCAGAGAGCAGAGCAAAAAAATAATTCATTAATGGAATCCAGTGTTCTTGTGGGAGACGAATCCTCTAAATTTGGGAATGAAATATCAGAAAGTGATGAAGAGGATGCGAGAAAGAATGAGGACGGTGATGCGGTCTTTAGTTCATCGTGGTTACCTGGAAATGACTCTAAGATAAAACAACCTACAGAAACAAAAAGAAAGAGGAAAAAGCAGCAGAAAGAGAAAGCCATTGACGACGATGTTGTGGAGGACTTAGTACTTAGTTCTGACGAAGATTTGCCTTCAAGCCACAGCCCTTCTGCTAGGAAAAATGACGGCATAGATCATTCACCTCCAAAACAAAAACGCAAGCAGAAACACAGGAAATAATGACATGTCTAGACAGCGACCTCTATTCAAGATTGATACTTCTGCGTGGAAAATGTGAGAGAAAAGTTTTGATAGTTTTATCAATAGTTTCAATTTAATTAATTTTGTTTGGATGCAAAAAGAAAAATAGATTTTATATAGAAAATTACGAAAAAGTAGGTGAAAGGAAAAAAAAAAAAAAGGCCATCGTGAAATCTGGGATAATTTGAAAAAAAAAAGTTGAAAAATAAAACTTCAATATC
Coding sequences of Glyma15g04450
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma15g04450.2 sequence type=CDS gene model=Glyma15g04450 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTGTAAACAGGTTTTTTATTCAACCAACATGGACGTATCGGAGAGGACTTTGGATGGAGAGAATAGTGTAAGACGAAGGAGCAGAAAAAAATCCATGTCTGGAACTGCGAGTGGAGCACGAGAGCATATGGAGCAATTGCAGAAACTTCAGGAGAAGGACCCAGAATTTTATGAGTTCTTGAAAGAGCATGACAATGAGTTGCTTCAATTCAGTGATGATGATGTAGATGAAGATGTGGGTACTAACACAGAAGATGGAAATCTACAGCTAGATGAGGAGGTTAGTGAGGATGAGATTGAAGAGAAGGAACAAAAATCCTCTAAGGAAGTTATAACTACTTCTATGGTTGATTTGTGGGGCAAATCAATTCAAGAAAGTGGGAGCTTGAGTGCGGTTCGTTCACTGATGAGGGCTTTCAGGACAGCATGTCACTATGGTGATGATGGGGGGAATGAATCTATGGCAAAGCTTAGTGTAATAATGTCTAGCACTGTATTCAACAAAATAATGTTGACTGTACTTACTGAAATGGATGGAATACTAAGAAATTTGTTGAAGCTTCCTGCTTCTGGTGGAAAGAAAGAGACCATAACAGATTTGATGGCCACGAAGCATTGGAAGAGTTATGGCCATTTAGTAAAGTCTTACCTTGGAAACGCTCTCCATGTTTTGAACCAAATGACTGACACAGAAATGATATCGTATACTTTACGTCGGCTGAAATATTCTTTGTTGTTTTTGGCTGCTTTTCCTTCACTCCTTAGAAAATACATTAAGGTGGTCCTTCATTTCTGGGGTACTGGTGGAGGTGCCCTTCCGGTTGTTTCGTTTCTATTTATGAGAGACTTATGTATCCGTATTGGGTCTGGCTGCATAGATGAATGCTTCAAAGGAATATATAAAGCCTATGTTTTGAATTGCCACTTTGTAAATGCTGTGAAACTTAAACATATCCATTTTCTTGGCAATTGTGTCATTGAACTTCTTGGCGTGGATCTTCCAACTGCATATCAACATGCCTTCACTTACATCCGGCAACTGGCTACAATTTTAAGGGAGGCACTTAATACAAAGACTAAGGAATCTTTTCGCAAGGTTTATGAGTGGAAATTCATAAACTGCCTTGAACTTTGGACCGGTGCTATCTGTGCCTACAGTTCAGAGTCAGACTTTAAGCAACTTGCATATCCATTGACCCAAATAATTTCTGGGGCAGCTCGTCTGGTTCCCACAGCCAGATATTTTCCCCTTAGGTTGAGATGTGTAAGAATGCTGAACCAGATTGCAGCTTCTACACATTCTTTTATACCAGTGTCTATGCTCCTTTTGGACATGCTGGAGATGAAAGAATTGAATAGACCCCCAACGGGAGGTGTTGGCAAAGCTGTTGATTTACGCAGTATACTGAAGGTTAGCAAATTGACCCTAAAGACACGAGCATTTCAAGAGGCATGTGTTATTTCTGTGGTTGAAGAGCTTGCTGAACACTTGGCACAGTGGAGTTATTCTGTTGCATTCTTGGAGTTGTCTTTTATTCCACTTGTGAGGTTGCGTAGCTTTTGCAAATCGACCAGAGTTGAGAGGTTTCGAAAAGAAATGAGGCAGCTTATATGCCAGATTGAGGCTAGTTCTGACTACCTGAATGGAAAGCGCCTGTCAATTTCCTTTTTACCTAATGACCCTGCAGCAGCATCTTTCCTCGAGGATGAAAAAAAGCCAGCTTCTAGTGCACTGTCAAAGTACGTCGTGACACTACACCAGAGAGCAGAGCAAAAAAATAATTCATTAATGGAATCCAGTGTTCTTGTGGGAGACGAATCCTCTAAATTTGGGAATGAAATATCAGAAAGTGATGAAGAGGATGCGAGAAAGAATGAGGACGGTGATGCGGTCTTTAGTTCATCGTGGTTACCTGGAAATGACTCTAAGATAAAACAACCTACAGAAACAAAAAGAAAGAGGAAAAAGCAGCAGAAAGAGAAAGCCATTGACGACGATGTTGTGGAGGACTTAGTACTTAGTTCTGACGAAGATTTGCCTTCAAGCCACAGCCCTTCTGCTAGGAAAAATGACGGCATAGATCATTCACCTCCAAAACAAAAACGCAAGCAGAAACACAGGAAATAA
>Glyma15g04450.3 sequence type=CDS gene model=Glyma15g04450 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGACGTATCGGAGAGGACTTTGGATGGAGAGAATAGTGTAAGACGAAGGAGCAGAAAAAAATCCATGTCTGGAACTGCGAGTGGAGCACGAGAGCATATGGAGCAATTGCAGAAACTTCAGGAGAAGGACCCAGAATTTTATGAGTTCTTGAAAGAGCATGACAATGAGTTGCTTCAATTCAGTGATGATGATGTAGATGAAGATGTGGGTACTAACACAGAAGATGGAAATCTACAGCTAGATGAGGAGGTTAGTGAGGATGAGATTGAAGAGAAGGAACAAAAATCCTCTAAGGAAGTTATAACTACTTCTATGGTTGATTTGTGGGGCAAATCAATTCAAGAAAGTGGGAGCTTGAGTGCGGTTCGTTCACTGATGAGGGCTTTCAGGACAGCATGTCACTATGGTGATGATGGGGGGAATGAATCTATGGCAAAGCTTAGTGTAATAATGTCTAGCACTGTATTCAACAAAATAATGTTGACTGTACTTACTGAAATGGATGGAATACTAAGAAATTTGTTGAAGCTTCCTGCTTCTGGTGGAAAGAAAGAGACCATAACAGATTTGATGGCCACGAAGCATTGGAAGAGTTATGGCCATTTAGTAAAGTCTTACCTTGGAAACGCTCTCCATGTTTTGAACCAAATGACTGACACAGAAATGATATCGTATACTTTACGTCGGCTGAAATATTCTTTGTTGTTTTTGGCTGCTTTTCCTTCACTCCTTAGAAAATACATTAAGGTGGTCCTTCATTTCTGGGGTACTGGTGGAGGTGCCCTTCCGGTTGTTTCGTTTCTATTTATGAGAGACTTATGTATCCGTATTGGGTCTGGCTGCATAGATGAATGCTTCAAAGGAATATATAAAGCCTATGTTTTGAATTGCCACTTTGTAAATGCTGTGAAACTTAAACATATCCATTTTCTTGGCAATTGTGTCATTGAACTTCTTGGCGTGGATCTTCCAACTGCATATCAACATGCCTTCACTTACATCCGGCAACTGGCTACAATTTTAAGGGAGGCACTTAATACAAAGACTAAGGAATCTTTTCGCAAGGTTTATGAGTGGAAATTCATAAACTGCCTTGAACTTTGGACCGGTGCTATCTGTGCCTACAGTTCAGAGTCAGACTTTAAGCAACTTGCATATCCATTGACCCAAATAATTTCTGGGGCAGCTCGTCTGGTTCCCACAGCCAGATATTTTCCCCTTAGGTTGAGATGTGTAAGAATGCTGAACCAGATTGCAGCTTCTACACATTCTTTTATACCAGTGTCTATGCTCCTTTTGGACATGCTGGAGATGAAAGAATTGAATAGACCCCCAACGGGAGGTGTTGGCAAAGCTGTTGATTTACGCAGTATACTGAAGGTTAGCAAATTGACCCTAAAGACACGAGCATTTCAAGAGGCATGTGTTATTTCTGTGGTTGAAGAGCTTGCTGAACACTTGGCACAGTGGAGTTATTCTGTTGCATTCTTGGAGTTGTCTTTTATTCCACTTGTGAGGTTGCGTAGCTTTTGCAAATCGACCAGAGTTGAGAGGTTTCGAAAAGAAATGAGGCAGCTTATATGCCAGATTGAGGCTAGTTCTGACTACCTGAATGGAAAGCGCCTGTCAATTTCCTTTTTACCTAATGACCCTGCAGCAGCATCTTTCCTCGAGGATGAAAAAAAGCCAGCTTCTAGTGCACTGTCAAAGTACGTCGTGACACTACACCAGAGAGCAGAGCAAAAAAATAATTCATTAATGGAATCCAGTGTTCTTGTGGGAGACGAATCCTCTAAATTTGGGAATGAAATATCAGAAAGTGATGAAGAGGATGCGAGAAAGAATGAGGACGGTGATGCGGTCTTTAGTTCATCGTGGTTACCTGGAAATGACTCTAAGATAAAACAACCTACAGAAACAAAAAGAAAGAGGAAAAAGCAGCAGAAAGAGAAAGCCATTGACGACGATGTTGTGGAGGACTTAGTACTTAGTTCTGACGAAGATTTGCCTTCAAGCCACAGCCCTTCTGCTAGGAAAAATGACGGCATAGATCATTCACCTCCAAAACAAAAACGCAAGCAGAAACACAGGAAATAA
Predicted protein sequences of Glyma15g04450
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma15g04450.2 sequence type=predicted peptide gene model=Glyma15g04450 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MCKQVFYSTNMDVSERTLDGENSVRRRSRKKSMSGTASGAREHMEQLQKLQEKDPEFYEFLKEHDNELLQFSDDDVDEDVGTNTEDGNLQLDEEVSEDEIEEKEQKSSKEVITTSMVDLWGKSIQESGSLSAVRSLMRAFRTACHYGDDGGNESMAKLSVIMSSTVFNKIMLTVLTEMDGILRNLLKLPASGGKKETITDLMATKHWKSYGHLVKSYLGNALHVLNQMTDTEMISYTLRRLKYSLLFLAAFPSLLRKYIKVVLHFWGTGGGALPVVSFLFMRDLCIRIGSGCIDECFKGIYKAYVLNCHFVNAVKLKHIHFLGNCVIELLGVDLPTAYQHAFTYIRQLATILREALNTKTKESFRKVYEWKFINCLELWTGAICAYSSESDFKQLAYPLTQIISGAARLVPTARYFPLRLRCVRMLNQIAASTHSFIPVSMLLLDMLEMKELNRPPTGGVGKAVDLRSILKVSKLTLKTRAFQEACVISVVEELAEHLAQWSYSVAFLELSFIPLVRLRSFCKSTRVERFRKEMRQLICQIEASSDYLNGKRLSISFLPNDPAAASFLEDEKKPASSALSKYVVTLHQRAEQKNNSLMESSVLVGDESSKFGNEISESDEEDARKNEDGDAVFSSSWLPGNDSKIKQPTETKRKRKKQQKEKAIDDDVVEDLVLSSDEDLPSSHSPSARKNDGIDHSPPKQKRKQKHRK*
>Glyma15g04450.3 sequence type=predicted peptide gene model=Glyma15g04450 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MDVSERTLDGENSVRRRSRKKSMSGTASGAREHMEQLQKLQEKDPEFYEFLKEHDNELLQFSDDDVDEDVGTNTEDGNLQLDEEVSEDEIEEKEQKSSKEVITTSMVDLWGKSIQESGSLSAVRSLMRAFRTACHYGDDGGNESMAKLSVIMSSTVFNKIMLTVLTEMDGILRNLLKLPASGGKKETITDLMATKHWKSYGHLVKSYLGNALHVLNQMTDTEMISYTLRRLKYSLLFLAAFPSLLRKYIKVVLHFWGTGGGALPVVSFLFMRDLCIRIGSGCIDECFKGIYKAYVLNCHFVNAVKLKHIHFLGNCVIELLGVDLPTAYQHAFTYIRQLATILREALNTKTKESFRKVYEWKFINCLELWTGAICAYSSESDFKQLAYPLTQIISGAARLVPTARYFPLRLRCVRMLNQIAASTHSFIPVSMLLLDMLEMKELNRPPTGGVGKAVDLRSILKVSKLTLKTRAFQEACVISVVEELAEHLAQWSYSVAFLELSFIPLVRLRSFCKSTRVERFRKEMRQLICQIEASSDYLNGKRLSISFLPNDPAAASFLEDEKKPASSALSKYVVTLHQRAEQKNNSLMESSVLVGDESSKFGNEISESDEEDARKNEDGDAVFSSSWLPGNDSKIKQPTETKRKRKKQQKEKAIDDDVVEDLVLSSDEDLPSSHSPSARKNDGIDHSPPKQKRKQKHRK*