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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G46740 | AT | Annotation by Michelle Graham. TAIR10: translocon at the outer envelope membrane of chloroplasts 75-III | chr3:17216104-17219296 REVERSE LENGTH=818 | SoyBase | E_val: 0 | ISS |
| GO:0009658 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chloroplast organization | SoyBase | N/A | ISS |
| GO:0045036 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to chloroplast | SoyBase | N/A | ISS |
| GO:0045037 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein import into chloroplast stroma | SoyBase | N/A | ISS |
| GO:0048481 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ovule development | SoyBase | N/A | ISS |
| GO:0048598 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryonic morphogenesis | SoyBase | N/A | ISS |
| GO:0005774 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009536 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plastid | SoyBase | N/A | ISS |
| GO:0009941 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope | SoyBase | N/A | ISS |
| GO:0010006 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: toc complex | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0031359 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to chloroplast outer membrane | SoyBase | N/A | ISS |
| GO:0015450 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | SoyBase | N/A | ISS |
| PTHR12815 | Panther | SORTING AND ASSEMBLY MACHINERY (SAM50) PROTEIN | JGI | ISS | |
| PTHR12815:SF6 | Panther | gb def: essential protein with similarity to s. pombe hypothetical protein e241976, ynl0 | JGI | ISS | |
| PF01103 | PFAM | Surface antigen | JGI | ISS | |
| PF07244 | PFAM | Surface antigen variable number repeat | JGI | ISS | |
| UniRef100_B9S3G1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Sorting and assembly machinery (Sam50) protein, putative n=1 Tax=Ricinus communis RepID=B9S3G1_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233B18C | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233B18C related cluster n=1 Tax=unknown RepID=UPI000233B18C | SoyBase | E_val: 0 | ISS |
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Glyma15g04030 not represented in the dataset |
Glyma15g04030 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma13g41370 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.15g035600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma15g04030.1 sequence type=CDS gene model=Glyma15g04030 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCATCCTTCGCTGCCCCCAACAACCTCGGTAGCGCCGTGCTACCCTCTCGTCCCCCTCCCGTCAAATGCACCCTTTTCCCTTCTTGCAACAACAACAACAACCATTCACTTTCAAACCCTTCTCCCTCTCACCCTCCGCCGCTCTTCAAAGCCATCGCCATCTCCTCCGCCGCCTCCATCCTTATGCACTGTACCCCTCTCTCCCCCTTCCTCCCTAACCCCCTCGCCAAACTCGGCGGAGGCGGCGGAAACACCGGCGGCGGCGGCGGAGGCGGAGACGGATGGTTCGGCGGTGGCGGTGGCGGAAATGGAGGGTTCTGGTCCAGAATGTTCGCCGCGGTGGCCGACGAATCCCAGTCTCAGGAGTGGGATTCGCACGGTCTACCCGCGAACATCGTGGTTCAGTTGAACAAAATGAGTGGGTTCAAGAAGTACAAGGTTTCCGACATCTCCTTTTTCGATCGGAACAGGAAGATGAAAGTGGGAACGGAGGATTCGTTCTTCGAGATGGTTTCTCTTCGGCCGGGCGGGGTTTACACCAAAGGGCAGCTCCAGAAGGAGTTGGAGACGCTGGCAACTTCGGGAATGTTCGAGAAGGTTGATTTGGAAGGGAAAACAAACCCTGACGGCTCAATTGGGGTTACCATTTCCTTCAGCGAGAGCACGTGGCAGTCGGCAGATGGATTTCGCTGCATCAATGTAGGGTTGATGCAGCAAACAAAGCCTGTTGAAATGGACGCTGATATGACCGATAAGGAGAGACTGGAGTACTATTTGAGTCAGGAGAGGGAGTACAAGAGGAGAATCGAGAGGGCCAGGCCCTGCCTCTTGCCTCGCTACGTCCACAATGAGATCCTGGACATGCTCAAGAGACATGGCATGGTCAGTGCCCGCCTGTTGCAGAGGATTCGGGACCGGGTGCAAAAATGGTACCATGATGAAGGCTATGCCTGTGCCCAGGTCGTTAATTTCGGCAACCTTAACACCAAGGAGGTTGTTTGTGAGGTTGTTGAAGGCGATATCACACAATTGGATATTCAGTTTCAAGATAAGCTTGGTAATGTTGTTGAAGGGAACACTCAAGTCCCTGTCATTCAAAGAGAGCTTCCCCGGCAGCTGCGCCCAGGTTACACCTTCAATATTGAAGCAGGGAAGCAAGCTTTAAGAAATGTGAACTCCCTTGCTTTGTTTTCAAATATTGAGGTGAATCCGCGCCCTGATGAGACTAATGAAGGAGGTATAGTTGTTGAAATTAAGCTAAAGGAGTTAGAACAAAAGTCAGCTGAAGTCAGTACCGAGTGGAGTATTGTCCCTGGACGTGGAGGGCATCCCACTCTGGCTTCCCTTCAGCCAGGTGGCACTGTTAGTTTTGAACATCGGAATCTGCAAGGGCTGAATAGATCTATTAACGGTTCTATAACAACAAGCAACTTCTTGAATCCTCAGGATGATCTTGCATTTAAGCTAGAGTATGTGCATCCATATCTGGATGGTGTATACTATTCACGCAACCGTACTCTCCGTGTAAGCTGCTTCAATAGCCGTAAGCTGAGTCCAGTATTCACTGGGGGGCCAGGCGTGGATGAAGTGCCACCAATATGGGTTGATCGTACTGGTGTTAAAGCTAATATTACAGAGAATTTCACACGTCAGAGTAAATTCACATATGGACTTGTAATGGAAGAGATAACAACACGTGATGAAAGTAGTCATATCTGTGCAAATGGTCAAAGAGTATTACCTAGTGGAGGAATTAGTGCCGATGGACCTCCAACCACTCTCAGTGGTACTGGCATTGATCACATGGCATTTTTACAGGCAAATATCACACGTGATAACACACGTTTTGTGAATGGAACTGTTGTTGGAGACAGAAATATGTTCCAGGTAGACCAAGGCCTTGGCATTGGCAGCCAGTTCCCCTTCTTTAACCGTCACCAACTAACTCTGACACGATTTATCCAGTTGATGGCAGTGGAGGAAGGGGCTGGTAAACCACCTCCACCAGTGCTTGTCCTCCATGGCCACTATGGTGGTTGTGTAGGTGATCTCCCCAGCTATGATGCTTTTACTCTTGGGGGGCCCTATTCTGTAAGGGGCTACAACATGGGTGAGATAGGAGCTGCCAGAAACATCCTTGAGCTTGCAGCTGAGTTAAGGATACCTGTTAAAGGTACGCATGTGTATGCATTTACTGAACATGGCAATGATCTAGGGAGTTCAAAGGGTGTCAAAGGTAATCCTACAGAAGTCTACAGACGAATGGGTCATGGTTCATCCTACGGTCTTGGTGTCAAGCTTGGTTTAGTGAGAGCAGAATATGCTGTTGATCACAACTCAGGAACTGGTGCATTGTTTTTCCGTTTCGGAGAGAGGTTTTGA
>Glyma15g04030.1 sequence type=predicted peptide gene model=Glyma15g04030 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASFAAPNNLGSAVLPSRPPPVKCTLFPSCNNNNNHSLSNPSPSHPPPLFKAIAISSAASILMHCTPLSPFLPNPLAKLGGGGGNTGGGGGGGDGWFGGGGGGNGGFWSRMFAAVADESQSQEWDSHGLPANIVVQLNKMSGFKKYKVSDISFFDRNRKMKVGTEDSFFEMVSLRPGGVYTKGQLQKELETLATSGMFEKVDLEGKTNPDGSIGVTISFSESTWQSADGFRCINVGLMQQTKPVEMDADMTDKERLEYYLSQEREYKRRIERARPCLLPRYVHNEILDMLKRHGMVSARLLQRIRDRVQKWYHDEGYACAQVVNFGNLNTKEVVCEVVEGDITQLDIQFQDKLGNVVEGNTQVPVIQRELPRQLRPGYTFNIEAGKQALRNVNSLALFSNIEVNPRPDETNEGGIVVEIKLKELEQKSAEVSTEWSIVPGRGGHPTLASLQPGGTVSFEHRNLQGLNRSINGSITTSNFLNPQDDLAFKLEYVHPYLDGVYYSRNRTLRVSCFNSRKLSPVFTGGPGVDEVPPIWVDRTGVKANITENFTRQSKFTYGLVMEEITTRDESSHICANGQRVLPSGGISADGPPTTLSGTGIDHMAFLQANITRDNTRFVNGTVVGDRNMFQVDQGLGIGSQFPFFNRHQLTLTRFIQLMAVEEGAGKPPPPVLVLHGHYGGCVGDLPSYDAFTLGGPYSVRGYNMGEIGAARNILELAAELRIPVKGTHVYAFTEHGNDLGSSKGVKGNPTEVYRRMGHGSSYGLGVKLGLVRAEYAVDHNSGTGALFFRFGERF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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