Glyma15g04280 - SoyBase

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Report for Sequence Feature Glyma15g04280

Feature Type:	gene_model
Chromosome:	Gm15
Start:	2999161
stop:	3001512
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g04280

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G07570	AT	Annotation by Michelle Graham. TAIR10: Protein kinase superfamily protein \| chr1:2331369-2333210 REVERSE LENGTH=410	SoyBase	E_val: 0	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0006499	GO-bp	Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0004713	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein tyrosine kinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
KOG1187	KOG	Serine/threonine protein kinase	JGI		ISS
PTHR24420	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24420:SF861	Panther		JGI		ISS
PF00069	PFAM	Protein kinase domain	JGI		ISS
UniRef100_B5L8D2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein kinase 1b n=1 Tax=Solanum lycopersicum RepID=B5L8D2_SOLLC	SoyBase	E_val: 0	ISS
UniRef100_C6TMI2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6TMI2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g04280

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g04280

Paralog	Evidence	Comments
Glyma13g41130	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g04280 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g038000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g04280

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g04280

Limit To All Plant Sequences

>Glyma15g04280.1   sequence type=CDS   gene model=Glyma15g04280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAGTTTGTTTGAGCGCCCAAATTAAAGCTGAAAGCCCATATAACACTGGGTTCAATTCAAAGTATGTGAGTACGGATGGAAATGATTTCGGCAGCACAAACGATAAGGTTTCAGCAAACTCAATTCCTCAAACTCCTCGGAGTGAGGGTGAGATCTTGCGGTCATCCAATTTGAAGAGCTTTCCCTTGTCAGAACTTAAGACGGCCACTAGAAATTTCCGGTGGATCGATGAGAATTCATTGACTGCTACCAAACCTGGCACTGGCATTGTTATTGCTGTTAAAAGACTTAATCAAGATGGCATCCAGGGTCACAGGGAGTGGTTGGCTGAAGTCAACTATCTTGGACAGCTTTCTCATCCTCATCTAGTGAGATTGATTGGGTTTTGCCTTGAAGATGAACATCGCCTTCTCGTCTACGAATTTATGCCACGTGGAAGCTTGGAAAACCATTTGTTCAGGAGAGGCTCATATTTTCAACCACTTTCTTGGAGCTTACGTTTGAAGGTAGCTCTTGATGCTGCCAAAGGGCTTGCATTTCTCCACAGTGCAGAAGCAAAAGTGATATATAGAGATTTTAAGACTTCAAATATCTTGCTGGATTCAAAATATAATGCAAAACTTTCTGATTTTGGGCTGGCAAAGGATGGACCAACAGGTGACAAAAGTCATGTCTCCACCAGGGTAATGGGAACCTACGGATACGCAGCACCTGAATATCTAGCCACAGGTCATCTTACTGCTAAGAGCGATGTCTATAGTTTTGGGGTTGTCCTGCTGGAAATGTTGTCTGGCAAGAGGGCTGTTGACAAGAATAGACCATCTGGACAACACAATTTGGTGGAATGGGCTAAACCTTACCTGGCAAACAAGCGTAAGATATTTCGTGTGTTGGACACCCGGCTCGAAGGACAATATTCAACAGATGATGCCTGTAAGCTAGCCACCCTTGCCTTGCGGTGCCTATCAATAGAATCCAAGTTCAGGCCAAACATGGATGAAGTGGTTACAACATTGGAGCAGCTGCAAGTTCCTAATGTAAATGGAGGCCATCAAAATGGGTCTCGTGTTCGTAGAAGAAGTGCTGATGTGAATAGAGGCTATCAAAATCCTTCTGTTAATGGATCTCGAGTTCGTAGAAGAAGTGCCGATGATATTAGCCCTATGGAGACTCCCACAGCTTATCCCCGGCCTTCTGCATCCCCTCTCTATACTTGA

Predicted protein sequences of Glyma15g04280

Limit To All Plant Sequences

>Glyma15g04280.1   sequence type=predicted peptide   gene model=Glyma15g04280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGVCLSAQIKAESPYNTGFNSKYVSTDGNDFGSTNDKVSANSIPQTPRSEGEILRSSNLKSFPLSELKTATRNFRWIDENSLTATKPGTGIVIAVKRLNQDGIQGHREWLAEVNYLGQLSHPHLVRLIGFCLEDEHRLLVYEFMPRGSLENHLFRRGSYFQPLSWSLRLKVALDAAKGLAFLHSAEAKVIYRDFKTSNILLDSKYNAKLSDFGLAKDGPTGDKSHVSTRVMGTYGYAAPEYLATGHLTAKSDVYSFGVVLLEMLSGKRAVDKNRPSGQHNLVEWAKPYLANKRKIFRVLDTRLEGQYSTDDACKLATLALRCLSIESKFRPNMDEVVTTLEQLQVPNVNGGHQNGSRVRRRSADVNRGYQNPSVNGSRVRRRSADDISPMETPTAYPRPSASPLYT*

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