Glyma15g04040 - SoyBase

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Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma15g04040

Feature Type:	gene_model
Chromosome:	Gm15
Start:	2836888
stop:	2840890
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g04040

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G59610	AT	Annotation by Michelle Graham. TAIR10: Chaperone DnaJ-domain superfamily protein \| chr5:24013165-24014954 FORWARD LENGTH=268	SoyBase	E_val: 4.00E-85	ISS
GO:0006457	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein folding	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0031072	GO-mf	Annotation by Michelle Graham. GO Molecular Function: heat shock protein binding	SoyBase	N/A	ISS
GO:0051082	GO-mf	Annotation by Michelle Graham. GO Molecular Function: unfolded protein binding	SoyBase	N/A	ISS
PTHR24077	Panther	FAMILY NOT NAMED	JGI		ISS
PF00226	PFAM	DnaJ domain	JGI		ISS
UniRef100_G7IRX6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Chaperone protein DnaJ n=1 Tax=Medicago truncatula RepID=G7IRX6_MEDTR	SoyBase	E_val: 2.00E-114	ISS
UniRef100_I1MDC5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MDC5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g04040

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g04040

Paralog	Evidence	Comments
Glyma13g41360	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g04040 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g035700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g04040

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma15g04040

Limit To All Plant Sequences

>Glyma15g04040.2   sequence type=transcript   gene model=Glyma15g04040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGTTAATAGTTACCATTTTTTAAAAAAAATAAAAAATAAAATTGGTCGTGGGTTGAGTAAGTTAAACGAAATTTCAATCCAAAATGTTTGGGACTTTGTTTGGGTGATAAGAGAGCGATGTTGGTGTTCCGAAGATTGATCCAGAATCCTCCTATGAATGACGATAAGAGATGAGAGAACAAAGCTTTGGAGATAAAATGCATGGAATAACTCTCCCTCTCACTGCAACTGCAAATAGCTTCCTTTTGAGATCTCCTCTACCAAGTTGTTTCATACCCACTTGTAAAGTTAGCTACGGATTTCGTTTTAACCATTCTCAGTGGAAGCACCATAAAACAGAAGGATGGAGCAATAGGAATAGAACGATGGTGGTGAGAGCAAGGCGTAGCGAGTCACCGTATGATGTTTTGGGAGTGTCTCCATCAGCATCCGTCGACGAAATCAAAAAGGCCTATCGGAAACTTGCTCTTAAGTATCATCCCGATGTTAATAAAGAGGATAAGGCACAGGAGAAGTTTATGAGGATAAAACATGCATACAATACATTGCTAAATTCTAGTTCCCGCAAAAAATATGATTCTGGAAGTCGAGGTTATGATTTTTCTCAAGGAAGCCGAAGTAGGAATGTACAAACTGAAGAAGAATTTTATGGACTAGAGGACTTCTTTAAGGATCTTCAAGAAGAATTCAAGAACTGGGAAGCAAACGCTGCTTCACAAGGAAAGCCAAAGAGTCTATGGGAGGAATTGGCGGAAATAGGAGAAGAATTTGTGGAGTTCCTTGAGAAAGAACTTAATATTACTGATCAAAATGATGATTATAAAACGTCTCAGGGAGAAAATACATCCAACTTTTCTGGGACGGAGACACCAAGCAATAGCAGTCAAGGTGAAGCTAGCAAGGGAAACAGAAGCGTTGACGATAACATTGAGGAAATAGAAGCTACTCTGGCTCAGTTGAAAAAGGAATTAGGTTTATAGCATAAAAGGATTAGGTTCCTCCATTTGGTAGAGAGAAAAAGTCACAGAATTCATTGCCTCTCATTCTTGGCACAAGACATGGCCTTTAATTATGTGAAGGCATATCTCTTGGTGGCCATTGGGAACCAAAGTCACCAAATTGACTATGTAACACTAGGGCTTCATCTGTTTTATTTTTTTTGTTTTCGGTGTTAGTTGGGTGGGTAGGGGCAGTATAACAACACTAAAACTTAAATCATGGATGTATTTGGTGAGATGAATGCAAGAGAAATGTAAAGGGATTATAATTTATTTGGTTTGTGAAACATTTTATGCGGAACTCGAAACATTGACAAATTTATTTGGATTCTAAGGACATTTACAAACAAATGTAAAGGGTCCACTTCGTGAATTCTGAATTTCCATTTACCTTTCCCCATTATTT

