SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G55910 | AT | Annotation by Michelle Graham. TAIR10: zinc transporter 11 precursor | chr1:20906161-20907225 FORWARD LENGTH=326 | SoyBase | E_val: 2.00E-129 | ISS |
| GO:0006812 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cation transport | SoyBase | N/A | ISS |
| GO:0030001 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metal ion transport | SoyBase | N/A | ISS |
| GO:0055085 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transmembrane transport | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0008324 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: cation transmembrane transporter activity | SoyBase | N/A | ISS |
| GO:0046873 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: metal ion transmembrane transporter activity | SoyBase | N/A | ISS |
| KOG1558 | KOG | Fe2+/Zn2+ regulated transporter | JGI | ISS | |
| PTHR11040 | Panther | ZINC-IRON TRANSPORTER | JGI | ISS | |
| PTHR11040:SF25 | Panther | JGI | ISS | ||
| PF02535 | PFAM | ZIP Zinc transporter | JGI | ISS | |
| UniRef100_I1MDD2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MDD2_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q9AWG7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Zinc transporter n=1 Tax=Medicago truncatula RepID=Q9AWG7_MEDTR | SoyBase | E_val: 3.00E-177 | ISS |
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Glyma15g04090 not represented in the dataset |
Glyma15g04090 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma13g41330 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.15g036200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma15g04090.1 sequence type=CDS gene model=Glyma15g04090 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTTCTTCCAACAAAATGAAGATCATCAAGTCAACGTTCCTTGTTTTGTGCCTCTTAGCCTCGTCGTTCCTCTGTCCAATCAAGGCTCACGGAGGAAGCGGTGATTCTCATGACGATGAATCTGATAGCGAAGGTTTGCATTCTCGGGGTCTGATCGTGGTGAAAATATGGTGTTTGATCATCTTCCTTGTGAGCACTTTCGCTGGTGGGGTTTCTCCTTACTTCTACCGTTGGAACGAGTCTTTTCTTCTTTTGGGGACTCAGTTCGCTGGTGGGGTTTTCTTGGGAACCTCTTTGATGCATTTCTTGAGCGATTCTGATGAGACCTTCCGAGACCTTACCACAAAATCTTACCCTTTTGCCTATATGCTGGCTTCATCTGGGTACCTTCTCACCATGCTTGGTGACTGTGTTATCACTTATGTCACCAGCAATAGCAAGAGGGAAGCCAAAGTGGTGGAACTGGAAGGAGGGACAACACCACCCCAAGAGCATGAGCATGACCAAGCCAGAGATCATTGCGCAGTGGCGGAGACAACAAACCCTGTATTATTGAAGACTTCTTCTGTTGGAGACACCATTCTACTCATCCTTGCACTGTGTTTCCATTCAGTTTTTGAGGGCATTGCAGTTGGAGTTGCAGGTACTAAGGCGGACGCATGGAGGAACTTATGGACAATATCCTTGCACAAGATATTTGCTGCTATTGCAATGGGAATTGCTTTGCTAAGGATGTTACCTAAGAGACCCTTTGTAACAACAGCAGCATATTCATTGGCCTTTGCTGTCTCAAGCCCCATTGGTGTGGGGATTGGCATTGCCATAAATGCCACAACACAAGGAAGCACCGCAGATTGGATGTTCGCTATAACAATGGGTATTGCTTGTGGGGTCTTCATCTATGTTGCTATCAATCATTTAATATCCAAAGGCTTCAAACCACACAAGACAACACGTTACGACACTCCCTGGTTTAGGTTTGTCGCCGTGCTTTCTGGTGTTGCTGTTATAGCTGTAGTCATGATCTGGGACTGA
>Glyma15g04090.1 sequence type=predicted peptide gene model=Glyma15g04090 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASSNKMKIIKSTFLVLCLLASSFLCPIKAHGGSGDSHDDESDSEGLHSRGLIVVKIWCLIIFLVSTFAGGVSPYFYRWNESFLLLGTQFAGGVFLGTSLMHFLSDSDETFRDLTTKSYPFAYMLASSGYLLTMLGDCVITYVTSNSKREAKVVELEGGTTPPQEHEHDQARDHCAVAETTNPVLLKTSSVGDTILLILALCFHSVFEGIAVGVAGTKADAWRNLWTISLHKIFAAIAMGIALLRMLPKRPFVTTAAYSLAFAVSSPIGVGIGIAINATTQGSTADWMFAITMGIACGVFIYVAINHLISKGFKPHKTTRYDTPWFRFVAVLSGVAVIAVVMIWD*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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