SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research



Report for Sequence Feature Glyma15g04140

Feature Type:gene_model
Chromosome:Gm15
Start:2899955
stop:2903138
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G29070AT Annotation by Michelle Graham. TAIR10: Ubiquitin fusion degradation UFD1 family protein | chr2:12487797-12489335 FORWARD LENGTH=312 SoyBaseE_val: 7.00E-145ISS
GO:0006511GO-bp Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
KOG1816 KOG Ubiquitin fusion-degradation protein JGI ISS
PTHR12555Panther UBIQUITIN FUSION DEGRADATON PROTEIN 1 JGI ISS
PF03152PFAM Ubiquitin fusion degradation protein UFD1 JGI ISS
UniRef100_B9T677UniRef Annotation by Michelle Graham. Most informative UniRef hit: Ubiquitin fusion degradaton protein, putative n=1 Tax=Ricinus communis RepID=B9T677_RICCO SoyBaseE_val: 1.00E-154ISS
UniRef100_I1MDD7UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MDD7_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma13g41280 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.15g036700 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma15g04140.2   sequence type=transcript   gene model=Glyma15g04140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCTTGGTTTGATCCAGCCCATGAAAGGGAGAGATTGCACACAGAAAAAAGAAAAACAATCACAGTCCTAACCTATAAAAGCTGTAACCGTGTGTTCTTCCGAAGCATGTAAGCGGTGTGGTGACTCTCGGGTTTTACAACGCAGCTTTTCATCGTTCAGTCTAAGGCACACGCACACCATCAAGTCATCTTCTGGTCTGCTGATATCTATGGCATATTACAGAGATGATCGATTTGCAACATTTGAACAGTTTTATCGTTGTTACCCTGTCTCCTTCATTGAGAAGGTACGATCACTGATTTAGCCTTATGTCAATAATAACTTCCTTTGCTAGTTTCTTTCAGAGGAAATAAAAGAAGAGGTGAGAAAATTTTGAAATTTGAATTGAGGAGAAAAATTTTCTCTTCTATCCTCCTATTTTCTTTCCTCTCATCCAAACATGTCATAAACTATTTCTATTCACAAAGTCAACATATTCCTTGGGATTTATATTTGGGCCTGTGATTGATCAAAGGGGTCTGATCTGTGATCACTGGCTATAGATTGTGCCGACCAAAAAAAACTGGCTATAGCTTGCTGACTATGCTGGTTTATGAGTGGCATTGCAACATCCTTTATATGCATACAAATTTGTGCTGCGCACTCTTTTTAAGAAAAAGAAAAATGTTTACATCTGCATGTGATTCAAATTCTTAAACTGATTCCTTGTCCTCTTAATTCTATGCAGCCAGATCTGGAAAAGGGTGATAAAAGTATGTACCCACAGCTTACATTTCACTACTCTGATTCAAAACATGTGTGAAACTTTGATATCTTGTTTTTGCCAATAGAATTTCTTATGACAATTTTTGTTGCCTTTAGTTATCATGCCTCCCTCAGCCCTTGATCGCCTTGGTAAGTCATTATTTGTCTGGTTGCAACAATTTGATTCATTCTTTGTCCTGCTAAATTACTAGGCTTATTCATCTAAACATCTATCAAGATTTTTACTAGTTAAGTTTTTCAGCGTCTTTGCACATAGAGTACCCCATGTTATTTCAAATTAAAAATCCTTCTGCTGAAAGAGTTACTCACTGTGGGGTGCTAGAATTCGTATCTGATGAAGGGATCATATATATCCCATACTGGATGATGGAAAATATGCTCCTCCAAGAGGGAGACATTGTAAAAGTGAAAAACACCAACCTTGCAAAAGGAACGTATGTGAAGCTGCAGCCTCACACAAAGGATTTTTTGGATATCTCCAATCCAAAAGCCATCTTAGAGACTACACTTAGGAGCTACTCATGTTTAACAACTGGTGACACAATAATGGTTCCTTATAACAACAAGAAGTATTACATTGACATAGTTGAAACTAAACCCTCTCCTGCAGTCAGTATAATTGAAACAGACTGTGAAGTTGATTTTGCTCCACCTCTTGATTATAAAGAACCTGAGAAACAAGCAAAACCTGTTGTATTTGACAGGAAACGACCAAAAGTTGAAGATGAGCCGCCAACAAAGATTGCCCGGTTGACTCCATTCACTGGTTCTGGAAGACGTTTGGATGGTAAACCCTCAGCACCATCAGTTGAACAAACATCCTCTCCAGAGTTGAAACAGAGACAAACTGACAAAGAAATCAAGGGTTCTGATTCTAAGTCATCAAATACCGTGTCTCGTAGACATTCAGGAAAGCTTGTGTTTGGGTCAAATGCAACTACATCTGACATTCAAACAACACCTAAGGTTTCTCAAGAAAACACCAGTCAAGAGAAATCTCAGAAGGAAGAAGAGCCAAAATTCAAAGCCTTCACGGGAAAGAAGTATTCATTAAAAAGTTGATCCTTGATGGGCTATTTTTGTGTTGTTTTTTCTTTTGATTTACGGAATATTAGTTGAGACAACATTGGTTGGATCTTAATCCATATTCCACTCTTGCATATTCATGTTTTTTTTATGTCATATATATTCGTTAGATTTACCTCGGGAAACAAAAATTTATCACTTTTGACAGTCCAAGGAATACCTTAGTCCAAGATTACAACTACAAGATCATATAGAATTTTCAAGAGGATGATTGGAGTCTTGTTTGATTTATTTTCCATGTTTCAGTGTCATCTTTGCAGCTACATTAACCAGTTTCCTGCCACTGGCAGTTGGTGTGGACTTAAAATCAGGCCGTATTTGTAATTCTCTACAAGTCATTTATTTTTTTGATGTAATTGGAAATCATTCCTTAAATCTTTTGTACGATGCCCCATGATTAGAAAAGCCTTACAGCACAGCTCATGTTAGCCCTTAGTACAATTGCCAACGCTGGAGGGAAGAATCTTGTTTTTGCTTTTCAACCATTATATAATGCGCCTATTCTGCCCAGCCTTTTGTTTCAGCAGTTAAACGGAATTTGTATAAAACAATCGTGGGGATAAT