>Glyma15g04040.3   sequence type=transcript   gene model=Glyma15g04040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGTTAATAGTTACCATTTTTTAAAAAAAATAAAAAATAAAATTGGTCGTGGGTTGAGTAAGTTAAACGAAATTTCAATCCAAAATGTTTGGGACTTTGTTTGGGTGATAAGAGAGCGATGTTGGTGTTCCGAAGATTGATCCAGAATCCTCCTATGAATGACGATAAGAGATGAGAGAACAAAGCTTTGGAGATAAAATGCATGGAATAACTCTCCCTCTCACTGCAACTGCAAATAGCTTCCTTTTGAGATCTCCTCTACCAAGTTGTTTCATACCCACTTGTAAAGTTAGCTACGGATTTCGTTTTAACCATTCTCAGTGGAAGCACCATAAAACAGAAGGATGGAGCAATAGGAATAGAACGATGGTGGTGAGAGCAAGGCGTAGCGAGTCACCGTATGATGTTTTGGGAGTGTCTCCATCAGCATCCGTCGACGAAATCAAAAAGGCCTATCGGAAACTTGCTCTTAAGTATCATCCCGATGTTAATAAAGAGGATAAGGCACAGGAGAAGTTTATGAGGATAAAACATGCATACAATACATTGCTAAATTCTAGTTCCCGCAAAAAATATGATTCTGGAAGTCGAGGTTATGATTTTTCTCAAGGAAGCCGAAGTAGGAATGTACAAACTGAAGAAGAATTTTATGGACTAGGTAATTTTTTGAGGGATGTTCAAATAACAATAGAGGACTTCTTTAAGGATCTTCAAGAAGAATTCAAGAACTGGGAAGCAAACGCTGCTTCACAAGGAAAGCCAAAGAGTCTATGGGAGGAATTGGCGGAAATAGGAGAAGAATTTGTGGAGTTCCTTGAGAAAGAACTTAATATTACTGATCAAAATGATGATTATAAAACGTCTCAGGGAGAAAATACATCCAACTTTTCTGGGACGGAGACACCAAGCAATAGCAGTCAAGGTGAAGCTAGCAAGGGAAACAGAAGCGTTGACGATAACATTGAGGAAATAGAAGCTACTCTGGCTCAGTTGAAAAAGGAATTAGGTTTATAGCATAAAAGGATTAGGTTCCTCCATTTGGTAGAGAGAAAAAGTCACAGAATTCATTGCCTCTCATTCTTGGCACAAGACATGGCCTTTAATTATGTGAAGGCATATCTCTTGGTGGCCATTGGGAACCAAAGTCACCAAATTGACTATGTAACACTAGGGCTTCATCTGTTTTATTTTTTTTGTTTTCGGTGTTAGTTGGGTGGGTAGGGGCAGTATAACAACACTAAAACTTAAATCATGGATGTATTTGGTGAGATGAATGCAAGAGAAATGTAAAGGGATTATAATTTATTTGGTTTGTGAAACATTTTATGCGGAACTCGAAACATTGACAAATTTATTTGGATTCTAAGGACATTTACAAACAAATGTAAAGGGTCCACTTCGTGAATTCTGAATTTCCATTTACCTTTCCCCATTATTT

