Glyma15g04140 - SoyBase

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Report for Sequence Feature Glyma15g04140

Feature Type:	gene_model
Chromosome:	Gm15
Start:	2899955
stop:	2903138
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g04140

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G29070	AT	Annotation by Michelle Graham. TAIR10: Ubiquitin fusion degradation UFD1 family protein \| chr2:12487797-12489335 FORWARD LENGTH=312	SoyBase	E_val: 7.00E-145	ISS
GO:0006511	GO-bp	Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
KOG1816	KOG	Ubiquitin fusion-degradation protein	JGI		ISS
PTHR12555	Panther	UBIQUITIN FUSION DEGRADATON PROTEIN 1	JGI		ISS
PF03152	PFAM	Ubiquitin fusion degradation protein UFD1	JGI		ISS
UniRef100_B9T677	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ubiquitin fusion degradaton protein, putative n=1 Tax=Ricinus communis RepID=B9T677_RICCO	SoyBase	E_val: 1.00E-154	ISS
UniRef100_I1MDD7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MDD7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g04140

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g04140

Paralog	Evidence	Comments
Glyma13g41280	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g04140 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g036700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g04140

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma15g04140

Limit To All Plant Sequences

>Glyma15g04140.2   sequence type=transcript   gene model=Glyma15g04140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCTTGGTTTGATCCAGCCCATGAAAGGGAGAGATTGCACACAGAAAAAAGAAAAACAATCACAGTCCTAACCTATAAAAGCTGTAACCGTGTGTTCTTCCGAAGCATGTAAGCGGTGTGGTGACTCTCGGGTTTTACAACGCAGCTTTTCATCGTTCAGTCTAAGGCACACGCACACCATCAAGTCATCTTCTGGTCTGCTGATATCTATGGCATATTACAGAGATGATCGATTTGCAACATTTGAACAGTTTTATCGTTGTTACCCTGTCTCCTTCATTGAGAAGGTACGATCACTGATTTAGCCTTATGTCAATAATAACTTCCTTTGCTAGTTTCTTTCAGAGGAAATAAAAGAAGAGGTGAGAAAATTTTGAAATTTGAATTGAGGAGAAAAATTTTCTCTTCTATCCTCCTATTTTCTTTCCTCTCATCCAAACATGTCATAAACTATTTCTATTCACAAAGTCAACATATTCCTTGGGATTTATATTTGGGCCTGTGATTGATCAAAGGGGTCTGATCTGTGATCACTGGCTATAGATTGTGCCGACCAAAAAAAACTGGCTATAGCTTGCTGACTATGCTGGTTTATGAGTGGCATTGCAACATCCTTTATATGCATACAAATTTGTGCTGCGCACTCTTTTTAAGAAAAAGAAAAATGTTTACATCTGCATGTGATTCAAATTCTTAAACTGATTCCTTGTCCTCTTAATTCTATGCAGCCAGATCTGGAAAAGGGTGATAAAAGTATGTACCCACAGCTTACATTTCACTACTCTGATTCAAAACATGTGTGAAACTTTGATATCTTGTTTTTGCCAATAGAATTTCTTATGACAATTTTTGTTGCCTTTAGTTATCATGCCTCCCTCAGCCCTTGATCGCCTTGGTAAGTCATTATTTGTCTGGTTGCAACAATTTGATTCATTCTTTGTCCTGCTAAATTACTAGGCTTATTCATCTAAACATCTATCAAGATTTTTACTAGTTAAGTTTTTCAGCGTCTTTGCACATAGAGTACCCCATGTTATTTCAAATTAAAAATCCTTCTGCTGAAAGAGTTACTCACTGTGGGGTGCTAGAATTCGTATCTGATGAAGGGATCATATATATCCCATACTGGATGATGGAAAATATGCTCCTCCAAGAGGGAGACATTGTAAAAGTGAAAAACACCAACCTTGCAAAAGGAACGTATGTGAAGCTGCAGCCTCACACAAAGGATTTTTTGGATATCTCCAATCCAAAAGCCATCTTAGAGACTACACTTAGGAGCTACTCATGTTTAACAACTGGTGACACAATAATGGTTCCTTATAACAACAAGAAGTATTACATTGACATAGTTGAAACTAAACCCTCTCCTGCAGTCAGTATAATTGAAACAGACTGTGAAGTTGATTTTGCTCCACCTCTTGATTATAAAGAACCTGAGAAACAAGCAAAACCTGTTGTATTTGACAGGAAACGACCAAAAGTTGAAGATGAGCCGCCAACAAAGATTGCCCGGTTGACTCCATTCACTGGTTCTGGAAGACGTTTGGATGGTAAACCCTCAGCACCATCAGTTGAACAAACATCCTCTCCAGAGTTGAAACAGAGACAAACTGACAAAGAAATCAAGGGTTCTGATTCTAAGTCATCAAATACCGTGTCTCGTAGACATTCAGGAAAGCTTGTGTTTGGGTCAAATGCAACTACATCTGACATTCAAACAACACCTAAGGTTTCTCAAGAAAACACCAGTCAAGAGAAATCTCAGAAGGAAGAAGAGCCAAAATTCAAAGCCTTCACGGGAAAGAAGTATTCATTAAAAAGTTGATCCTTGATGGGCTATTTTTGTGTTGTTTTTTCTTTTGATTTACGGAATATTAGTTGAGACAACATTGGTTGGATCTTAATCCATATTCCACTCTTGCATATTCATGTTTTTTTTATGTCATATATATTCGTTAGATTTACCTCGGGAAACAAAAATTTATCACTTTTGACAGTCCAAGGAATACCTTAGTCCAAGATTACAACTACAAGATCATATAGAATTTTCAAGAGGATGATTGGAGTCTTGTTTGATTTATTTTCCATGTTTCAGTGTCATCTTTGCAGCTACATTAACCAGTTTCCTGCCACTGGCAGTTGGTGTGGACTTAAAATCAGGCCGTATTTGTAATTCTCTACAAGTCATTTATTTTTTTGATGTAATTGGAAATCATTCCTTAAATCTTTTGTACGATGCCCCATGATTAGAAAAGCCTTACAGCACAGCTCATGTTAGCCCTTAGTACAATTGCCAACGCTGGAGGGAAGAATCTTGTTTTTGCTTTTCAACCATTATATAATGCGCCTATTCTGCCCAGCCTTTTGTTTCAGCAGTTAAACGGAATTTGTATAAAACAATCGTGGGGATAAT