>Glyma15g04140.1   sequence type=CDS   gene model=Glyma15g04140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATATTACAGAGATGATCGATTTGCAACATTTGAACAGTTTTATCGTTGTTACCCTGTCTCCTTCATTGAGAAGCCAGATCTGGAAAAGGGTGATAAAATTATCATGCCTCCCTCAGCCCTTGATCGCCTTGCGTCTTTGCACATAGAGTACCCCATGTTATTTCAAATTAAAAATCCTTCTGCTGAAAGAGTTACTCACTGTGGGGTGCTAGAATTCGTATCTGATGAAGGGATCATATATATCCCATACTGGATGATGGAAAATATGCTCCTCCAAGAGGGAGACATTGTAAAAGTGAAAAACACCAACCTTGCAAAAGGAACGTATGTGAAGCTGCAGCCTCACACAAAGGATTTTTTGGATATCTCCAATCCAAAAGCCATCTTAGAGACTACACTTAGGAGCTACTCATGTTTAACAACTGGTGACACAATAATGGTTCCTTATAACAACAAGAAGTATTACATTGACATAGTTGAAACTAAACCCTCTCCTGCAGTCAGTATAATTGAAACAGACTGTGAAGTTGATTTTGCTCCACCTCTTGATTATAAAGAACCTGAGAAACAAGCAAAACCTGTTGTATTTGACAGGAAACGACCAAAAGTTGAAGATGAGCCGCCAACAAAGATTGCCCGGTTGACTCCATTCACTGGTTCTGGAAGACGTTTGGATGGTAAACCCTCAGCACCATCAGTTGAACAAACATCCTCTCCAGAGTTGAAACAGAGACAAACTGACAAAGAAATCAAGGGTTCTGATTCTAAGTCATCAAATACCGTGTCTCGTAGACATTCAGGAAAGCTTGTGTTTGGGTCAAATGCAACTACATCTGACATTCAAACAACACCTAAGGTTTCTCAAGAAAACACCAGTCAAGAGAAATCTCAGAAGGAAGAAGAGCCAAAATTCAAAGCCTTCACGGGAAAGAAGTATTCATTAAAAAGTTGA