Coding sequences of Glyma15g04040

Limit To All Plant Sequences

>Glyma15g04040.1   sequence type=CDS   gene model=Glyma15g04040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGAGAACAAAGCTTTGGAGATAAAATGCATGGAATAACTCTCCCTCTCACTGCAACTGCAAATAGCTTCCTTTTGAGATCTCCTCTACCAAGTTGTTTCATACCCACTTGTAAAGTTAGCTACGGATTTCGTTTTAACCATTCTCAGTGGAAGCACCATAAAACAGAAGGATGGAGCAATAGGAATAGAACGATGGTGGTGAGAGCAAGGCGTAGCGAGTCACCGTATGATGTTTTGGGAGTGTCTCCATCAGCATCCGTCGACGAAATCAAAAAGGCCTATCGGAAACTTGCTCTTAAGTATCATCCCGATGTTAATAAAGAGGATAAGGCACAGGAGAAGTTTATGAGGATAAAACATGCATACAATACATTGCTAAATTCTAGTTCCCGCAAAAAATATGATTCTGGAAGTCGAGGTTATGATTTTTCTCAAGGAAGCCGAAGTAGGAATGTACAAACTGAAGAAGAATTTTATGGACTAGGTAATTTTTTGAGGGATGTTCAAATAACAATAGGTAGATACATACTCTCTGAGGACTTCTTTAAGGATCTTCAAGAAGAATTCAAGAACTGGGAAGCAAACGCTGCTTCACAAGGAAAGCCAAAGAGTCTATGGGAGGAATTGGCGGAAATAGGAGAAGAATTTGTGGAGTTCCTTGAGAAAGAACTTAATATTACTGATCAAAATGATGATTATAAAACGTCTCAGGGAGAAAATACATCCAACTTTTCTGGGACGGAGACACCAAGCAATAGCAGTCAAGGTGAAGCTAGCAAGGGAAACAGAAGCGTTGACGATAACATTGAGGAAATAGAAGCTACTCTGGCTCAGTTGAAAAAGGAATTAGGTTTATAG

>Glyma15g04040.2   sequence type=CDS   gene model=Glyma15g04040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGAGAACAAAGCTTTGGAGATAAAATGCATGGAATAACTCTCCCTCTCACTGCAACTGCAAATAGCTTCCTTTTGAGATCTCCTCTACCAAGTTGTTTCATACCCACTTGTAAAGTTAGCTACGGATTTCGTTTTAACCATTCTCAGTGGAAGCACCATAAAACAGAAGGATGGAGCAATAGGAATAGAACGATGGTGGTGAGAGCAAGGCGTAGCGAGTCACCGTATGATGTTTTGGGAGTGTCTCCATCAGCATCCGTCGACGAAATCAAAAAGGCCTATCGGAAACTTGCTCTTAAGTATCATCCCGATGTTAATAAAGAGGATAAGGCACAGGAGAAGTTTATGAGGATAAAACATGCATACAATACATTGCTAAATTCTAGTTCCCGCAAAAAATATGATTCTGGAAGTCGAGGTTATGATTTTTCTCAAGGAAGCCGAAGTAGGAATGTACAAACTGAAGAAGAATTTTATGGACTAGAGGACTTCTTTAAGGATCTTCAAGAAGAATTCAAGAACTGGGAAGCAAACGCTGCTTCACAAGGAAAGCCAAAGAGTCTATGGGAGGAATTGGCGGAAATAGGAGAAGAATTTGTGGAGTTCCTTGAGAAAGAACTTAATATTACTGATCAAAATGATGATTATAAAACGTCTCAGGGAGAAAATACATCCAACTTTTCTGGGACGGAGACACCAAGCAATAGCAGTCAAGGTGAAGCTAGCAAGGGAAACAGAAGCGTTGACGATAACATTGAGGAAATAGAAGCTACTCTGGCTCAGTTGAAAAAGGAATTAGGTTTATAG