Coding sequences of Glyma15g04140

Limit To All Plant Sequences

>Glyma15g04140.1   sequence type=CDS   gene model=Glyma15g04140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATATTACAGAGATGATCGATTTGCAACATTTGAACAGTTTTATCGTTGTTACCCTGTCTCCTTCATTGAGAAGCCAGATCTGGAAAAGGGTGATAAAATTATCATGCCTCCCTCAGCCCTTGATCGCCTTGCGTCTTTGCACATAGAGTACCCCATGTTATTTCAAATTAAAAATCCTTCTGCTGAAAGAGTTACTCACTGTGGGGTGCTAGAATTCGTATCTGATGAAGGGATCATATATATCCCATACTGGATGATGGAAAATATGCTCCTCCAAGAGGGAGACATTGTAAAAGTGAAAAACACCAACCTTGCAAAAGGAACGTATGTGAAGCTGCAGCCTCACACAAAGGATTTTTTGGATATCTCCAATCCAAAAGCCATCTTAGAGACTACACTTAGGAGCTACTCATGTTTAACAACTGGTGACACAATAATGGTTCCTTATAACAACAAGAAGTATTACATTGACATAGTTGAAACTAAACCCTCTCCTGCAGTCAGTATAATTGAAACAGACTGTGAAGTTGATTTTGCTCCACCTCTTGATTATAAAGAACCTGAGAAACAAGCAAAACCTGTTGTATTTGACAGGAAACGACCAAAAGTTGAAGATGAGCCGCCAACAAAGATTGCCCGGTTGACTCCATTCACTGGTTCTGGAAGACGTTTGGATGGTAAACCCTCAGCACCATCAGTTGAACAAACATCCTCTCCAGAGTTGAAACAGAGACAAACTGACAAAGAAATCAAGGGTTCTGATTCTAAGTCATCAAATACCGTGTCTCGTAGACATTCAGGAAAGCTTGTGTTTGGGTCAAATGCAACTACATCTGACATTCAAACAACACCTAAGGTTTCTCAAGAAAACACCAGTCAAGAGAAATCTCAGAAGGAAGAAGAGCCAAAATTCAAAGCCTTCACGGGAAAGAAGTATTCATTAAAAAGTTGA