>Glyma15g04140.2   sequence type=CDS   gene model=Glyma15g04140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTATTTCAAATTAAAAATCCTTCTGCTGAAAGAGTTACTCACTGTGGGGTGCTAGAATTCGTATCTGATGAAGGGATCATATATATCCCATACTGGATGATGGAAAATATGCTCCTCCAAGAGGGAGACATTGTAAAAGTGAAAAACACCAACCTTGCAAAAGGAACGTATGTGAAGCTGCAGCCTCACACAAAGGATTTTTTGGATATCTCCAATCCAAAAGCCATCTTAGAGACTACACTTAGGAGCTACTCATGTTTAACAACTGGTGACACAATAATGGTTCCTTATAACAACAAGAAGTATTACATTGACATAGTTGAAACTAAACCCTCTCCTGCAGTCAGTATAATTGAAACAGACTGTGAAGTTGATTTTGCTCCACCTCTTGATTATAAAGAACCTGAGAAACAAGCAAAACCTGTTGTATTTGACAGGAAACGACCAAAAGTTGAAGATGAGCCGCCAACAAAGATTGCCCGGTTGACTCCATTCACTGGTTCTGGAAGACGTTTGGATGGTAAACCCTCAGCACCATCAGTTGAACAAACATCCTCTCCAGAGTTGAAACAGAGACAAACTGACAAAGAAATCAAGGGTTCTGATTCTAAGTCATCAAATACCGTGTCTCGTAGACATTCAGGAAAGCTTGTGTTTGGGTCAAATGCAACTACATCTGACATTCAAACAACACCTAAGGTTTCTCAAGAAAACACCAGTCAAGAGAAATCTCAGAAGGAAGAAGAGCCAAAATTCAAAGCCTTCACGGGAAAGAAGTATTCATTAAAAAGTTGA

>Glyma15g04140.1   sequence type=predicted peptide   gene model=Glyma15g04140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAYYRDDRFATFEQFYRCYPVSFIEKPDLEKGDKIIMPPSALDRLASLHIEYPMLFQIKNPSAERVTHCGVLEFVSDEGIIYIPYWMMENMLLQEGDIVKVKNTNLAKGTYVKLQPHTKDFLDISNPKAILETTLRSYSCLTTGDTIMVPYNNKKYYIDIVETKPSPAVSIIETDCEVDFAPPLDYKEPEKQAKPVVFDRKRPKVEDEPPTKIARLTPFTGSGRRLDGKPSAPSVEQTSSPELKQRQTDKEIKGSDSKSSNTVSRRHSGKLVFGSNATTSDIQTTPKVSQENTSQEKSQKEEEPKFKAFTGKKYSLKS*

>Glyma15g04140.2   sequence type=predicted peptide   gene model=Glyma15g04140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLFQIKNPSAERVTHCGVLEFVSDEGIIYIPYWMMENMLLQEGDIVKVKNTNLAKGTYVKLQPHTKDFLDISNPKAILETTLRSYSCLTTGDTIMVPYNNKKYYIDIVETKPSPAVSIIETDCEVDFAPPLDYKEPEKQAKPVVFDRKRPKVEDEPPTKIARLTPFTGSGRRLDGKPSAPSVEQTSSPELKQRQTDKEIKGSDSKSSNTVSRRHSGKLVFGSNATTSDIQTTPKVSQENTSQEKSQKEEEPKFKAFTGKKYSLKS*







Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo