SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G29050 | AT | Annotation by Michelle Graham. TAIR10: RHOMBOID-like 1 | chr2:12478245-12480121 FORWARD LENGTH=389 | SoyBase | E_val: 0 | ISS |
| GO:0006508 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteolysis | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0016021 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane | SoyBase | N/A | ISS |
| GO:0004252 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: serine-type endopeptidase activity | SoyBase | N/A | ISS |
| KOG2289 | KOG | Rhomboid family proteins | JGI | ISS | |
| PTHR22936 | Panther | RHOMBOID-RELATED | JGI | ISS | |
| PF01694 | PFAM | Rhomboid family | JGI | ISS | |
| UniRef100_G7IHP5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Rhomboid family protein AtRBL1 n=1 Tax=Medicago truncatula RepID=G7IHP5_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1MDE7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MDE7_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma15g04230 not represented in the dataset |
Glyma15g04230 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma13g41170 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.15g037600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma15g04230.1 sequence type=CDS gene model=Glyma15g04230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGGAGGGACCCATCTTCTGCCACCGTCGAGGTGCAGGTTCATCCGCGCCGCGACACCATCGCCGGTTGTGGGCGGAGGCTCTCTCCTTCACCGCCGAGCCCCCCCGCCGTGCGCGATCGTGACTTCAGCCTCTTCAAGCGCTGGTTCCCATGGCTGGTCCCCACCTTCGTGGTGGCCAACATCGTCGTCTTCATCGTCACGATGTATATAAACGATTGTCCTAAGCATTCCTTTTACGGTTCCTGCGTTGCCTCTTTTCTCGGAAGATTCTCATTTCAACCTCTTAAAGAGAACCCTCTCTTTGGTCCTTCTTCCTCCACATTAGAGAAGATGGGTGCTCTTGAAGTGGGTAAAGTGATTCATAGACACCAGGTTTGGCGCCTTTTCTCTTGTATATGGTTGCACGGTGGGGTTGTTCATCTGCTTGCCAACATGTTGAGTCTTGTTTTCATTGGAATTCGCCTAGAGCAAGAATTTGGATTTGTTCGAATTGGATTTCTGTATGTGATATCCGGTTTTGGAGGCAGTTTGCTGTCTGCTCTATTCATACAAGAGGGAATCTCGGTTGGTGCTTCTGGTGCATTATTTGGCTTACTGGGAGGCATGTTATCGGAGCTCTTGATAAATTGGACAATATATGCCAATAAGTTTGCAGCGTTACTGACTCTTATAGTCATCGTTGTAATCAATTTAGCTGTTGGAATTCTTCCACATGTGGACAATTTTGCTCATATTGGAGGATTTGTCTCTGGCTTTCTTCTTGGGTTTATCTTTCTGATTCGCCCCCAGTTCAAATGGGTTAGTAGTAGACACAGGAATTCTCACTCTTCAGCTGCTGCACCTTCGGTGAAATATAAGCACAAACCTTATCAGTATGCATTGTGGGTCATATCCTTCATACTACTGATTGCCGGGTTGGTTACTGGGCTGGTTTTGCTTCTTCGAAGTGCTAACTTGAATGATCGTTGCTCATGGTGTCATTACTTAAGTTGTATCCCTACCTCAAAATGGAGCTGCAAATCACAACAACTTTATTGTGAGTCAACCCAAATAGGAAACCAACTCAACATAACATGCCTGAGCAATGGGAGAAGTGACATGTTTCCTCTTTCAAATACTAGCACTTCGGAGGCTCAACAACAGCTATGCTCTCGACTTTGCAGTTGA
>Glyma15g04230.1 sequence type=predicted peptide gene model=Glyma15g04230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGRDPSSATVEVQVHPRRDTIAGCGRRLSPSPPSPPAVRDRDFSLFKRWFPWLVPTFVVANIVVFIVTMYINDCPKHSFYGSCVASFLGRFSFQPLKENPLFGPSSSTLEKMGALEVGKVIHRHQVWRLFSCIWLHGGVVHLLANMLSLVFIGIRLEQEFGFVRIGFLYVISGFGGSLLSALFIQEGISVGASGALFGLLGGMLSELLINWTIYANKFAALLTLIVIVVINLAVGILPHVDNFAHIGGFVSGFLLGFIFLIRPQFKWVSSRHRNSHSSAAAPSVKYKHKPYQYALWVISFILLIAGLVTGLVLLLRSANLNDRCSWCHYLSCIPTSKWSCKSQQLYCESTQIGNQLNITCLSNGRSDMFPLSNTSTSEAQQQLCSRLCS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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