>Glyma15g04140.2   sequence type=CDS   gene model=Glyma15g04140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTATTTCAAATTAAAAATCCTTCTGCTGAAAGAGTTACTCACTGTGGGGTGCTAGAATTCGTATCTGATGAAGGGATCATATATATCCCATACTGGATGATGGAAAATATGCTCCTCCAAGAGGGAGACATTGTAAAAGTGAAAAACACCAACCTTGCAAAAGGAACGTATGTGAAGCTGCAGCCTCACACAAAGGATTTTTTGGATATCTCCAATCCAAAAGCCATCTTAGAGACTACACTTAGGAGCTACTCATGTTTAACAACTGGTGACACAATAATGGTTCCTTATAACAACAAGAAGTATTACATTGACATAGTTGAAACTAAACCCTCTCCTGCAGTCAGTATAATTGAAACAGACTGTGAAGTTGATTTTGCTCCACCTCTTGATTATAAAGAACCTGAGAAACAAGCAAAACCTGTTGTATTTGACAGGAAACGACCAAAAGTTGAAGATGAGCCGCCAACAAAGATTGCCCGGTTGACTCCATTCACTGGTTCTGGAAGACGTTTGGATGGTAAACCCTCAGCACCATCAGTTGAACAAACATCCTCTCCAGAGTTGAAACAGAGACAAACTGACAAAGAAATCAAGGGTTCTGATTCTAAGTCATCAAATACCGTGTCTCGTAGACATTCAGGAAAGCTTGTGTTTGGGTCAAATGCAACTACATCTGACATTCAAACAACACCTAAGGTTTCTCAAGAAAACACCAGTCAAGAGAAATCTCAGAAGGAAGAAGAGCCAAAATTCAAAGCCTTCACGGGAAAGAAGTATTCATTAAAAAGTTGA

Predicted protein sequences of Glyma15g04140

Limit To All Plant Sequences

>Glyma15g04140.1   sequence type=predicted peptide   gene model=Glyma15g04140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAYYRDDRFATFEQFYRCYPVSFIEKPDLEKGDKIIMPPSALDRLASLHIEYPMLFQIKNPSAERVTHCGVLEFVSDEGIIYIPYWMMENMLLQEGDIVKVKNTNLAKGTYVKLQPHTKDFLDISNPKAILETTLRSYSCLTTGDTIMVPYNNKKYYIDIVETKPSPAVSIIETDCEVDFAPPLDYKEPEKQAKPVVFDRKRPKVEDEPPTKIARLTPFTGSGRRLDGKPSAPSVEQTSSPELKQRQTDKEIKGSDSKSSNTVSRRHSGKLVFGSNATTSDIQTTPKVSQENTSQEKSQKEEEPKFKAFTGKKYSLKS*

>Glyma15g04140.2   sequence type=predicted peptide   gene model=Glyma15g04140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLFQIKNPSAERVTHCGVLEFVSDEGIIYIPYWMMENMLLQEGDIVKVKNTNLAKGTYVKLQPHTKDFLDISNPKAILETTLRSYSCLTTGDTIMVPYNNKKYYIDIVETKPSPAVSIIETDCEVDFAPPLDYKEPEKQAKPVVFDRKRPKVEDEPPTKIARLTPFTGSGRRLDGKPSAPSVEQTSSPELKQRQTDKEIKGSDSKSSNTVSRRHSGKLVFGSNATTSDIQTTPKVSQENTSQEKSQKEEEPKFKAFTGKKYSLKS*

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