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Report for Sequence Feature Glyma15g04050

Feature Type:gene_model
Chromosome:Gm15
Start:2841288
stop:2842653
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma15g04050
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G29180AT Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 34 Blast hits to 33 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr2:12543081-12543702 FORWARD LENGTH=169 SoyBaseE_val: 4.00E-19ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0009965GO-bp Annotation by Michelle Graham. GO Biological Process: leaf morphogenesis SoyBaseN/AISS
GO:0030154GO-bp Annotation by Michelle Graham. GO Biological Process: cell differentiation SoyBaseN/AISS
GO:0045893GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009535GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_I1MDC7UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MDC7_SOYBN SoyBaseE_val: 8.00E-106ISS
UniRef100_Q10NE9UniRef Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=2 Tax=Oryza sativa RepID=Q10NE9_ORYSJ SoyBaseE_val: 2.00E-10ISS

Expression Patterns of Glyma15g04050
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g04050
ParalogEvidenceComments
Glyma13g41350 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g04050 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.15g035800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma15g04050
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma15g04050
>Glyma15g04050.1   sequence type=CDS   gene model=Glyma15g04050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGGATTGCAGCAATGGCCACCACATTTGCATCCTCATCTCCACAAATTGCAGCTTCTTCTTTTACTCTTCCACCCTTCCAATCCAAAAAGTTCATCCTTTTTCACAACCCAGTACTTCAAAAAAACAACATACTCCGACCCATTCTTCTTCCTCCTCCTCCTGCTGCTGCTGCTGCCCAAGATGCGGTGGATGCTGCGGAACAATTGTACAAAACCACCGATCAAGGGGTGGCCACAGTCGTATCCGCTCTTTTCTTTATTGCTTTCGTTGGCCTATCCGCTATCACTATTGGGGTTATCTATCTAGCAGTGACGGATTTCCTGCAGAAGAGAGAGAAAGAGAAGTTTGAGAAAGAAGAAGCTGCTAAGGGCAAGAATAAGAAGAGGAAGAAGGTGGGCAGAGCCAGGGCAGGACCTAGAGGATTTGGCCAAAAATATGTTGAAGACGAGGTTGATGAATGA
Predicted protein sequences of Glyma15g04050
>Glyma15g04050.1   sequence type=predicted peptide   gene model=Glyma15g04050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRIAAMATTFASSSPQIAASSFTLPPFQSKKFILFHNPVLQKNNILRPILLPPPPAAAAAQDAVDAAEQLYKTTDQGVATVVSALFFIAFVGLSAITIGVIYLAVTDFLQKREKEKFEKEEAAKGKNKKRKKVGRARAGPRGFGQKYVEDEVDE*






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