>Glyma15g04040.3   sequence type=CDS   gene model=Glyma15g04040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGAGAACAAAGCTTTGGAGATAAAATGCATGGAATAACTCTCCCTCTCACTGCAACTGCAAATAGCTTCCTTTTGAGATCTCCTCTACCAAGTTGTTTCATACCCACTTGTAAAGTTAGCTACGGATTTCGTTTTAACCATTCTCAGTGGAAGCACCATAAAACAGAAGGATGGAGCAATAGGAATAGAACGATGGTGGTGAGAGCAAGGCGTAGCGAGTCACCGTATGATGTTTTGGGAGTGTCTCCATCAGCATCCGTCGACGAAATCAAAAAGGCCTATCGGAAACTTGCTCTTAAGTATCATCCCGATGTTAATAAAGAGGATAAGGCACAGGAGAAGTTTATGAGGATAAAACATGCATACAATACATTGCTAAATTCTAGTTCCCGCAAAAAATATGATTCTGGAAGTCGAGGTTATGATTTTTCTCAAGGAAGCCGAAGTAGGAATGTACAAACTGAAGAAGAATTTTATGGACTAGGTAATTTTTTGAGGGATGTTCAAATAACAATAGAGGACTTCTTTAAGGATCTTCAAGAAGAATTCAAGAACTGGGAAGCAAACGCTGCTTCACAAGGAAAGCCAAAGAGTCTATGGGAGGAATTGGCGGAAATAGGAGAAGAATTTGTGGAGTTCCTTGAGAAAGAACTTAATATTACTGATCAAAATGATGATTATAAAACGTCTCAGGGAGAAAATACATCCAACTTTTCTGGGACGGAGACACCAAGCAATAGCAGTCAAGGTGAAGCTAGCAAGGGAAACAGAAGCGTTGACGATAACATTGAGGAAATAGAAGCTACTCTGGCTCAGTTGAAAAAGGAATTAGGTTTATAG

Predicted protein sequences of Glyma15g04040

Limit To All Plant Sequences

>Glyma15g04040.1   sequence type=predicted peptide   gene model=Glyma15g04040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MREQSFGDKMHGITLPLTATANSFLLRSPLPSCFIPTCKVSYGFRFNHSQWKHHKTEGWSNRNRTMVVRARRSESPYDVLGVSPSASVDEIKKAYRKLALKYHPDVNKEDKAQEKFMRIKHAYNTLLNSSSRKKYDSGSRGYDFSQGSRSRNVQTEEEFYGLGNFLRDVQITIGRYILSEDFFKDLQEEFKNWEANAASQGKPKSLWEELAEIGEEFVEFLEKELNITDQNDDYKTSQGENTSNFSGTETPSNSSQGEASKGNRSVDDNIEEIEATLAQLKKELGL*

>Glyma15g04040.2   sequence type=predicted peptide   gene model=Glyma15g04040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MREQSFGDKMHGITLPLTATANSFLLRSPLPSCFIPTCKVSYGFRFNHSQWKHHKTEGWSNRNRTMVVRARRSESPYDVLGVSPSASVDEIKKAYRKLALKYHPDVNKEDKAQEKFMRIKHAYNTLLNSSSRKKYDSGSRGYDFSQGSRSRNVQTEEEFYGLEDFFKDLQEEFKNWEANAASQGKPKSLWEELAEIGEEFVEFLEKELNITDQNDDYKTSQGENTSNFSGTETPSNSSQGEASKGNRSVDDNIEEIEATLAQLKKELGL*

>Glyma15g04040.3   sequence type=predicted peptide   gene model=Glyma15g04040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MREQSFGDKMHGITLPLTATANSFLLRSPLPSCFIPTCKVSYGFRFNHSQWKHHKTEGWSNRNRTMVVRARRSESPYDVLGVSPSASVDEIKKAYRKLALKYHPDVNKEDKAQEKFMRIKHAYNTLLNSSSRKKYDSGSRGYDFSQGSRSRNVQTEEEFYGLGNFLRDVQITIEDFFKDLQEEFKNWEANAASQGKPKSLWEELAEIGEEFVEFLEKELNITDQNDDYKTSQGENTSNFSGTETPSNSSQGEASKGNRSVDDNIEEIEATLAQLKKELGL*

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